Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000394.1

Orthogroup ID

OG0001305

Physical Location & Seq

Genomic Coordinates Forward (+)

159101 .. 160109

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000394.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atggagtgcaatagagatgaggccgtgaggacaaaagagatggcggagaagaagttcgctacaaaggattatatgggggcaaagacgtttgctttgaaggctcaaaacttgtttccaggtctttcgggtattccccaaatgctggcggtgctagacgtgtatatttctgcagagaaaaagataattggggaagctgattggtatggcattcttggtgtggatccgacagcagatgacgagacaatgagaaaaaagtataagaaactagctcttgtacttcaccctgataagaacggttctccaggagctgatggagcattcatgctgattgcagaggcgtggagtttgttgtctgataaagccaagagagccgcatatgaccagaagatcaggaatgaaggatttcacagaaatgtttcaagtacagtggcccaggattttcccaatttcacacaaagcacaaacttcagtgctgcaaacgcagagcagtggcagaattcaaatcatgaaacaacagcgaatagaagcacattcaatacaggaaggagtagtgcagcctctgcaattaaccaaagcttctaccatacgttctcgaggactgctagtggttttacagctgcccatgccccaagcgtggatcagacggcacaaacagcaactagaatgcctcatgccttcaatcaggccagtggtgcttcaactacaggatatgctaataatgctgcaaagagaagatgcatggatgatgttggaatgagcagatatggaaaggaagctaaaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

261

Amino Acids

28.56

Weight (kDa)

9.08

Isoelectric Point (pI)

