Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001305

Physical Location & Seq

Genomic Coordinates Forward (+)

47386818 .. 47389469

Gene Structure 2652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG303100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGAGTGTAATAAAGATGAGGGCATCAGGGCAAAAGAGATTGCGGAGAGGAAGTTCGATGAAAAGGATCTAATGGGTGCAAAGAAATTTGCATTGAAGGCTCAATCCTTGTATCCAGGGATTGATGGTATTCAGCAACTTCTGGCGACACTTGATGTATATATGTGTGCAGAGAACAAGATAGGTGGGGAAGCTGATTGGTATGGCATAATTGGTGTGGATCCAGAAGCAGATGATGAGACAGTGAAGAAACAGTATAGAAAACTAGCTCTTAGTCTTCACCCTGATAAGAATAAGTTTGTAGGGGCAGATGGAGCATTCAACCTACTTAAGGAGGCATGGGATTTGTTGTCTGATAAAACTAAGAGAGTAGCATATGACAGGAGGAGGAATGTTTTTGTGCACCAAAAGGTAGAACACCAGAAAGTTTCAACTGCGCAAGGTTCACAGGGGGACAATGGTTCTGCACACCAGAAAGTTTCAACTGCAGGTCAGGGTTTGCATGGGGCCACTGGTACAACAACAAAAGGTAGAGCATCCAATGCAAAGGCTCAGACGGCTACCAAACGGGCAGCTCCCTCTTCCACTCCTGCTTCTGTCGAACCAATACCCAAAAGCTTTTGGAGTGAGTGTCCAAAATGCAGGATGCGATTCGAGTATTCAGGAAAGTATCTCAGGTGTAATATTTTTTGCCCGAATTGTAATAAACTATTTCAGGCAGTAGAGATAGTTCCACCAGCCATATGTGGTTCAAAGTCAACCACCCCATTTTATACAGGAAGGAGTACTCCAGCCTCTGAAAATGTTGGAGAGACAGGTTTTATCAGTCAAGTGTCACTTATGGAAAAGAGTGTAATCTGGGTTCCATTTTCAAGAGCTGCTGGTGCTTCTCAAGCTGCCAAAGCTGCAAGGGTAGACCTGCAGGGATCTGCCAGAGCTGCTCGCCCTTCTAAACCTGCCAAAGCCTCAAATGAGGAAAAGCGAGCATCTAAGAAAGGGAGGAAATGCAATATAGATGAGGAGACTCTAGCAAGAGCTAGAGAGAGTTTCACTCGGGATCTGAATGACGATGAAAGAAAGAAGAGGTTTGATGCCAGAAGAAAGAAGGACTTTGATGCCAGCAGAAGGAGGGATAATGATATCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

382

Amino Acids

42.22

Weight (kDa)

