Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024929.1

Orthogroup ID

OG0006282

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 487

Gene Structure 487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024929.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 191 bp

gtgatggtagtgagatacaatcggcgcttgctgagtggactggacagcataccctgcccaatgttttcgttggcggaaaccacattggtgattgtgacacaacctgggatctgcacaaggaaggaaaactggtccctctgctcactgaagctggagttgttgccaaattacaggagttggaaataagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

62

Amino Acids

6.67

Weight (kDa)

4.48

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40370 AT5G40370
fragaria_vesca	FvH4_6g51030
malus_domestica	MD09G1029300.v1.1 MD17G1031400.v1.1
prunus_persica	Prupe.3G288100_v2.0.a1
pyrus_communis	pycom17g02890
rosa_chinensis	RchiOBHm_Chr2g0172571 RchiOBHm_Chr5g0013221
rosa_laevigata	RLG00000021673 RLG00000022117 RLG00000031998
rosa_multiflora	Rmu_co8336177.1_g000001 Rmu_sc0000912.1_g000004 Rmu_sc0004521.1_g000012 Rmu_sc0024929.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063290 Rroxscaffold_1G00063350 Rroxscaffold_2G00079750
rosa_rugosa	Rorug02G0560000 Rorug05G0008000
rosa_samantha	Rh2AG636100 Rh2CG616300 Rh5DG098400 Rh7DG000300
rosa_wichuraiana	Rw2G052630 Rw5G008970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	103
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	2 cut(s)	151, 188
AluI	AGCT	2 cut(s)	151, 188
AlwI	GGATC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	105
BfaI	CTAG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	134
BmrFI	CCNGG	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	104
Bse1I	ACTGG	2 cut(s)	45, 134
BseBI	CCWGG	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	2 cut(s)	45, 134
BsgI	GTGCAG	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	108
BspACI	CCGC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	134
BspPI	GGATC	1 cut(s)	116
BsrI	ACTGG	2 cut(s)	45, 134
BssECI	CCNNGG	1 cut(s)	104
BssMI	GATC	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	105
BstAPI	GCANNNNNTGC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	32
BstH2I	RGCGCY	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	29
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	132
CviJI	RGCY	2 cut(s)	151, 188
CviKI_1	RGCY	2 cut(s)	151, 188
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
EciI	GGCGGA	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	103
FaiI	YATR	1 cut(s)	50
FaqI	GGGAC	1 cut(s)	118
FspBI	CTAG	1 cut(s)	189
GlaI	GCGC	1 cut(s)	26
GsuI	CTGGAG	1 cut(s)	173
HaeII	RGCGCY	1 cut(s)	28
HhaI	GCGC	1 cut(s)	27
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	38
Hpy8I	GTNNAC	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	1 cut(s)	32
HspAI	GCGC	1 cut(s)	25
Kzo9I	GATC	1 cut(s)	108
LpnPI	CCDG	7 cut(s)	26, 67, 90, 115, 117, 137, 157
MaeI	CTAG	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MflI	RGATCY	1 cut(s)	108
MluCI	AATT	1 cut(s)	166
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	1 cut(s)	146
MslI	CAYNNNNRTG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	54
NdeII	GATC	1 cut(s)	108
NlaIV	GGNNCC	1 cut(s)	134
NmuCI	GTSAC	1 cut(s)	94
OliI	CACNNNNGTG	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	132
PsuI	RGATCY	1 cut(s)	108
RseI	CAYNNNNRTG	1 cut(s)	86
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	105
SetI	ASST	3 cut(s)	106, 153, 190
SgeI	CNNG	9 cut(s)	40, 53, 66, 116, 117, 129, 142, 164, 184
SinI	GGWCC	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	103
TasI	AATT	1 cut(s)	166
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	94
Tsp45I	GTSAC	1 cut(s)	94
TspRI	CASTG	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	132
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.