31.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380
fragaria_vesca	FvH4_4g23600 FvH4_4g23600 FvH4_4g23600 FvH4_6g05390 FvH4_6g05390
malus_domestica	MD13G1120800.v1.1 MD16G1120800.v1.1
prunus_persica	Prupe.1G224400_v2.0.a1
pyrus_communis	pycom16g10320
rosa_chinensis	RchiOBHm_Chr4g0430021 RchiOBHm_Chr4g0430031 RchiOBHm_Chr7g0212821 RchiOBHm_Chr7g0212831
rosa_laevigata	RLG00000002867 RLG00000007011 RLG00000007012
rosa_multiflora	Rmu_co8191322.1_g000001 Rmu_sc0000394.1_g000043 Rmu_sc0000394.1_g000047 Rmu_sc0013698.1_g000012 Rmu_ssc0000150.1_g000033 Rmu_ssc0000150.1_g000035
rosa_roxburghii	Rroxscaffold_3G00246530 Rroxscaffold_5G00371840 Rroxscaffold_5G00371850
rosa_rugosa	Rorug04G0239800 Rorug04G0239800 Rorug07G0136800
rosa_samantha	Rh4AG296700 Rh4AG296800 Rh4BG303000 Rh4BG303100 Rh4CG318500 Rh4CG318600 Rh4DG300300 Rh4DG300400 Rh7AG268400 Rh7BG263900 Rh7BG264000 Rh7CG287400 Rh7DG276500
rosa_wichuraiana	Rw4G025700 Rw4G025720 Rw7G023190 Rw7G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	142
AciI	CCGC	3 cut(s)	44, 146, 372
AclWI	GGATC	3 cut(s)	215, 228, 645
AcsI	RAATTY	1 cut(s)	496
AcuI	CTGAAG	1 cut(s)	451
AfaI	GTAC	2 cut(s)	276, 424
AfiI	CCNNNNNNNGG	2 cut(s)	142, 634
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	6 cut(s)	97, 420, 501, 535, 679, 699
AjiI	CACGTC	1 cut(s)	157
AjnI	CCWGG	3 cut(s)	115, 301, 432
AloI	GAACNNNNNNTCC	2 cut(s)	38, 70
AluBI	AGCT	6 cut(s)	194, 269, 308, 576, 617, 776
AluI	AGCT	6 cut(s)	194, 269, 308, 576, 617, 776
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	3 cut(s)	215, 228, 645
AlwNI	CAGNNNCTG	2 cut(s)	308, 560
Ama87I	CYCGRG	1 cut(s)	592
AoxI	GGCC	3 cut(s)	21, 429, 684
ApeKI	GCWGC	4 cut(s)	473, 554, 617, 722
ApoI	RAATTY	1 cut(s)	496
ArsI	GACNNNNNNTTYG	2 cut(s)	76, 108
Asp700I	GAANNNNTTC	3 cut(s)	53, 402, 415
AspS9I	GGNCC	1 cut(s)	430
AsuHPI	GGTGA	1 cut(s)	272
AvaI	CYCGRG	1 cut(s)	592
BamHI	GGATCC	1 cut(s)	220
BbvI	GCAGC	4 cut(s)	460, 566, 604, 709
BccI	CCATC	2 cut(s)	34, 305
BceAI	ACGGC	2 cut(s)	8, 660
BciT130I	CCWGG	3 cut(s)	117, 303, 434
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	4 cut(s)	152, 266, 603, 660
BfmI	CTRYAG	2 cut(s)	168, 702
BisI	GCNGC	5 cut(s)	372, 474, 555, 618, 723
BlsI	GCNGC	5 cut(s)	373, 475, 556, 619, 724
Bme1390I	CCNGG	3 cut(s)	117, 303, 434
BmeT110I	CYCGRG	1 cut(s)	592
BmgBI	CACGTC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	3 cut(s)	117, 303, 434
BmsI	GCATC	1 cut(s)	725
BpmI	CTGGAG	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	432
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 634
Bse1I	ACTGG	1 cut(s)	687
BseBI	CCWGG	3 cut(s)	117, 303, 434
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	1 cut(s)	748
BseLI	CCNNNNNNNGG	2 cut(s)	142, 634
BseNI	ACTGG	1 cut(s)	687
BseXI	GCAGC	4 cut(s)	460, 566, 604, 709
BsgI	GTGCAG	1 cut(s)	573
BshFI	GGCC	3 cut(s)	23, 431, 686
BsiHKCI	CYCGRG	1 cut(s)	592
BslI	CCNNNNNNNGG	2 cut(s)	142, 634
BsmAI	GTCTC	1 cut(s)	233
BsmI	GAATGC	3 cut(s)	207, 317, 669
BsnI	GGCC	3 cut(s)	23, 431, 686
BsoBI	CYCGRG	1 cut(s)	592
Bsp143I	GATC	3 cut(s)	220, 387, 637
BspACI	CCGC	3 cut(s)	44, 146, 372
BspANI	GGCC	3 cut(s)	23, 431, 686
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	222
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	3 cut(s)	215, 228, 645
BsrI	ACTGG	1 cut(s)	687
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	3 cut(s)	220, 387, 637
Bst2UI	CCWGG	3 cut(s)	117, 303, 434
Bst4CI	ACNGT	2 cut(s)	296, 427
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstC8I	GCNNGC	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	748
BstKTI	GATC	3 cut(s)	223, 390, 640
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	3 cut(s)	220, 387, 637
BstNI	CCWGG	3 cut(s)	117, 303, 434
BstSCI	CCNGG	3 cut(s)	115, 301, 432
BstSFI	CTRYAG	2 cut(s)	168, 702
BstV1I	GCAGC	4 cut(s)	460, 566, 604, 709
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	3 cut(s)	23, 431, 686
BtrI	CACGTC	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	748
