FvH4_6g51030

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006282
Physical Location & Seq
Reverse (-)
37890530 .. 37891966
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51030.t1

Sequence Viewer

Length: 324 bp
ATGGCATTGCCAAAGGCTAAGGAGCTCGTCTCGTCCAACACGGTCGTCGTCTTCAGCAAGTCGTATTGCCCCTACTGTGTGACAGTGAAGAAGCTCTTCACTCAATTGGGAGCCGATTTTAAAGCCATTGAATTGGACCAAGAGAGTGATGGAAGTGAGCTACAAGCAGCACTGAAAGAGTGGACTGGACAGAAGACTGTGCCAAATGTGTTCATTGGTGGAAACCATATTGGTGGATGTGACGCTACTCAGGCCCTGCACAATCAAGGAAAGCTAGTCCCTCTGCTCACTGAAGCTGGAGCTGTTGGCCAAACCACTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

108

Amino Acids

11.32

Weight (kDa)

6.05

Isoelectric Point (pI)

27.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 15 - 77 3.9e-22 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 307
AcuI CTGAAG 2 cut(s) 37, 312
AgsI TTSAA 1 cut(s) 131
AluBI AGCT 6 cut(s) 25, 94, 160, 274, 296, 302
AluI AGCT 6 cut(s) 25, 94, 160, 274, 296, 302
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 34
AlwNI CAGNNNCTG 1 cut(s) 256
AoxI GGCC 2 cut(s) 252, 307
ApeKI GCWGC 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 95
AspS9I GGNCC 2 cut(s) 136, 253
AvaII GGWCC 1 cut(s) 136
BalI TGGCCA 1 cut(s) 309
BanII GRGCYC 1 cut(s) 27
BbsI GAAGAC 2 cut(s) 43, 200
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 179
BccI CCATC 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 1 cut(s) 275
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 2 cut(s) 136, 253
BmiI GGNNCC 1 cut(s) 112
BpiI GAAGAC 2 cut(s) 43, 200
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BpmI CTGGAG 1 cut(s) 318
Bpu10I CCTNAGC 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 190
Bse3DI GCAATG 1 cut(s) 5
BseGI GGATG 1 cut(s) 242
BseMI GCAATG 1 cut(s) 5
BseMII CTCAG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 179
BsgI GTGCAG 1 cut(s) 242
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 2 cut(s) 254, 309
BsiEI CGRYCG 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 27
BslFI GGGAC 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 34
BsmBI CGTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 2 cut(s) 254, 309
Bsp1286I GDGCHC 1 cut(s) 27
BspANI GGCC 2 cut(s) 254, 309
BspCNI CTCAG 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 112
BspQI GCTCTTC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 5
BsrI ACTGG 1 cut(s) 190
Bst4CI ACNGT 4 cut(s) 43, 77, 85, 199
Bst6I CTCTTC 1 cut(s) 101
BstDEI CTNAG 2 cut(s) 18, 249
BstF5I GGATG 1 cut(s) 242
BstMAI GTCTC 1 cut(s) 34
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 179
BstV2I GAAGAC 2 cut(s) 43, 200
BstXI CCANNNNNNTGG 2 cut(s) 133, 233
BsuRI GGCC 2 cut(s) 254, 309
BtsCI GGATG 1 cut(s) 242
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 4 cut(s) 90, 170, 288, 315
CaiI CAGNNNCTG 1 cut(s) 256
Cfr13I GGNCC 2 cut(s) 136, 253
CseI GACGC 1 cut(s) 251
DdeI CTNAG 2 cut(s) 18, 249
DraI TTTAAA 1 cut(s) 121
EaeI YGGCCR 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Ecl136II GAGCTC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 136
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 2 cut(s) 37, 312
EcoICRI GAGCTC 1 cut(s) 25
EcoO109I RGGNCCY 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 34
FaiI YATR 1 cut(s) 228
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 1 cut(s) 263
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 1 cut(s) 249
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 1 cut(s) 275
GluI GCNGC 1 cut(s) 168
GsuI CTGGAG 1 cut(s) 318
HaeIII GGCC 2 cut(s) 254, 309
HgaI GACGC 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 183
Hpy8I GTNNAC 1 cut(s) 183
Hpy99I CGWCG 1 cut(s) 50
HpyCH4III ACNGT 4 cut(s) 43, 77, 85, 199
HpyCH4V TGCA 1 cut(s) 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 2 cut(s) 18, 249
LguI GCTCTTC 1 cut(s) 101
LmnI GCTCC 3 cut(s) 22, 110, 299
LpnPI CCDG 4 cut(s) 171, 236, 269, 282
Lsp1109I GCAGC 1 cut(s) 179
MaeI CTAG 1 cut(s) 275
MaeIII GTNAC 2 cut(s) 79, 239
MboII GAAGA 4 cut(s) 43, 88, 100, 205
MfeI CAATTG 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 27
MlsI TGGCCA 1 cut(s) 309
MluCI AATT 2 cut(s) 104, 131
MluNI TGGCCA 1 cut(s) 309
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 1 cut(s) 291
Mox20I TGGCCA 1 cut(s) 309
MroXI GAANNNNTTC 1 cut(s) 95
MscI TGGCCA 1 cut(s) 309
MseI TTAA 2 cut(s) 120, 322
MslI CAYNNNNRTG 1 cut(s) 231
Msp20I TGGCCA 1 cut(s) 309
MunI CAATTG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 251
NlaIV GGNNCC 1 cut(s) 112
NmuCI GTSAC 2 cut(s) 79, 239
PciSI GCTCTTC 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 95
PkrI GCNGC 1 cut(s) 169
Psp124BI GAGCTC 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 2 cut(s) 136, 253
PstNI CAGNNNCTG 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 231
SacI GAGCTC 1 cut(s) 27
SapI GCTCTTC 1 cut(s) 101
SaqAI TTAA 2 cut(s) 120, 322
SatI GCNGC 1 cut(s) 168
Sau96I GGNCC 2 cut(s) 136, 253
SduI GDGCHC 1 cut(s) 27
SetI ASST 6 cut(s) 27, 96, 162, 276, 298, 304
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 231
Sse9I AATT 2 cut(s) 104, 131
SspMI CTAG 1 cut(s) 275
SstI GAGCTC 1 cut(s) 27
TaaI ACNGT 4 cut(s) 43, 77, 85, 199
TasI AATT 2 cut(s) 104, 131
Tru1I TTAA 2 cut(s) 120, 322
Tru9I TTAA 2 cut(s) 120, 322
TscAI CASTG 4 cut(s) 90, 177, 295, 322
TseFI GTSAC 2 cut(s) 79, 239
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 2 cut(s) 79, 239
TspDTI ATGAA 1 cut(s) 202
TspRI CASTG 4 cut(s) 90, 177, 295, 322
VpaK11BI GGWCC 1 cut(s) 136
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.