Rw7G023300

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001305
Physical Location & Seq
Forward (+)
27956188 .. 27956929
742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G023300.1

Sequence Viewer

Length: 711 bp
ATGGAGTGCAATAGAGATGAGGCCGTGAGGACAAAAGAGATGGCGGAGAAGAAGTTCGCTACAAAGGATTATATGGGGGCAAAGACGTTTGCTTTGAAGGCTCAAAACTTGTTTCCAGGTCTTTCGGGTATTCCCCAAATGCTGGCGAAAAAGATAATTGGGGAAGCTGATTGGTATGACATTCTTGGTGTGGATCCGACAGCAGATGACGAGACAATGAGAAAAAAGTATAAGAAACTAGCTCTTGTACTTCACCCTGATAAGAACGGTTCTCCAGGAGCTGATGGAGCATTCATGCTGATTGCAGAGGCGTGGAGTTTGTTGTCTGATAAAGCCAAGAGAGCCGCATATGACCAGAAGATCAGGAATGAAGGATTTCACAGAAATGTTTCGAGTACAGTGGCCCAGGATTTTCCCAATTTCACACAAAGCACAAACTTCAGTGCTGCAAACGGTCAGACGACAACCACACAGGCGGATAGTTTTTTGACTCCGGCTGCTTCATCCCAAAGTCCCAATACCTTTAGGACCATGTGTCCTACTTTCTTGGTGACATATGAGTATCTCCTCATTTACCTTCATCATTATCTTCGTTGCCATCGTTGCCAAAGTACACTTTCACCAATAGACATTGCTCCACCTATAATTGCATCAGAGCAGTTCGATCACCCCATCAAATTTAGCAGAGCAGTGGCAGAATTCAAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

236

Amino Acids

26.37

Weight (kDa)

8.26

Isoelectric Point (pI)

