Rh7DG000300

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0006282
Physical Location & Seq
Reverse (-)
24238 .. 24982
745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG000300.1

Sequence Viewer

Length: 270 bp
ATGGCGTTGGGCAAGGTGAAGGAGCTCGTCTCGTCCAATCCGGTAGTCATCTTCAGCAACAAGTTTTGTCCTTACTGTGTTTGCGTGAAGCAGCTCTTCGTTCTAAAATTGGGAGTCCAGTACAAGGCCATTGAATTGGACCAAGAGAGTGATGGTAGTGAGATACAATCGGCGCTTGCTGAGTGGACTGGACAGCATACTCTGCCCAATGTTTTCGTTGGCGGATACCACATTGGTGATTGTGACAGTAAGTTCGACTTGACTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

89

Amino Acids

9.8

Weight (kDa)

5.13

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 15 - 78 1.5e-15 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 222
AcuI CTGAAG 1 cut(s) 37
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 1 cut(s) 134
AleI CACNNNNGTG 1 cut(s) 234
AluBI AGCT 2 cut(s) 25, 94
AluI AGCT 2 cut(s) 25, 94
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 34
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 91
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 2 cut(s) 28, 248
AvaII GGWCC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 103
BccI CCATC 1 cut(s) 146
BciVI GTATCC 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 34
BfoI RGCGCY 1 cut(s) 176
BfuI GTATCC 1 cut(s) 218
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BsaWI WCCGGW 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 2 cut(s) 118, 193
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 2 cut(s) 118, 193
BseXI GCAGC 1 cut(s) 103
BshFI GGCC 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 34
BsmBI CGTCTC 1 cut(s) 34
BsnI GGCC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 27
BspACI CCGC 1 cut(s) 222
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 172
BspQI GCTCTTC 1 cut(s) 101
BsrI ACTGG 2 cut(s) 118, 193
Bst4CI ACNGT 2 cut(s) 77, 248
Bst6I CTCTTC 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 180
BstH2I RGCGCY 1 cut(s) 176
BstHHI GCGC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 103
BstXI CCANNNNNNTGG 1 cut(s) 136
BsuI GTATCC 1 cut(s) 218
BsuRI GGCC 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 177
CfoI GCGC 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 121
CviJI RGCY 3 cut(s) 25, 94, 128
CviKI_1 RGCY 3 cut(s) 25, 94, 128
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
EciI GGCGGA 1 cut(s) 237
Ecl136II GAGCTC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 139
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 34
FaiI YATR 1 cut(s) 198
FalI AAGNNNNNCTT 3 cut(s) 80, 112, 242
Fnu4HI GCNGC 1 cut(s) 92
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 92
GlaI GCGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 92
HaeII RGCGCY 1 cut(s) 176
HaeIII GGCC 1 cut(s) 128
HapII CCGG 1 cut(s) 41
HhaI GCGC 1 cut(s) 175
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HinfI GANTC 2 cut(s) 114, 262
HpaII CCGG 1 cut(s) 41
HphI GGTGA 2 cut(s) 28, 248
Hpy166II GTNNAC 1 cut(s) 186
Hpy8I GTNNAC 1 cut(s) 186
HpyAV CCTTC 1 cut(s) 13
HpyCH4III ACNGT 2 cut(s) 77, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 1 cut(s) 180
HspAI GCGC 1 cut(s) 173
LguI GCTCTTC 1 cut(s) 101
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 3 cut(s) 54, 131, 174
Lsp1109I GCAGC 1 cut(s) 103
MaeIII GTNAC 1 cut(s) 242
MboII GAAGA 2 cut(s) 43, 88
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 2 cut(s) 107, 134
MlyI GAGTC 2 cut(s) 123, 256
MslI CAYNNNNRTG 1 cut(s) 234
MspI CCGG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 242
OliI CACNNNNGTG 1 cut(s) 234
PciSI GCTCTTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 93
PleI GAGTC 2 cut(s) 122, 256
PpsI GAGTC 2 cut(s) 122, 256
Psp124BI GAGCTC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 139
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 234
SacI GAGCTC 1 cut(s) 27
SapI GCTCTTC 1 cut(s) 101
SatI GCNGC 1 cut(s) 92
Sau96I GGNCC 1 cut(s) 139
SchI GAGTC 2 cut(s) 123, 256
SduI GDGCHC 1 cut(s) 27
SetI ASST 3 cut(s) 18, 27, 96
SinI GGWCC 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 234
Sse9I AATT 2 cut(s) 107, 134
SsiI CCGC 1 cut(s) 222
SstI GAGCTC 1 cut(s) 27
TaaI ACNGT 2 cut(s) 77, 248
TaqI TCGA 1 cut(s) 255
TasI AATT 2 cut(s) 107, 134
TatI WGTACW 1 cut(s) 120
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.