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	4 cut(s)	432, 475, 494, 694
Cac8I	GCNNGC	1 cut(s)	144
CaiI	CAGNNNCTG	2 cut(s)	308, 560
CciI	TCATGA	1 cut(s)	505
Cfr13I	GGNCC	1 cut(s)	430
Csp6I	GTAC	2 cut(s)	275, 423
CspCI	CAANNNNNGTGG	2 cut(s)	408, 443
CviAII	CATG	5 cut(s)	322, 506, 623, 671, 739
CviQI	GTAC	2 cut(s)	275, 423
DpnI	GATC	3 cut(s)	222, 389, 639
DpnII	GATC	3 cut(s)	220, 387, 637
EciI	GGCGGA	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	451
Eco88I	CYCGRG	1 cut(s)	592
EcoRI	GAATTC	1 cut(s)	496
EcoRII	CCWGG	3 cut(s)	115, 301, 432
EcoT22I	ATGCAT	1 cut(s)	740
FaeI	CATG	5 cut(s)	325, 509, 626, 674, 742
FatI	CATG	5 cut(s)	321, 505, 622, 670, 738
FauNDI	CATATG	1 cut(s)	376
Fnu4HI	GCNGC	5 cut(s)	372, 474, 555, 618, 723
FokI	GGATG	1 cut(s)	755
Fsp4HI	GCNGC	5 cut(s)	372, 474, 555, 618, 723
FspBI	CTAG	4 cut(s)	152, 266, 603, 660
GluI	GCNGC	5 cut(s)	372, 474, 555, 618, 723
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	3 cut(s)	23, 431, 686
Hin1II	CATG	5 cut(s)	325, 509, 626, 674, 742
HindIII	AAGCTT	1 cut(s)	574
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	3 cut(s)	225, 355, 642
Hpy188III	TCNNGA	3 cut(s)	391, 506, 592
HpyAV	CCTTC	4 cut(s)	91, 392, 537, 685
HpyCH4III	ACNGT	2 cut(s)	296, 427
HpyCH4IV	ACGT	3 cut(s)	86, 156, 587
HpyCH4V	TGCA	8 cut(s)	9, 170, 332, 476, 554, 563, 725, 738
HpySE526I	ACGT	3 cut(s)	86, 156, 587
Hsp92II	CATG	5 cut(s)	325, 509, 626, 674, 742
Kzo9I	GATC	3 cut(s)	220, 387, 637
LmnI	GCTCC	2 cut(s)	305, 314
Lsp1109I	GCAGC	4 cut(s)	460, 566, 604, 709
LweI	GCATC	1 cut(s)	725
MaeI	CTAG	4 cut(s)	152, 266, 603, 660
MaeII	ACGT	3 cut(s)	86, 156, 587
MalI	GATC	3 cut(s)	222, 389, 639
MboI	GATC	3 cut(s)	220, 387, 637
MboII	GAAGA	3 cut(s)	61, 397, 744
MflI	RGATCY	1 cut(s)	220
MluCI	AATT	5 cut(s)	183, 445, 496, 564, 781
MmeI	TCCRAC	2 cut(s)	248, 730
MnlI	CCTC	6 cut(s)	13, 21, 328, 568, 588, 678
Mph1103I	ATGCAT	1 cut(s)	740
MroXI	GAANNNNTTC	3 cut(s)	53, 402, 415
MseI	TTAA	2 cut(s)	567, 784
MslI	CAYNNNNRTG	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	617
MspR9I	CCNGG	3 cut(s)	117, 303, 434
Mva1269I	GAATGC	3 cut(s)	207, 317, 669
MvaI	CCWGG	3 cut(s)	117, 303, 434
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	3 cut(s)	220, 387, 637
NlaIII	CATG	5 cut(s)	325, 509, 626, 674, 742
NlaIV	GGNNCC	1 cut(s)	222
NsiI	ATGCAT	1 cut(s)	740
PaeR7I	CTCGAG	1 cut(s)	592
PagI	TCATGA	1 cut(s)	505
PctI	GAATGC	3 cut(s)	207, 317, 669
PdmI	GAANNNNTTC	3 cut(s)	53, 402, 415
PflMI	CCANNNNNTGG	1 cut(s)	142
PfoI	TCCNGGA	1 cut(s)	301
PkrI	GCNGC	5 cut(s)	373, 475, 556, 619, 724
Psp6I	CCWGG	3 cut(s)	115, 301, 432
PspGI	CCWGG	3 cut(s)	115, 301, 432
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	430
PstI	CTGCAG	1 cut(s)	172
PstNI	CAGNNNCTG	2 cut(s)	308, 560
PsuI	RGATCY	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	2 cut(s)	276, 424
RsaNI	GTAC	2 cut(s)	275, 423
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	2 cut(s)	567, 784
SatI	GCNGC	5 cut(s)	372, 474, 555, 618, 723
Sau3AI	GATC	3 cut(s)	220, 387, 637
Sau96I	GGNCC	1 cut(s)	430
ScrFI	CCNGG	3 cut(s)	117, 303, 434
SfaNI	GCATC	1 cut(s)	725
SfcI	CTRYAG	2 cut(s)	168, 702
Sfr274I	CTCGAG	1 cut(s)	592
SlaI	CTCGAG	1 cut(s)	592
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	592
SmoI	CTYRAG	1 cut(s)	592
Sse9I	AATT	5 cut(s)	183, 445, 496, 564, 781
SsiI	CCGC	3 cut(s)	44, 146, 372
SspMI	CTAG	4 cut(s)	152, 266, 603, 660
StyD4I	CCNGG	3 cut(s)	115, 301, 432
TaaI	ACNGT	2 cut(s)	296, 427
TaiI	ACGT	3 cut(s)	89, 159, 590
TaqI	TCGA	1 cut(s)	593
TasI	AATT	5 cut(s)	183, 445, 496, 564, 781
TatI	WGTACW	2 cut(s)	274, 422
TauI	GCSGC	1 cut(s)	374
Tru1I	TTAA	2 cut(s)	567, 784
Tru9I	TTAA	2 cut(s)	567, 784
TscAI	CASTG	4 cut(s)	432, 475, 494, 694
TseI	GCWGC	4 cut(s)	473, 554, 617, 722
TspDTI	ATGAA	3 cut(s)	310, 411, 522
TspRI	CASTG	4 cut(s)	432, 475, 494, 694
Van91I	CCANNNNNTGG	1 cut(s)	142
XapI	RAATTY	1 cut(s)	496
XhoI	CTCGAG	1 cut(s)	592
XmnI	GAANNNNTTC	3 cut(s)	53, 402, 415
XspI	CTAG	4 cut(s)	152, 266, 603, 660
Zsp2I	ATGCAT	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.