MD09G1029300.v1.1

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0006282
Physical Location & Seq
Forward (+)
1811759 .. 1813555
1797 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1029300.v1.1.491

Sequence Viewer

Length: 324 bp
ATGGCATTGACGAAGGCGAAGGAGCTCGTGTCGACCAATTCGGTCGTCGTCTTCAGCAAGACGCATTGCCCGTTCTGCGTGAACGTGAAGCAGCTCTTGACTCAATTGGGAGCATCCTACAAGGCAATTGAGTTGGACTCTGAAAGTGACGGAGCTCAGATACAATCAGCTCTGGCAGAGTGGACTGGCCAGCGGACTGTGCCCAATGTTTTCATTAGTGGAAACCACATCGGTGGATGCGACAAAACAACGGCATTGCACAAGGAAGGTAAACTGTTCCCTCTGCTTACTCAAGCCGGAGCCGTTGCCAAAACTTCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

108

Amino Acids

11.35

Weight (kDa)

8.51

Isoelectric Point (pI)

30.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 15 - 77 7e-21 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 32
AciI CCGC 1 cut(s) 193
AcoI YGGCCR 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 37
AleI CACNNNNGTG 1 cut(s) 231
AluBI AGCT 4 cut(s) 25, 94, 155, 170
AluI AGCT 4 cut(s) 25, 94, 155, 170
Alw21I GWGCWC 2 cut(s) 27, 157
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 1 cut(s) 91
BaeGI GKGCMC 1 cut(s) 204
BalI TGGCCA 1 cut(s) 189
BanII GRGCYC 2 cut(s) 27, 157
BauI CACGAG 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 43
Bbv12I GWGCWC 2 cut(s) 27, 157
BbvI GCAGC 1 cut(s) 103
BceAI ACGGC 2 cut(s) 267, 287
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
BmiI GGNNCC 1 cut(s) 301
BmsI GCATC 2 cut(s) 122, 227
BpiI GAAGAC 1 cut(s) 43
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpuEI CTTGAG 1 cut(s) 276
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bse1I ACTGG 1 cut(s) 190
Bse3DI GCAATG 2 cut(s) 64, 254
BseGI GGATG 2 cut(s) 113, 242
BseMI GCAATG 2 cut(s) 64, 254
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 190
BseSI GKGCMC 1 cut(s) 204
BseXI GCAGC 1 cut(s) 103
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 1 cut(s) 189
BsiEI CGRYCG 1 cut(s) 45
BsiHKAI GWGCWC 2 cut(s) 27, 157
BsiSI CCGG 1 cut(s) 297
BsnI GGCC 1 cut(s) 189
Bsp1286I GDGCHC 3 cut(s) 27, 157, 204
BspACI CCGC 1 cut(s) 193
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 301
BsrDI GCAATG 2 cut(s) 64, 254
BsrI ACTGG 1 cut(s) 190
BssSI CACGAG 1 cut(s) 26
Bst2BI CACGAG 1 cut(s) 26
Bst4CI ACNGT 2 cut(s) 199, 276
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 156
BstF5I GGATG 2 cut(s) 113, 242
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 2 cut(s) 75, 199
BstSLI GKGCMC 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 233
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 2 cut(s) 113, 242
Cac8I GCNNGC 1 cut(s) 191
CseI GACGC 1 cut(s) 70
CviJI RGCY 7 cut(s) 25, 94, 155, 170, 189, 296, 302
CviKI_1 RGCY 7 cut(s) 25, 94, 155, 170, 189, 296, 302
DdeI CTNAG 1 cut(s) 156
EaeI YGGCCR 1 cut(s) 187
Ecl136II GAGCTC 2 cut(s) 25, 155
Eco24I GRGCYC 2 cut(s) 27, 157
Eco53kI GAGCTC 2 cut(s) 25, 155
Eco57I CTGAAG 1 cut(s) 37
EcoICRI GAGCTC 2 cut(s) 25, 155
EcoT38I GRGCYC 2 cut(s) 27, 157
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 1 cut(s) 92
FokI GGATG 2 cut(s) 100, 249
FriOI GRGCYC 2 cut(s) 27, 157
Fsp4HI GCNGC 1 cut(s) 92
GluI GCNGC 1 cut(s) 92
HaeIII GGCC 1 cut(s) 189
HapII CCGG 1 cut(s) 297
HgaI GACGC 1 cut(s) 70
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 2 cut(s) 100, 137
HpaII CCGG 1 cut(s) 297
Hpy166II GTNNAC 4 cut(s) 33, 82, 183, 272
Hpy188I TCNGA 2 cut(s) 142, 159
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 4 cut(s) 33, 82, 183, 272
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 3 cut(s) 7, 13, 260
HpyCH4III ACNGT 2 cut(s) 199, 276
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 259
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 199
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 84
LmnI GCTCC 4 cut(s) 22, 110, 152, 299
LpnPI CCDG 4 cut(s) 158, 171, 203, 310
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 2 cut(s) 122, 227
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 146
MboII GAAGA 1 cut(s) 43
MfeI CAATTG 2 cut(s) 104, 126
MhlI GDGCHC 3 cut(s) 27, 157, 204
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 3 cut(s) 37, 104, 126
MluNI TGGCCA 1 cut(s) 189
MlyI GAGTC 2 cut(s) 94, 131
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 1 cut(s) 291
Mox20I TGGCCA 1 cut(s) 189
MscI TGGCCA 1 cut(s) 189
MseI TTAA 1 cut(s) 322
MslI CAYNNNNRTG 1 cut(s) 231
Msp20I TGGCCA 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 1 cut(s) 297
MunI CAATTG 2 cut(s) 104, 126
MwoI GCNNNNNNNGC 2 cut(s) 75, 199
NlaIV GGNNCC 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 146
OliI CACNNNNGTG 1 cut(s) 231
PcsI WCGNNNNNNNCGW 2 cut(s) 68, 237
PkrI GCNGC 1 cut(s) 93
PleI GAGTC 2 cut(s) 94, 131
PpsI GAGTC 2 cut(s) 94, 131
Psp124BI GAGCTC 2 cut(s) 27, 157
PspN4I GGNNCC 1 cut(s) 301
RseI CAYNNNNRTG 1 cut(s) 231
SacI GAGCTC 2 cut(s) 27, 157
SalI GTCGAC 1 cut(s) 31
SaqAI TTAA 1 cut(s) 322
SatI GCNGC 1 cut(s) 92
SchI GAGTC 2 cut(s) 94, 131
SduI GDGCHC 3 cut(s) 27, 157, 204
SetI ASST 6 cut(s) 27, 87, 96, 157, 172, 271
SfaNI GCATC 2 cut(s) 122, 227
SmiMI CAYNNNNRTG 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 3 cut(s) 37, 104, 126
SsiI CCGC 1 cut(s) 193
SstI GAGCTC 2 cut(s) 27, 157
TaaI ACNGT 2 cut(s) 199, 276
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 32
TaqII GACCGA 1 cut(s) 31
TasI AATT 3 cut(s) 37, 104, 126
Tru1I TTAA 1 cut(s) 322
Tru9I TTAA 1 cut(s) 322
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 202
TspGWI ACGGA 1 cut(s) 165
XmiI GTMKAC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.