35.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 57 - 118 1.6e-22 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 142
AciI CCGC 3 cut(s) 44, 345, 476
AclWI GGATC 2 cut(s) 188, 201
AcsI RAATTY 2 cut(s) 677, 698
AcuI CTGAAG 1 cut(s) 424
AfaI GTAC 3 cut(s) 249, 397, 613
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 2 cut(s) 97, 703
AhdI GACNNNNNGTC 1 cut(s) 534
AjnI CCWGG 3 cut(s) 115, 274, 405
AloI GAACNNNNNNTCC 2 cut(s) 38, 70
AluBI AGCT 3 cut(s) 167, 242, 281
AluI AGCT 3 cut(s) 167, 242, 281
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 2 cut(s) 188, 201
AlwNI CAGNNNCTG 1 cut(s) 281
AoxI GGCC 2 cut(s) 21, 402
ApeKI GCWGC 2 cut(s) 446, 497
ApoI RAATTY 2 cut(s) 677, 698
ArsI GACNNNNNNTTYG 2 cut(s) 76, 108
Asp700I GAANNNNTTC 3 cut(s) 53, 375, 388
AspS9I GGNCC 2 cut(s) 403, 528
AsuHPI GGTGA 4 cut(s) 245, 562, 612, 659
AvaII GGWCC 1 cut(s) 528
BamHI GGATCC 1 cut(s) 193
BbvI GCAGC 2 cut(s) 433, 484
BccI CCATC 4 cut(s) 34, 278, 606, 680
BceAI ACGGC 1 cut(s) 8
BciT130I CCWGG 3 cut(s) 117, 276, 407
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 1 cut(s) 239
BisI GCNGC 3 cut(s) 345, 447, 498
BlsI GCNGC 3 cut(s) 346, 448, 499
Bme1390I CCNGG 3 cut(s) 117, 276, 407
Bme18I GGWCC 1 cut(s) 528
BmeRI GACNNNNNGTC 1 cut(s) 534
BmgT120I GGNCC 2 cut(s) 403, 528
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 3 cut(s) 117, 276, 407
BmsI GCATC 1 cut(s) 659
BpmI CTGGAG 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 405
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse3DI GCAATG 1 cut(s) 630
BseBI CCWGG 3 cut(s) 117, 276, 407
BseDI CCNNGG 1 cut(s) 405
BseGI GGATG 1 cut(s) 503
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMI GCAATG 1 cut(s) 630
BseRI GAGGAG 1 cut(s) 557
BseXI GCAGC 2 cut(s) 433, 484
BshFI GGCC 2 cut(s) 23, 404
BsiSI CCGG 1 cut(s) 494
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 498
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 2 cut(s) 23, 404
Bsp143I GATC 3 cut(s) 193, 360, 664
BspACI CCGC 3 cut(s) 44, 345, 476
BspANI GGCC 2 cut(s) 23, 404
BspHI TCATGA 1 cut(s) 707
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 2 cut(s) 188, 201
BsrDI GCAATG 1 cut(s) 630
BssECI CCNNGG 1 cut(s) 405
BssMI GATC 3 cut(s) 193, 360, 664
Bst2UI CCWGG 3 cut(s) 117, 276, 407
Bst4CI ACNGT 3 cut(s) 269, 400, 455
BstC8I GCNNGC 1 cut(s) 144
BstF5I GGATG 1 cut(s) 503
BstKTI GATC 3 cut(s) 196, 363, 667
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 3 cut(s) 193, 360, 664
BstMWI GCNNNNNNNGC 4 cut(s) 98, 287, 341, 603
BstNI CCWGG 3 cut(s) 117, 276, 407
BstSCI CCNGG 3 cut(s) 115, 274, 405
BstV1I GCAGC 2 cut(s) 433, 484
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 2 cut(s) 23, 404
BtsCI GGATG 1 cut(s) 503
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 3 cut(s) 405, 448, 696
Cac8I GCNNGC 1 cut(s) 144
CaiI CAGNNNCTG 1 cut(s) 281
CciI TCATGA 1 cut(s) 707
Cfr13I GGNCC 2 cut(s) 403, 528
Csp6I GTAC 3 cut(s) 248, 396, 612
CviAII CATG 3 cut(s) 295, 532, 708
CviJI RGCY 9 cut(s) 23, 101, 167, 242, 281, 335, 344, 404, 497
CviKI_1 RGCY 9 cut(s) 23, 101, 167, 242, 281, 335, 344, 404, 497
CviQI GTAC 3 cut(s) 248, 396, 612
DpnI GATC 3 cut(s) 195, 362, 666
DpnII GATC 3 cut(s) 193, 360, 664
DriI GACNNNNNGTC 1 cut(s) 534
Eam1105I GACNNNNNGTC 1 cut(s) 534
EciI GGCGGA 2 cut(s) 59, 491
Eco47I GGWCC 1 cut(s) 528
Eco57I CTGAAG 1 cut(s) 424
EcoRI GAATTC 1 cut(s) 698
EcoRII CCWGG 3 cut(s) 115, 274, 405
