AT5G40370

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006282
Physical Location & Seq
Reverse (-)
16147347 .. 16149256
1910 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40370.2

Sequence Viewer

Length: 336 bp
ATGGCGATGCAGAAAGCTAAGGAGATCGTTAACAGCGAATCAGTCGTTGTTTTCAGCAAGACTTATTGTCCATATTGCGTGAGAGTGAAGGAGCTTTTGCAACAATTGGGAGCTAAGTTCAAGGCCGTTGAGCTCGACACCGAAAGTGATGGTAGCCAAATTCAATCAGGTCTCGCAGAATGGACAGGACAACGTACCGTGCCTAATGTGTTTATAGGAGGAAATCACATCGGTGGCTGTGATGCAACATCAAACTTGCATAAAGATGGGAAGTTGGTTCCGCTGTTAACTGAAGCTGGAGCGATCGCAGGAAAGACTGCAACAACTTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

111

Amino Acids

11.76

Weight (kDa)

6.71

Isoelectric Point (pI)

33.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 43 - 102 1.5e-19 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 281
AcsI RAATTY 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 1 cut(s) 196
AgsI TTSAA 2 cut(s) 121, 164
AhdI GACNNNNNGTC 1 cut(s) 66
AleI CACNNNNGTG 1 cut(s) 231
AluBI AGCT 5 cut(s) 17, 94, 113, 133, 296
AluI AGCT 5 cut(s) 17, 94, 113, 133, 296
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 1 cut(s) 176
AoxI GGCC 1 cut(s) 123
ApoI RAATTY 1 cut(s) 159
AsiSI GCGATCGC 1 cut(s) 306
BanII GRGCYC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 135
BccI CCATC 2 cut(s) 143, 260
BceAI ACGGC 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 176
BmeRI GACNNNNNGTC 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 279
BmsI GCATC 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 318
Bpu10I CCTNAGC 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 176
Bsh1285I CGRYCG 1 cut(s) 306
BshFI GGCC 1 cut(s) 125
BsiEI CGRYCG 1 cut(s) 306
BsiHKAI GWGCWC 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 176
BsnI GGCC 1 cut(s) 125
Bso31I GGTCTC 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 2 cut(s) 24, 303
BspACI CCGC 1 cut(s) 281
BspANI GGCC 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 279
BspTNI GGTCTC 1 cut(s) 176
BssMI GATC 2 cut(s) 24, 303
Bst4CI ACNGT 1 cut(s) 199
BstDEI CTNAG 2 cut(s) 18, 114
BstKTI GATC 2 cut(s) 27, 306
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 2 cut(s) 24, 303
BstMCI CGRYCG 1 cut(s) 306
BsuRI GGCC 1 cut(s) 125
BtgZI GCGATG 1 cut(s) 20
Csp6I GTAC 1 cut(s) 195
CviJI RGCY 8 cut(s) 17, 94, 113, 125, 133, 156, 237, 296
CviKI_1 RGCY 8 cut(s) 17, 94, 113, 125, 133, 156, 237, 296
CviQI GTAC 1 cut(s) 195
DdeI CTNAG 2 cut(s) 18, 114
DpnI GATC 2 cut(s) 26, 305
DpnII GATC 2 cut(s) 24, 303
DriI GACNNNNNGTC 1 cut(s) 66
Eam1105I GACNNNNNGTC 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 176
Eco53kI GAGCTC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 312
EcoICRI GAGCTC 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 135
FaiI YATR 3 cut(s) 73, 215, 261
FriOI GRGCYC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 318
HaeIII GGCC 1 cut(s) 125
HincII GTYRAC 2 cut(s) 31, 288
HindII GTYRAC 2 cut(s) 31, 288
HinfI GANTC 1 cut(s) 38
HpaI GTTAAC 2 cut(s) 31, 288
Hpy166II GTNNAC 2 cut(s) 31, 288
Hpy8I GTNNAC 2 cut(s) 31, 288
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 5 cut(s) 10, 100, 245, 259, 320
HpyF3I CTNAG 2 cut(s) 18, 114
HpySE526I ACGT 1 cut(s) 193
KspAI GTTAAC 2 cut(s) 31, 288
Kzo9I GATC 2 cut(s) 24, 303
LmnI GCTCC 3 cut(s) 91, 110, 299
LpnPI CCDG 4 cut(s) 153, 171, 282, 294
LweI GCATC 1 cut(s) 232
MaeII ACGT 1 cut(s) 193
MalI GATC 2 cut(s) 26, 305
MboI GATC 2 cut(s) 24, 303
MfeI CAATTG 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 2 cut(s) 104, 159
MnlI CCTC 1 cut(s) 212
MseI TTAA 3 cut(s) 30, 287, 334
MslI CAYNNNNRTG 2 cut(s) 231, 264
MspA1I CMGCKG 1 cut(s) 283
MunI CAATTG 1 cut(s) 104
NdeII GATC 2 cut(s) 24, 303
NlaIV GGNNCC 1 cut(s) 279
OliI CACNNNNGTG 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PfeI GAWTC 1 cut(s) 38
Ple19I CGATCG 1 cut(s) 306
Psp124BI GAGCTC 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 279
PvuI CGATCG 1 cut(s) 306
RgaI GCGATCGC 1 cut(s) 306
RsaI GTAC 1 cut(s) 196
RsaNI GTAC 1 cut(s) 195
RseI CAYNNNNRTG 2 cut(s) 231, 264
SacI GAGCTC 1 cut(s) 135
SaqAI TTAA 3 cut(s) 30, 287, 334
Sau3AI GATC 2 cut(s) 24, 303
SduI GDGCHC 1 cut(s) 135
SetI ASST 7 cut(s) 19, 96, 115, 135, 172, 196, 298
SfaAI GCGATCGC 1 cut(s) 306
SfaNI GCATC 1 cut(s) 232
SgfI GCGATCGC 1 cut(s) 306
SmiMI CAYNNNNRTG 2 cut(s) 231, 264
Sse9I AATT 2 cut(s) 104, 159
SsiI CCGC 1 cut(s) 281
SstI GAGCTC 1 cut(s) 135
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 135
TasI AATT 2 cut(s) 104, 159
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 3 cut(s) 30, 287, 334
Tru9I TTAA 3 cut(s) 30, 287, 334
XapI RAATTY 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.