9.49

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	66 - 127	2.4e-20	DnaJ domain
Zn_ribbon_20	PF23551	207 - 241	4e-08	Zinc beta-ribbon domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380 AT5G37380
fragaria_vesca	FvH4_4g23600 FvH4_4g23600 FvH4_4g23600 FvH4_6g05390 FvH4_6g05390
malus_domestica	MD13G1120800.v1.1 MD16G1120800.v1.1
prunus_persica	Prupe.1G224400_v2.0.a1
pyrus_communis	pycom16g10320
rosa_chinensis	RchiOBHm_Chr4g0430021 RchiOBHm_Chr4g0430031 RchiOBHm_Chr7g0212821 RchiOBHm_Chr7g0212831
rosa_laevigata	RLG00000002867 RLG00000007011 RLG00000007012
rosa_multiflora	Rmu_co8191322.1_g000001 Rmu_sc0000394.1_g000043 Rmu_sc0000394.1_g000047 Rmu_sc0013698.1_g000012 Rmu_ssc0000150.1_g000033 Rmu_ssc0000150.1_g000035
rosa_roxburghii	Rroxscaffold_3G00246530 Rroxscaffold_5G00371840 Rroxscaffold_5G00371850
rosa_rugosa	Rorug04G0239800 Rorug04G0239800 Rorug07G0136800
rosa_samantha	Rh4AG296700 Rh4AG296800 Rh4BG303000 Rh4BG303100 Rh4CG318500 Rh4CG318600 Rh4DG300300 Rh4DG300400 Rh7AG268400 Rh7BG263900 Rh7BG264000 Rh7CG287400 Rh7DG276500
rosa_wichuraiana	Rw4G025700 Rw4G025720 Rw7G023190 Rw7G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	438
Acc36I	ACCTGC	3 cut(s)	479, 927, 964
AccI	GTMKAC	1 cut(s)	915
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	5 cut(s)	75, 215, 228, 934, 1065
AcsI	RAATTY	1 cut(s)	86
AfaI	GTAC	2 cut(s)	517, 787
AfiI	CCNNNNNNNGG	2 cut(s)	331, 1125
AflII	CTTAAG	1 cut(s)	329
AgsI	TTSAA	6 cut(s)	97, 322, 432, 483, 753, 873
AjnI	CCWGG	1 cut(s)	115
AloI	GAACNNNNNNTCC	2 cut(s)	38, 70
AluBI	AGCT	9 cut(s)	194, 269, 575, 618, 878, 896, 905, 938, 1037
AluI	AGCT	9 cut(s)	194, 269, 575, 618, 878, 896, 905, 938, 1037
Alw21I	GWGCWC	1 cut(s)	405
Alw26I	GTCTC	3 cut(s)	233, 806, 1016
Alw44I	GTGCAC	1 cut(s)	401
AlwI	GGATC	5 cut(s)	75, 215, 228, 934, 1065
AlwNI	CAGNNNCTG	1 cut(s)	797
Ama87I	CYCGRG	1 cut(s)	1053
AoxI	GGCC	1 cut(s)	507
ApaLI	GTGCAC	1 cut(s)	401
ApeKI	GCWGC	5 cut(s)	572, 878, 896, 905, 938
ApoI	RAATTY	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	1 cut(s)	507
AsuHPI	GGTGA	1 cut(s)	272
AvaI	CYCGRG	1 cut(s)	1053
BaeGI	GKGCMC	1 cut(s)	405
BamHI	GGATCC	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	5 cut(s)	584, 865, 883, 892, 925
BccI	CCATC	2 cut(s)	119, 305
BceAI	ACGGC	1 cut(s)	573
BciT130I	CCWGG	1 cut(s)	117
BciVI	GTATCC	1 cut(s)	123
BcoDI	GTCTC	3 cut(s)	233, 806, 1016
BfaI	CTAG	3 cut(s)	266, 1028, 1038
BfmI	CTRYAG	3 cut(s)	486, 920, 1145
BfrI	CTTAAG	1 cut(s)	329
BfuAI	ACCTGC	3 cut(s)	479, 927, 964
BfuI	GTATCC	1 cut(s)	123
BisI	GCNGC	5 cut(s)	573, 879, 897, 906, 939
BlsI	GCNGC	5 cut(s)	574, 880, 898, 907, 940
BmcAI	AGTACT	1 cut(s)	787
Bme1390I	CCNGG	1 cut(s)	117
BmeT110I	CYCGRG	1 cut(s)	1053
BmgT120I	GGNCC	1 cut(s)	507
BmiI	GGNNCC	3 cut(s)	222, 508, 864
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	6 cut(s)	33, 545, 636, 995, 1081, 1105
BpiI	GAAGAC	1 cut(s)	269
BplI	GAGNNNNNCTC	2 cut(s)	1036, 1068
BpmI	CTGGAG	1 cut(s)	774
BpuEI	CTTGAG	1 cut(s)	876
BsaJI	CCNNGG	1 cut(s)	116
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 616, 646
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 1125
Bse1I	ACTGG	1 cut(s)	517
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	2 cut(s)	536, 651
