RLG00000031998

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006282
Physical Location & Seq
Reverse (-)
10120465 .. 10121576
1112 bp
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UTR
Exon/CDS
Intron
RLM00000031998

Sequence Viewer

Length: 315 bp
ATGAATGAGCGTACGACGTCGTTTCGCATCAGCAACAAGCTCTGTCCTTACTGTGTTTGCGTGAAGCAGCTCTTCGTTCTAAAATTGGGAGTCCAGTACAAGGCCATTGAATTGGACCAAGAGGGTGATGGTGGTGAGATACAATCGGCAGTTGCTGAGTGGACTGGACAGCAGACTCTGCCCAATGTTTGCGTTGGCGGAAACCACATTGGTGATTGTGACACAACCTGGGATTTGCACAAGGAAGGAAAACTGGTCCCTCTGCTCACTGAAGCTGGAGTTGTTGCCAAATTACAGGAGTTGGAAATAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

105

Amino Acids

11.42

Weight (kDa)

4.88

Isoelectric Point (pI)

36.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 70 6.2e-12 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 20
AciI CCGC 1 cut(s) 198
AcuI CTGAAG 1 cut(s) 291
AcyI GRCGYC 1 cut(s) 17
AfaI GTAC 2 cut(s) 13, 98
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 1 cut(s) 110
AjnI CCWGG 1 cut(s) 227
AleI CACNNNNGTG 1 cut(s) 210
AluBI AGCT 4 cut(s) 40, 70, 275, 312
AluI AGCT 4 cut(s) 40, 70, 275, 312
AlwNI CAGNNNCTG 2 cut(s) 155, 178
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 1 cut(s) 67
AspS9I GGNCC 2 cut(s) 115, 256
AsuHPI GGTGA 3 cut(s) 137, 146, 224
AvaII GGWCC 2 cut(s) 115, 256
BbvI GCAGC 1 cut(s) 79
BccI CCATC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 229
BfaI CTAG 1 cut(s) 313
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 229
Bme18I GGWCC 2 cut(s) 115, 256
BmgT120I GGNCC 2 cut(s) 115, 256
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 229
BmsI GCATC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 297
BsaHI GRCGYC 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 228
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse1I ACTGG 3 cut(s) 94, 169, 258
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 3 cut(s) 94, 169, 258
BseXI GCAGC 1 cut(s) 79
BshFI GGCC 1 cut(s) 104
BsiWI CGTACG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 1 cut(s) 104
BspACI CCGC 1 cut(s) 198
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 258
BspQI GCTCTTC 1 cut(s) 77
BsrI ACTGG 3 cut(s) 94, 169, 258
BssECI CCNNGG 1 cut(s) 228
BssNI GRCGYC 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 77
BstACI GRCGYC 1 cut(s) 17
BstAPI GCANNNNNTGC 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 156
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNI CCWGG 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 227
BstV1I GCAGC 1 cut(s) 79
BstXI CCANNNNNNTGG 1 cut(s) 112
BsuRI GGCC 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 267
CaiI CAGNNNCTG 2 cut(s) 155, 178
Cfr13I GGNCC 2 cut(s) 115, 256
Csp6I GTAC 2 cut(s) 12, 97
CviJI RGCY 5 cut(s) 40, 70, 104, 275, 312
CviKI_1 RGCY 5 cut(s) 40, 70, 104, 275, 312
CviQI GTAC 2 cut(s) 12, 97
DdeI CTNAG 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
EciI GGCGGA 1 cut(s) 213
Eco47I GGWCC 2 cut(s) 115, 256
Eco57I CTGAAG 1 cut(s) 291
EcoRII CCWGG 1 cut(s) 227
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FaqI GGGAC 1 cut(s) 242
Fnu4HI GCNGC 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 68
FspBI CTAG 1 cut(s) 313
GluI GCNGC 1 cut(s) 68
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 17
HinfI GANTC 2 cut(s) 90, 175
HphI GGTGA 3 cut(s) 137, 146, 224
Hpy166II GTNNAC 1 cut(s) 162
Hpy8I GTNNAC 1 cut(s) 162
Hpy99I CGWCG 2 cut(s) 19, 22
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 1 cut(s) 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 17
Hsp92I GRCGYC 1 cut(s) 17
LguI GCTCTTC 1 cut(s) 77
LpnPI CCDG 7 cut(s) 107, 150, 214, 239, 241, 261, 281
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 1 cut(s) 36
MaeI CTAG 1 cut(s) 313
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 218
MboII GAAGA 1 cut(s) 64
MluCI AATT 3 cut(s) 83, 110, 290
MlyI GAGTC 2 cut(s) 99, 169
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 2 cut(s) 115, 270
MslI CAYNNNNRTG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 229
MvaI CCWGG 1 cut(s) 229
MwoI GCNNNNNNNGC 1 cut(s) 178
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 218
OliI CACNNNNGTG 1 cut(s) 210
PciSI GCTCTTC 1 cut(s) 77
Pfl23II CGTACG 1 cut(s) 11
PkrI GCNGC 1 cut(s) 69
PleI GAGTC 2 cut(s) 98, 169
PpsI GAGTC 2 cut(s) 98, 169
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PspLI CGTACG 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 2 cut(s) 115, 256
PstNI CAGNNNCTG 2 cut(s) 155, 178
RsaI GTAC 2 cut(s) 13, 98
RsaNI GTAC 2 cut(s) 12, 97
RseI CAYNNNNRTG 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 77
SatI GCNGC 1 cut(s) 68
Sau96I GGNCC 2 cut(s) 115, 256
SchI GAGTC 2 cut(s) 99, 169
ScrFI CCNGG 1 cut(s) 229
SetI ASST 6 cut(s) 20, 42, 72, 230, 277, 314
SfaNI GCATC 1 cut(s) 36
SinI GGWCC 2 cut(s) 115, 256
SmiMI CAYNNNNRTG 1 cut(s) 210
Sse9I AATT 3 cut(s) 83, 110, 290
SsiI CCGC 1 cut(s) 198
SspMI CTAG 1 cut(s) 313
StyD4I CCNGG 1 cut(s) 227
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 1 cut(s) 20
TasI AATT 3 cut(s) 83, 110, 290
TatI WGTACW 1 cut(s) 96
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 2 cut(s) 115, 256
XcmI CCANNNNNNNNNTGG 1 cut(s) 125
XspI CTAG 1 cut(s) 313
ZraI GACGTC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.