Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001305

Physical Location & Seq

Genomic Coordinates Forward (+)

30011103 .. 30011533

Gene Structure 431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19047

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGTGGAAGTGGTTGAAGATTACAATGAGGAACTTGGGGTTACTGTAACTCACCTGCTGAAAGTTTCTGGTTTCAAGACAGTGTTTCGGTGTCATTTGGATCCCACAGCTGTCATGATGAGAATTCCCAAAGAACAGATGTTTAGATTGTCTCATCAAGTCCCTGCACACTTGCTTACAGGTGAAGAAGCTCTAAATGCTCCAAAAGGTTGTTGGGATCTTGATCCAGCAGCAACTCCGGCTGATCTTCTTGAGGTAATAACTGATGTTCAAGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

93

Amino Acids

10.4

Weight (kDa)

4.68

Isoelectric Point (pI)

27.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3444	PF11926	1 - 63	4.9e-17	Domain of unknown function (DUF3444)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380
fragaria_vesca	FvH4_4g23600 FvH4_4g23600 FvH4_4g23600 FvH4_6g05390 FvH4_6g05390
malus_domestica	MD13G1120800.v1.1 MD16G1120800.v1.1
prunus_persica	Prupe.1G224400_v2.0.a1
pyrus_communis	pycom16g10320
rosa_chinensis	RchiOBHm_Chr4g0430021 RchiOBHm_Chr4g0430031 RchiOBHm_Chr7g0212821 RchiOBHm_Chr7g0212831
rosa_laevigata	RLG00000002867 RLG00000007011 RLG00000007012
rosa_multiflora	Rmu_co8191322.1_g000001 Rmu_sc0000394.1_g000043 Rmu_sc0000394.1_g000047 Rmu_sc0013698.1_g000012 Rmu_ssc0000150.1_g000033 Rmu_ssc0000150.1_g000035
rosa_roxburghii	Rroxscaffold_3G00246530 Rroxscaffold_5G00371840 Rroxscaffold_5G00371850
rosa_rugosa	Rorug04G0239800 Rorug04G0239800 Rorug07G0136800
rosa_samantha	Rh4AG296700 Rh4AG296800 Rh4BG303000 Rh4BG303100 Rh4CG318500 Rh4CG318600 Rh4DG300300 Rh4DG300400 Rh7AG268400 Rh7BG263900 Rh7BG264000 Rh7CG287400 Rh7DG276500
rosa_wichuraiana	Rw4G025700 Rw4G025720 Rw7G023190 Rw7G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	63
Acc36I	ACCTGC	1 cut(s)	63
AclWI	GGATC	4 cut(s)	95, 108, 218, 225
AcsI	RAATTY	1 cut(s)	123
AgsI	TTSAA	3 cut(s)	17, 76, 272
AluBI	AGCT	2 cut(s)	110, 191
AluI	AGCT	2 cut(s)	110, 191
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	4 cut(s)	95, 108, 218, 225
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	123
AsuHPI	GGTGA	2 cut(s)	44, 194
BamHI	GGATCC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	156
BfuAI	ACCTGC	1 cut(s)	63
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	222
Bse8I	GATNNNNATC	1 cut(s)	222
BseJI	GATNNNNATC	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	242
BsgI	GTGCAG	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	146
Bsp143I	GATC	4 cut(s)	100, 217, 223, 244
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	63
BspPI	GGATC	4 cut(s)	95, 108, 218, 225
BssMI	GATC	4 cut(s)	100, 217, 223, 244
Bst4CI	ACNGT	2 cut(s)	46, 82
BstKTI	GATC	4 cut(s)	103, 220, 226, 247
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	4 cut(s)	100, 217, 223, 244
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 239
BstV1I	GCAGC	1 cut(s)	242
BstX2I	RGATCY	2 cut(s)	100, 217
BstYI	RGATCY	2 cut(s)	100, 217
BtsIMutI	CAGTG	1 cut(s)	87
BveI	ACCTGC	1 cut(s)	63
CciI	TCATGA	1 cut(s)	114
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	3 cut(s)	110, 191, 242
CviKI_1	RGCY	3 cut(s)	110, 191, 242
DpnI	GATC	4 cut(s)	102, 219, 225, 246
DpnII	GATC	4 cut(s)	100, 217, 223, 244
EcoRI	GAATTC	1 cut(s)	123
FaeI	CATG	1 cut(s)	118
FaiI	YATR	1 cut(s)	116
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
GluI	GCNGC	1 cut(s)	231
HapII	CCGG	1 cut(s)	239
Hin1II	CATG	1 cut(s)	118
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	2 cut(s)	44, 194
Hpy188III	TCNNGA	5 cut(s)	76, 115, 221, 251, 272
HpyCH4III	ACNGT	2 cut(s)	46, 82
HpyCH4V	TGCA	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 239
Hsp92II	CATG	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	100, 217, 223, 244
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	6 cut(s)	54, 68, 165, 177, 240, 252
Lsp1109I	GCAGC	1 cut(s)	242
MaeIII	GTNAC	2 cut(s)	40, 46
MalI	GATC	4 cut(s)	102, 219, 225, 246
MboI	GATC	4 cut(s)	100, 217, 223, 244
MboII	GAAGA	3 cut(s)	29, 197, 239
MflI	RGATCY	2 cut(s)	100, 217
MluCI	AATT	1 cut(s)	123
MnlI	CCTC	2 cut(s)	22, 247
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	2 cut(s)	197, 239
NdeII	GATC	4 cut(s)	100, 217, 223, 244
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	1 cut(s)	102
PagI	TCATGA	1 cut(s)	114
PaqCI	CACCTGC	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	102
PsuI	RGATCY	2 cut(s)	100, 217
PvuII	CAGCTG	1 cut(s)	110
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	4 cut(s)	100, 217, 223, 244
SetI	ASST	6 cut(s)	57, 112, 184, 193, 211, 258
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	1 cut(s)	123
TaaI	ACNGT	2 cut(s)	46, 82
TasI	AATT	1 cut(s)	123
TscAI	CASTG	1 cut(s)	87
TseI	GCWGC	1 cut(s)	230
TspRI	CASTG	1 cut(s)	87
XapI	RAATTY	1 cut(s)	123
XcmI	CCANNNNNNNNNTGG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.