Rh5DG098400

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0006282
Physical Location & Seq
Reverse (-)
8998733 .. 8999938
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG098400.1

Sequence Viewer

Length: 360 bp
ATGGCGCTGGCCAAGGTGAAGGAGCTCGTCTCGTCCAATCCGGTACTCATCTTCAGGTTCTCTCTTCTTCTGTGTGTCTGTATATATAGAATTGTCGATCGTTTTGAACCAATTTGGAAATTTGACGATGAGATTTTGTTTCGCAGCAACAAGCTTTGTCCCTACTGCGTGTGCGTGAAGCAGCTCTTCGTTCTAAAATTGGAAGTCCAGTACAAGGCCATTGAATTGGACCAAGAGAGTGATGGTAGTGAGATACAATCGGCGCTTGCTGAGTGGACTGGACAGCATACCCTGCCCAATGTTTTCGTTGGCGGAAACCACATTGGTGATTGTGACAGTAAGTTCGACTTGACTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

119

Amino Acids

13.6

Weight (kDa)

5.08

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 51 - 108 6e-13 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 312
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 1 cut(s) 119
AcuI CTGAAG 1 cut(s) 37
AfaI GTAC 2 cut(s) 45, 212
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 2 cut(s) 107, 224
AleI CACNNNNGTG 1 cut(s) 324
AluBI AGCT 3 cut(s) 25, 154, 184
AluI AGCT 3 cut(s) 25, 154, 184
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 34
AoxI GGCC 2 cut(s) 9, 216
ApeKI GCWGC 2 cut(s) 144, 181
ApoI RAATTY 1 cut(s) 119
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AspLEI GCGC 2 cut(s) 7, 265
AspS9I GGNCC 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 28, 338
AvaII GGWCC 1 cut(s) 229
BalI TGGCCA 1 cut(s) 11
BanII GRGCYC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 2 cut(s) 156, 193
BccI CCATC 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 34
BfoI RGCGCY 2 cut(s) 8, 266
BisI GCNGC 2 cut(s) 145, 182
BlsI GCNGC 2 cut(s) 146, 183
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 229
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BsaJI CCNNGG 1 cut(s) 12
BsaWI WCCGGW 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 2 cut(s) 208, 283
BseDI CCNNGG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 2 cut(s) 208, 283
BseXI GCAGC 2 cut(s) 156, 193
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 2 cut(s) 11, 218
BsiEI CGRYCG 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 1 cut(s) 41
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 34
BsmBI CGTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 144
BsnI GGCC 2 cut(s) 11, 218
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 97
BspACI CCGC 1 cut(s) 312
BspANI GGCC 2 cut(s) 11, 218
BspCNI CTCAG 1 cut(s) 262
BspQI GCTCTTC 1 cut(s) 191
BsrI ACTGG 2 cut(s) 208, 283
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 1 cut(s) 97
BssT1I CCWWGG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 338
Bst6I CTCTTC 2 cut(s) 69, 191
BstAPI GCANNNNNTGC 1 cut(s) 292
BstC8I GCNNGC 2 cut(s) 9, 267
BstDEI CTNAG 1 cut(s) 270
BstH2I RGCGCY 2 cut(s) 8, 266
BstHHI GCGC 2 cut(s) 7, 265
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 1 cut(s) 97
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstV1I GCAGC 2 cut(s) 156, 193
BstXI CCANNNNNNTGG 1 cut(s) 226
BsuRI GGCC 2 cut(s) 11, 218
Cac8I GCNNGC 2 cut(s) 9, 267
CfoI GCGC 2 cut(s) 7, 265
Cfr13I GGNCC 1 cut(s) 229
Csp6I GTAC 2 cut(s) 44, 211
CviJI RGCY 5 cut(s) 11, 25, 154, 184, 218
CviKI_1 RGCY 5 cut(s) 11, 25, 154, 184, 218
CviQI GTAC 2 cut(s) 44, 211
DdeI CTNAG 1 cut(s) 270
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 2 cut(s) 69, 191
EarI CTCTTC 2 cut(s) 69, 191
EciI GGCGGA 1 cut(s) 327
Ecl136II GAGCTC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 229
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 12
Esp3I CGTCTC 1 cut(s) 34
FaiI YATR 4 cut(s) 83, 85, 87, 288
FalI AAGNNNNNCTT 3 cut(s) 170, 202, 332
FaqI GGGAC 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 145, 182
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 2 cut(s) 145, 182
GlaI GCGC 2 cut(s) 6, 264
GluI GCNGC 2 cut(s) 145, 182
HaeII RGCGCY 2 cut(s) 8, 266
HaeIII GGCC 2 cut(s) 11, 218
HapII CCGG 1 cut(s) 41
HhaI GCGC 2 cut(s) 7, 265
Hin6I GCGC 2 cut(s) 5, 263
HinP1I GCGC 2 cut(s) 5, 263
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 1 cut(s) 352
HpaII CCGG 1 cut(s) 41
HphI GGTGA 2 cut(s) 28, 338
Hpy166II GTNNAC 1 cut(s) 276
Hpy8I GTNNAC 1 cut(s) 276
HpyAV CCTTC 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpyF3I CTNAG 1 cut(s) 270
HspAI GCGC 2 cut(s) 5, 263
Kzo9I GATC 1 cut(s) 97
LguI GCTCTTC 1 cut(s) 191
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 5 cut(s) 40, 54, 221, 264, 305
Lsp1109I GCAGC 2 cut(s) 156, 193
MaeIII GTNAC 1 cut(s) 332
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 4 cut(s) 43, 56, 59, 178
MhlI GDGCHC 1 cut(s) 27
MlsI TGGCCA 1 cut(s) 11
MluCI AATT 5 cut(s) 90, 111, 119, 197, 224
MluNI TGGCCA 1 cut(s) 11
MlyI GAGTC 1 cut(s) 346
Mox20I TGGCCA 1 cut(s) 11
MscI TGGCCA 1 cut(s) 11
MslI CAYNNNNRTG 1 cut(s) 324
Msp20I TGGCCA 1 cut(s) 11
MspI CCGG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 292
NdeII GATC 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 332
OliI CACNNNNGTG 1 cut(s) 324
PciSI GCTCTTC 1 cut(s) 191
PkrI GCNGC 2 cut(s) 146, 183
Ple19I CGATCG 1 cut(s) 100
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
Psp124BI GAGCTC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 229
PvuI CGATCG 1 cut(s) 100
RsaI GTAC 2 cut(s) 45, 212
RsaNI GTAC 2 cut(s) 44, 211
RseI CAYNNNNRTG 1 cut(s) 324
SacI GAGCTC 1 cut(s) 27
SapI GCTCTTC 1 cut(s) 191
SatI GCNGC 2 cut(s) 145, 182
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 229
SchI GAGTC 1 cut(s) 346
SduI GDGCHC 1 cut(s) 27
SetI ASST 5 cut(s) 18, 27, 59, 156, 186
SinI GGWCC 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 324
Sse9I AATT 5 cut(s) 90, 111, 119, 197, 224
SsiI CCGC 1 cut(s) 312
SstI GAGCTC 1 cut(s) 27
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 338
TaqI TCGA 2 cut(s) 96, 345
TasI AATT 5 cut(s) 90, 111, 119, 197, 224
TatI WGTACW 1 cut(s) 210
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 2 cut(s) 144, 181
Tsp45I GTSAC 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 229
XapI RAATTY 1 cut(s) 119
XcmI CCANNNNNNNNNTGG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.