BseLI	CCNNNNNNNGG	2 cut(s)	331, 1125
BseMII	CTCAG	2 cut(s)	566, 688
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	2 cut(s)	400, 1034
BseSI	GKGCMC	1 cut(s)	405
BseXI	GCAGC	5 cut(s)	584, 865, 883, 892, 925
BsgI	GTGCAG	2 cut(s)	189, 450
BshFI	GGCC	1 cut(s)	509
BsiHKAI	GWGCWC	1 cut(s)	405
BsiHKCI	CYCGRG	1 cut(s)	1053
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	2 cut(s)	331, 1125
BsmAI	GTCTC	3 cut(s)	233, 806, 1016
BsmFI	GGGAC	1 cut(s)	467
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	509
BsoBI	CYCGRG	1 cut(s)	1053
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	4 cut(s)	67, 220, 926, 1057
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	1 cut(s)	509
BspCNI	CTCAG	2 cut(s)	565, 687
BspLI	GGNNCC	3 cut(s)	222, 508, 864
BspMAI	CTGCAG	2 cut(s)	490, 924
BspMI	ACCTGC	3 cut(s)	479, 927, 964
BspPI	GGATC	5 cut(s)	75, 215, 228, 934, 1065
BspTI	CTTAAG	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	517
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	4 cut(s)	67, 220, 926, 1057
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	244, 255
Bst6I	CTCTTC	2 cut(s)	586, 1076
BstAFI	CTTAAG	1 cut(s)	329
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstC8I	GCNNGC	3 cut(s)	943, 984, 1120
BstDEI	CTNAG	5 cut(s)	272, 363, 552, 674, 990
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstF5I	GGATG	2 cut(s)	536, 651
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	4 cut(s)	70, 223, 929, 1060
BstMAI	GTCTC	3 cut(s)	233, 806, 1016
BstMBI	GATC	4 cut(s)	67, 220, 926, 1057
BstMWI	GCNNNNNNNGC	9 cut(s)	98, 314, 542, 557, 884, 893, 902, 905, 938
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	3 cut(s)	486, 920, 1145
BstSLI	GKGCMC	1 cut(s)	405
BstV1I	GCAGC	5 cut(s)	584, 865, 883, 892, 925
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	4 cut(s)	67, 220, 926, 1057
BstYI	RGATCY	4 cut(s)	67, 220, 926, 1057
BsuI	GTATCC	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	509
BtsCI	GGATG	2 cut(s)	536, 651
BtsIMutI	CAGTG	2 cut(s)	249, 510
BveI	ACCTGC	3 cut(s)	479, 927, 964
Cac8I	GCNNGC	3 cut(s)	943, 984, 1120
CaiI	CAGNNNCTG	1 cut(s)	797
CfoI	GCGC	1 cut(s)	439
Cfr13I	GGNCC	1 cut(s)	507
Csp6I	GTAC	2 cut(s)	516, 786
CspCI	CAANNNNNGTGG	2 cut(s)	166, 201
CviAII	CATG	2 cut(s)	339, 503
CviQI	GTAC	2 cut(s)	516, 786
DdeI	CTNAG	5 cut(s)	272, 363, 552, 674, 990
DpnI	GATC	4 cut(s)	69, 222, 928, 1059
DpnII	GATC	4 cut(s)	67, 220, 926, 1057
Eam1104I	CTCTTC	2 cut(s)	586, 1076
EarI	CTCTTC	2 cut(s)	586, 1076
Eco32I	GATATC	1 cut(s)	1141
Eco88I	CYCGRG	1 cut(s)	1053
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	1141
FaeI	CATG	2 cut(s)	342, 506
FalI	AAGNNNNNCTT	4 cut(s)	822, 854, 1094, 1126
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	2 cut(s)	338, 502
FauNDI	CATATG	2 cut(s)	376, 743
FblI	GTMKAC	1 cut(s)	915
Fnu4HI	GCNGC	5 cut(s)	573, 879, 897, 906, 939
FokI	GGATG	2 cut(s)	523, 658
Fsp4HI	GCNGC	5 cut(s)	573, 879, 897, 906, 939
FspBI	CTAG	3 cut(s)	266, 1028, 1038
FspI	TGCGCA	1 cut(s)	438
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	5 cut(s)	573, 879, 897, 906, 939
GsuI	CTGGAG	1 cut(s)	774
HaeIII	GGCC	1 cut(s)	509
HhaI	GCGC	1 cut(s)	439
Hin1II	CATG	2 cut(s)	342, 506
