RLG00000022117

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006282
Physical Location & Seq
Reverse (-)
81050253 .. 81051457
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022117

Sequence Viewer

Length: 354 bp
ATGTCACGAACACGGTGGTTAGGTAGTCACCGGAATCTTGATGACGACCGTCTCAACGTCTTTTACTTTCCCTACTCGTCATCCACCAAGTCGTATTGTCCCTTCTGCGTGACGGTGAAGAAGCTCTTCTCTGAAATGGGAGCCAATTTCAAGGCCATTGAATTGGACCAAGAGAGCGATGGAAGTCAGCTACAAGCAGCACTGGCTGAGCTGACTGGACAGACGACTGTGCCGAATGTGTTCATCGGTGGAAACCATATTGGTGGATGCGACGCAACTACGGCCCTGCACAAGGAAGGAAAGCTGGCCCCTCTGCTCACTCAAGCCGGAGCTGTTGCCAAATCCTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

118

Amino Acids

12.6

Weight (kDa)

6.81

Isoelectric Point (pI)

50.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 29 - 87 4e-18 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 2 cut(s) 151, 161
AluBI AGCT 5 cut(s) 124, 190, 211, 304, 332
AluI AGCT 5 cut(s) 124, 190, 211, 304, 332
Alw26I GTCTC 1 cut(s) 56
AoxI GGCC 3 cut(s) 153, 282, 306
ApeKI GCWGC 1 cut(s) 197
Asp700I GAANNNNTTC 2 cut(s) 125, 239
AspS9I GGNCC 3 cut(s) 166, 283, 307
AsuHPI GGTGA 2 cut(s) 20, 127
AvaII GGWCC 1 cut(s) 166
BarI GAAGNNNNNNTAC 2 cut(s) 86, 118
BbvI GCAGC 1 cut(s) 209
BccI CCATC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 297
BcoDI GTCTC 1 cut(s) 56
BisI GCNGC 1 cut(s) 198
BlpI GCTNAGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 3 cut(s) 166, 283, 307
BmiI GGNNCC 2 cut(s) 142, 309
BmsI GCATC 1 cut(s) 257
BoxI GACNNNNGTC 1 cut(s) 48
Bpu1102I GCTNAGC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 306
BsaWI WCCGGW 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse1I ACTGG 2 cut(s) 207, 220
BseGI GGATG 2 cut(s) 80, 272
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 2 cut(s) 207, 220
BseXI GCAGC 1 cut(s) 209
BsgI GTGCAG 1 cut(s) 272
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 3 cut(s) 155, 284, 308
BsiEI CGRYCG 1 cut(s) 49
BsiSI CCGG 2 cut(s) 31, 327
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 1 cut(s) 56
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 84
BsnI GGCC 3 cut(s) 155, 284, 308
Bsp1720I GCTNAGC 1 cut(s) 207
BspANI GGCC 3 cut(s) 155, 284, 308
BspCNI CTCAG 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 142, 309
BspQI GCTCTTC 1 cut(s) 131
BsrI ACTGG 2 cut(s) 207, 220
Bst4CI ACNGT 4 cut(s) 15, 50, 115, 229
Bst6I CTCTTC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 207
BstENI CCTNNNNNAGG 1 cut(s) 290
BstF5I GGATG 2 cut(s) 80, 272
BstMAI GTCTC 1 cut(s) 56
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 2 cut(s) 203, 281
BstPAI GACNNNNGTC 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 209
BstXI CCANNNNNNTGG 2 cut(s) 163, 263
BsuRI GGCC 3 cut(s) 155, 284, 308
BtgZI GCGATG 1 cut(s) 192
BtsCI GGATG 2 cut(s) 80, 272
BtsIMutI CAGTG 1 cut(s) 200
Cac8I GCNNGC 1 cut(s) 306
Cfr13I GGNCC 3 cut(s) 166, 283, 307
CseI GACGC 1 cut(s) 281
DdeI CTNAG 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 166
EcoNI CCTNNNNNAGG 1 cut(s) 290
Esp3I CGTCTC 1 cut(s) 56
FaiI YATR 1 cut(s) 258
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FaqI GGGAC 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 2 cut(s) 67, 279
Fsp4HI GCNGC 1 cut(s) 198
GluI GCNGC 1 cut(s) 198
HaeIII GGCC 3 cut(s) 155, 284, 308
HapII CCGG 2 cut(s) 31, 327
HgaI GACGC 1 cut(s) 281
HinfI GANTC 1 cut(s) 34
HpaII CCGG 2 cut(s) 31, 327
HphI GGTGA 2 cut(s) 20, 127
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 2 cut(s) 6, 38
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 2 cut(s) 112, 290
HpyCH4III ACNGT 4 cut(s) 15, 50, 115, 229
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 289
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 281
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 57
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 2 cut(s) 140, 329
LpnPI CCDG 6 cut(s) 44, 188, 201, 290, 299, 340
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 1 cut(s) 257
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 3 cut(s) 3, 26, 109
MboII GAAGA 2 cut(s) 118, 130
MluCI AATT 2 cut(s) 145, 161
MnlI CCTC 1 cut(s) 321
MroXI GAANNNNTTC 2 cut(s) 125, 239
MseI TTAA 1 cut(s) 352
MslI CAYNNNNRTG 1 cut(s) 261
MspI CCGG 2 cut(s) 31, 327
MwoI GCNNNNNNNGC 2 cut(s) 203, 281
NlaIV GGNNCC 2 cut(s) 142, 309
NmuCI GTSAC 3 cut(s) 3, 26, 109
PciSI GCTCTTC 1 cut(s) 131
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PdmI GAANNNNTTC 2 cut(s) 125, 239
PfeI GAWTC 1 cut(s) 34
PkrI GCNGC 1 cut(s) 199
PshAI GACNNNNGTC 1 cut(s) 48
PspN4I GGNNCC 2 cut(s) 142, 309
PspPI GGNCC 3 cut(s) 166, 283, 307
RseI CAYNNNNRTG 1 cut(s) 261
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 352
SatI GCNGC 1 cut(s) 198
Sau96I GGNCC 3 cut(s) 166, 283, 307
SetI ASST 7 cut(s) 25, 60, 126, 192, 213, 306, 334
SfaNI GCATC 1 cut(s) 257
SinI GGWCC 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 321
SmoI CTYRAG 1 cut(s) 321
Sse9I AATT 2 cut(s) 145, 161
TaaI ACNGT 4 cut(s) 15, 50, 115, 229
TaiI ACGT 1 cut(s) 60
TasI AATT 2 cut(s) 145, 161
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 1 cut(s) 352
Tru9I TTAA 1 cut(s) 352
TscAI CASTG 1 cut(s) 207
TseFI GTSAC 3 cut(s) 3, 26, 109
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 3 cut(s) 3, 26, 109
TspDTI ATGAA 1 cut(s) 232
TspRI CASTG 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 166
XagI CCTNNNNNAGG 1 cut(s) 290
XcmI CCANNNNNNNNNTGG 1 cut(s) 176
XmnI GAANNNNTTC 2 cut(s) 125, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.