Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000912.1

Orthogroup ID

OG0006282

Physical Location & Seq

Genomic Coordinates Forward (+)

37813 .. 38744

Gene Structure 932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000912.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atggcattgcccaaggcaaaggagctcgtttcctccaactccgtcatcgtcttcagcaagtcgtactgtcccttctgcgtgacggtgaagaagctcttctctgaaatgggagtcaatttcaaggccattgaattggaccaagagagtgatggaggtcagctacaagcagcactggctgagcttactggacagcggactgtgccgaatgtgttcatcggtggaaaccacatcggtggatgtgacgcaactacggccctgcacaaggaaggaaagctggctcctctgctcactcaagccggagctgttgccaaatcctctgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

107

Amino Acids

11.15

Weight (kDa)

7.72

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40370 AT5G40370
fragaria_vesca	FvH4_6g51030
malus_domestica	MD09G1029300.v1.1 MD17G1031400.v1.1
prunus_persica	Prupe.3G288100_v2.0.a1
pyrus_communis	pycom17g02890
rosa_chinensis	RchiOBHm_Chr2g0172571 RchiOBHm_Chr5g0013221
rosa_laevigata	RLG00000021673 RLG00000022117 RLG00000031998
rosa_multiflora	Rmu_co8336177.1_g000001 Rmu_sc0000912.1_g000004 Rmu_sc0004521.1_g000012 Rmu_sc0024929.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063290 Rroxscaffold_1G00063350 Rroxscaffold_2G00079750
rosa_rugosa	Rorug02G0560000 Rorug05G0008000
rosa_samantha	Rh2AG636100 Rh2CG616300 Rh5DG098400 Rh7DG000300
rosa_wichuraiana	Rw2G052630 Rw5G008970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	193
AcuI	CTGAAG	1 cut(s)	37
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	121, 131
AleI	CACNNNNGTG	1 cut(s)	231
AluBI	AGCT	6 cut(s)	25, 94, 160, 181, 274, 302
AluI	AGCT	6 cut(s)	25, 94, 160, 181, 274, 302
Alw21I	GWGCWC	1 cut(s)	27
AoxI	GGCC	2 cut(s)	123, 252
ApeKI	GCWGC	1 cut(s)	167
Asp700I	GAANNNNTTC	2 cut(s)	95, 209
AspS9I	GGNCC	2 cut(s)	136, 253
AsuHPI	GGTGA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	27
BarI	GAAGNNNNNNTAC	2 cut(s)	56, 88
BbsI	GAAGAC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	267
BisI	GCNGC	1 cut(s)	168
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	169
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	136, 253
BmiI	GGNNCC	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	43
Bpu1102I	GCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	2 cut(s)	177, 190
Bse3DI	GCAATG	1 cut(s)	5
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMI	GCAATG	1 cut(s)	5
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	2 cut(s)	177, 190
BseRI	GAGGAG	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	125, 254
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	2 cut(s)	125, 254
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp1720I	GCTNAGC	1 cut(s)	177
BspACI	CCGC	1 cut(s)	193
BspANI	GGCC	2 cut(s)	125, 254
BspCNI	CTCAG	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	279
BspQI	GCTCTTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	5
BsrI	ACTGG	2 cut(s)	177, 190
BssECI	CCNNGG	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	12
Bst4CI	ACNGT	3 cut(s)	68, 85, 199
Bst6I	CTCTTC	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	177
BstENI	CCTNNNNNAGG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	242
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 199, 251
BstV1I	GCAGC	1 cut(s)	179
BstV2I	GAAGAC	1 cut(s)	43
BstXI	CCANNNNNNTGG	2 cut(s)	133, 233
BsuRI	GGCC	2 cut(s)	125, 254
BtsCI	GGATG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	170
Cac8I	GCNNGC	1 cut(s)	276
Cfr13I	GGNCC	2 cut(s)	136, 253
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	64
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	25
EcoNI	CCTNNNNNAGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	12
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	1 cut(s)	249
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	168
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	125, 254
HapII	CCGG	1 cut(s)	297
HgaI	GACGC	1 cut(s)	251
HinfI	GANTC	1 cut(s)	111
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	1 cut(s)	97
Hpy188I	TCNGA	1 cut(s)	103
HpyAV	CCTTC	2 cut(s)	82, 260
HpyCH4III	ACNGT	3 cut(s)	68, 85, 199
HpyCH4V	TGCA	1 cut(s)	259
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 199, 251
HpyF3I	CTNAG	1 cut(s)	177
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	3 cut(s)	22, 283, 299
LpnPI	CCDG	5 cut(s)	158, 171, 260, 269, 310
Lsp1109I	GCAGC	1 cut(s)	179
MaeIII	GTNAC	2 cut(s)	79, 239
MboII	GAAGA	3 cut(s)	43, 88, 100
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	2 cut(s)	115, 131
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	3 cut(s)	43, 146, 291
MroXI	GAANNNNTTC	2 cut(s)	95, 209
MseI	TTAA	1 cut(s)	322
MslI	CAYNNNNRTG	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	193
MspI	CCGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	3 cut(s)	173, 199, 251
NlaIV	GGNNCC	1 cut(s)	279
NmuCI	GTSAC	2 cut(s)	79, 239
OliI	CACNNNNGTG	1 cut(s)	231
PciSI	GCTCTTC	1 cut(s)	101
PdmI	GAANNNNTTC	2 cut(s)	95, 209
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Psp124BI	GAGCTC	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	2 cut(s)	136, 253
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	231
SacI	GAGCTC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	322
SatI	GCNGC	1 cut(s)	168
Sau96I	GGNCC	2 cut(s)	136, 253
SchI	GAGTC	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	7 cut(s)	27, 96, 157, 162, 183, 276, 304
SinI	GGWCC	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
Sse9I	AATT	2 cut(s)	115, 131
SsiI	CCGC	1 cut(s)	193
SstI	GAGCTC	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	3 cut(s)	68, 85, 199
TasI	AATT	2 cut(s)	115, 131
Tru1I	TTAA	1 cut(s)	322
Tru9I	TTAA	1 cut(s)	322
TscAI	CASTG	1 cut(s)	177
TseFI	GTSAC	2 cut(s)	79, 239
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	2 cut(s)	79, 239
TspDTI	ATGAA	1 cut(s)	202
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	1 cut(s)	177
VpaK11BI	GGWCC	1 cut(s)	136
XagI	CCTNNNNNAGG	1 cut(s)	260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	146
XmnI	GAANNNNTTC	2 cut(s)	95, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.