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HincII	GTYRAC	1 cut(s)	759
HindII	GTYRAC	1 cut(s)	759
HindIII	AAGCTT	1 cut(s)	616
HinfI	GANTC	2 cut(s)	651, 1024
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	4 cut(s)	403, 446, 759, 916
Hpy188I	TCNGA	4 cut(s)	355, 555, 799, 1062
Hpy188III	TCNNGA	4 cut(s)	224, 663, 873, 1055
Hpy8I	GTNNAC	4 cut(s)	403, 446, 759, 916
HpyAV	CCTTC	5 cut(s)	91, 774, 957, 1099, 1119
HpyCH4III	ACNGT	2 cut(s)	244, 255
HpyF10VI	GCNNNNNNNGC	9 cut(s)	98, 314, 542, 557, 884, 893, 902, 905, 938
HpyF3I	CTNAG	5 cut(s)	272, 363, 552, 674, 990
Hsp92II	CATG	2 cut(s)	342, 506
HspAI	GCGC	1 cut(s)	437
Kzo9I	GATC	4 cut(s)	67, 220, 926, 1057
LmnI	GCTCC	2 cut(s)	314, 580
Lsp1109I	GCAGC	5 cut(s)	584, 865, 883, 892, 925
LweI	GCATC	6 cut(s)	33, 545, 636, 995, 1081, 1105
MaeI	CTAG	3 cut(s)	266, 1028, 1038
MaeIII	GTNAC	1 cut(s)	834
MalI	GATC	4 cut(s)	69, 222, 928, 1059
MboI	GATC	4 cut(s)	67, 220, 926, 1057
MboII	GAAGA	5 cut(s)	259, 269, 573, 1093, 1110
MflI	RGATCY	4 cut(s)	67, 220, 926, 1057
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	3 cut(s)	86, 210, 697
MlyI	GAGTC	1 cut(s)	1018
MmeI	TCCRAC	1 cut(s)	787
MseI	TTAA	1 cut(s)	330
MspCI	CTTAAG	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	9 cut(s)	98, 314, 542, 557, 884, 893, 902, 905, 938
NdeI	CATATG	2 cut(s)	376, 743
NdeII	GATC	4 cut(s)	67, 220, 926, 1057
NlaIII	CATG	2 cut(s)	342, 506
NlaIV	GGNNCC	3 cut(s)	222, 508, 864
NmuCI	GTSAC	1 cut(s)	834
NsbI	TGCGCA	1 cut(s)	438
PctI	GAATGC	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	651
PkrI	GCNGC	5 cut(s)	574, 880, 898, 907, 940
PleI	GAGTC	1 cut(s)	1018
PpsI	GAGTC	1 cut(s)	1018
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	3 cut(s)	222, 508, 864
PspPI	GGNCC	1 cut(s)	507
PsrI	GAACNNNNNNTAC	4 cut(s)	714, 746, 846, 878
PstI	CTGCAG	2 cut(s)	490, 924
PstNI	CAGNNNCTG	1 cut(s)	797
PsuI	RGATCY	4 cut(s)	67, 220, 926, 1057
RsaI	GTAC	2 cut(s)	517, 787
RsaNI	GTAC	2 cut(s)	516, 786
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	5 cut(s)	573, 879, 897, 906, 939
Sau3AI	GATC	4 cut(s)	67, 220, 926, 1057
Sau96I	GGNCC	1 cut(s)	507
SbfI	CCTGCAGG	1 cut(s)	924
ScaI	AGTACT	1 cut(s)	787
SchI	GAGTC	1 cut(s)	1018
ScrFI	CCNGG	1 cut(s)	117
SdaI	CCTGCAGG	1 cut(s)	924
SduI	GDGCHC	1 cut(s)	405
SfaNI	GCATC	6 cut(s)	33, 545, 636, 995, 1081, 1105
SfcI	CTRYAG	3 cut(s)	486, 920, 1145
SmlI	CTYRAG	2 cut(s)	329, 891
SmoI	CTYRAG	2 cut(s)	329, 891
Sse8387I	CCTGCAGG	1 cut(s)	924
Sse9I	AATT	3 cut(s)	86, 210, 697
SsiI	CCGC	1 cut(s)	44
SspI	AATATT	1 cut(s)	685
SspMI	CTAG	3 cut(s)	266, 1028, 1038
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	2 cut(s)	244, 255
TaqI	TCGA	3 cut(s)	57, 600, 654
TasI	AATT	3 cut(s)	86, 210, 697
TatI	WGTACW	1 cut(s)	785
TfiI	GAWTC	1 cut(s)	651
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	2 cut(s)	249, 517
TseFI	GTSAC	1 cut(s)	834
TseI	GCWGC	5 cut(s)	572, 878, 896, 905, 938
Tsp45I	GTSAC	1 cut(s)	834
TspDTI	ATGAA	2 cut(s)	75, 1086
TspRI	CASTG	2 cut(s)	249, 517
Vha464I	CTTAAG	1 cut(s)	329
VneI	GTGCAC	1 cut(s)	401
XagI	CCTNNNNNAGG	1 cut(s)	329
XapI	RAATTY	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	915
XspI	CTAG	3 cut(s)	266, 1028, 1038
ZrmI	AGTACT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.