FaeI CATG 3 cut(s) 298, 535, 711
FaqI GGGAC 1 cut(s) 498
FatI CATG 3 cut(s) 294, 531, 707
FauNDI CATATG 2 cut(s) 349, 556
Fnu4HI GCNGC 3 cut(s) 345, 447, 498
FokI GGATG 1 cut(s) 490
Fsp4HI GCNGC 3 cut(s) 345, 447, 498
FspBI CTAG 1 cut(s) 239
GluI GCNGC 3 cut(s) 345, 447, 498
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 2 cut(s) 23, 404
HapII CCGG 1 cut(s) 494
Hin1II CATG 3 cut(s) 298, 535, 711
HinfI GANTC 1 cut(s) 490
HpaII CCGG 1 cut(s) 494
HphI GGTGA 4 cut(s) 245, 562, 612, 659
Hpy166II GTNNAC 1 cut(s) 614
Hpy188I TCNGA 4 cut(s) 198, 328, 459, 655
Hpy188III TCNNGA 2 cut(s) 364, 708
Hpy8I GTNNAC 1 cut(s) 614
HpyAV CCTTC 3 cut(s) 91, 365, 587
HpyCH4III ACNGT 3 cut(s) 269, 400, 455
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 4 cut(s) 9, 305, 449, 650
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 287, 341, 603
HpySE526I ACGT 1 cut(s) 86
Hsp92II CATG 3 cut(s) 298, 535, 711
Kzo9I GATC 3 cut(s) 193, 360, 664
LmnI GCTCC 3 cut(s) 278, 287, 640
Lsp1109I GCAGC 2 cut(s) 433, 484
LweI GCATC 1 cut(s) 659
MaeI CTAG 1 cut(s) 239
MaeII ACGT 1 cut(s) 86
MaeIII GTNAC 1 cut(s) 550
MalI GATC 3 cut(s) 195, 362, 666
MboI GATC 3 cut(s) 193, 360, 664
MboII GAAGA 3 cut(s) 61, 370, 581
MflI RGATCY 1 cut(s) 193
MluCI AATT 5 cut(s) 156, 418, 645, 677, 698
MlyI GAGTC 1 cut(s) 484
MmeI TCCRAC 1 cut(s) 221
MnlI CCTC 4 cut(s) 13, 21, 301, 578
MroXI GAANNNNTTC 3 cut(s) 53, 375, 388
MslI CAYNNNNRTG 1 cut(s) 384
MspI CCGG 1 cut(s) 494
MspR9I CCNGG 3 cut(s) 117, 276, 407
Mva1269I GAATGC 1 cut(s) 290
MvaI CCWGG 3 cut(s) 117, 276, 407
MwoI GCNNNNNNNGC 4 cut(s) 98, 287, 341, 603
NdeI CATATG 2 cut(s) 349, 556
NdeII GATC 3 cut(s) 193, 360, 664
NlaIII CATG 3 cut(s) 298, 535, 711
NlaIV GGNNCC 1 cut(s) 195
NmuCI GTSAC 1 cut(s) 550
PagI TCATGA 1 cut(s) 707
PcsI WCGNNNNNNNCGW 1 cut(s) 598
PctI GAATGC 1 cut(s) 290
PdmI GAANNNNTTC 3 cut(s) 53, 375, 388
PflMI CCANNNNNTGG 1 cut(s) 142
PfoI TCCNGGA 1 cut(s) 274
PkrI GCNGC 3 cut(s) 346, 448, 499
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
Psp6I CCWGG 3 cut(s) 115, 274, 405
PspGI CCWGG 3 cut(s) 115, 274, 405
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 2 cut(s) 403, 528
PstNI CAGNNNCTG 1 cut(s) 281
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 3 cut(s) 249, 397, 613
RsaNI GTAC 3 cut(s) 248, 396, 612
RseI CAYNNNNRTG 1 cut(s) 384
SatI GCNGC 3 cut(s) 345, 447, 498
Sau3AI GATC 3 cut(s) 193, 360, 664
Sau96I GGNCC 2 cut(s) 403, 528
SchI GAGTC 1 cut(s) 484
ScrFI CCNGG 3 cut(s) 117, 276, 407
SetI ASST 8 cut(s) 89, 121, 169, 244, 283, 524, 579, 643
SfaNI GCATC 1 cut(s) 659
SinI GGWCC 1 cut(s) 528
SmiMI CAYNNNNRTG 1 cut(s) 384
Sse9I AATT 5 cut(s) 156, 418, 645, 677, 698
SsiI CCGC 3 cut(s) 44, 345, 476
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 3 cut(s) 115, 274, 405
TaaI ACNGT 3 cut(s) 269, 400, 455
TaiI ACGT 1 cut(s) 89
TaqI TCGA 2 cut(s) 392, 663
TasI AATT 5 cut(s) 156, 418, 645, 677, 698
TatI WGTACW 3 cut(s) 247, 395, 611
TauI GCSGC 1 cut(s) 347
TscAI CASTG 3 cut(s) 405, 448, 696
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 2 cut(s) 446, 497
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 4 cut(s) 283, 384, 492, 569
TspRI CASTG 3 cut(s) 405, 448, 696
Van91I CCANNNNNTGG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 528
XapI RAATTY 2 cut(s) 677, 698
XmnI GAANNNNTTC 3 cut(s) 53, 375, 388
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.