MD17G1031400.v1.1

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0006282
Physical Location & Seq
Forward (+)
2278874 .. 2281353
2480 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1031400.v1.1.491

Sequence Viewer

Length: 324 bp
ATGGCATTGACAAAGGCGCAGGAGCTCGTGTCCTCCAATTCGGTCGTCGTCTTCAGCAAGACGAATTGCCCGTTCTGCGTGAACGTGAAGCAGCTCTTGACTCAATTGGGAGTCACCTACAAGGCCATTGAGTTGGACAAAGAAAGTGACGGAGCTCAGATACAATCAGCTTTGGGAGAGTGGACTGGCCTGCGGACTGTGCCCAATGTTTTCATTGGTGGAAACCACATCGGTGGATGTGACAAAACAACGGCGTTGCACAAGGAAGGAAAATTGGTCCCTCTGCTGACTCAAGCCGGAGCTGTTGCCAAAACTTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

108

Amino Acids

11.26

Weight (kDa)

8.5

Isoelectric Point (pI)

31.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 15 - 77 2.6e-21 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 193
AcuI CTGAAG 1 cut(s) 37
AleI CACNNNNGTG 1 cut(s) 231
AluBI AGCT 5 cut(s) 25, 94, 155, 170, 302
AluI AGCT 5 cut(s) 25, 94, 155, 170, 302
Alw21I GWGCWC 2 cut(s) 27, 157
AoxI GGCC 2 cut(s) 123, 187
ApeKI GCWGC 1 cut(s) 91
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 1 cut(s) 277
BaeGI GKGCMC 1 cut(s) 204
BanII GRGCYC 2 cut(s) 27, 157
BauI CACGAG 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 43
Bbv12I GWGCWC 2 cut(s) 27, 157
BbvI GCAGC 1 cut(s) 103
BceAI ACGGC 1 cut(s) 267
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 1 cut(s) 279
BpiI GAAGAC 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 276
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bse1I ACTGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 242
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 190
BseSI GKGCMC 1 cut(s) 204
BseXI GCAGC 1 cut(s) 103
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 2 cut(s) 125, 189
BsiEI CGRYCG 1 cut(s) 45
BsiHKAI GWGCWC 2 cut(s) 27, 157
BsiSI CCGG 1 cut(s) 297
BslFI GGGAC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 2 cut(s) 125, 189
Bsp1286I GDGCHC 3 cut(s) 27, 157, 204
BspACI CCGC 1 cut(s) 193
BspANI GGCC 2 cut(s) 125, 189
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 279
BsrI ACTGG 1 cut(s) 190
BssSI CACGAG 1 cut(s) 26
Bst2BI CACGAG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 242
BstHHI GCGC 1 cut(s) 19
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 2 cut(s) 75, 199
BstSLI GKGCMC 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 43
BstXI CCANNNNNNTGG 2 cut(s) 133, 233
BsuRI GGCC 2 cut(s) 125, 189
BtsCI GGATG 1 cut(s) 242
Cac8I GCNNGC 1 cut(s) 191
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 277
CviJI RGCY 8 cut(s) 25, 94, 125, 155, 170, 189, 296, 302
CviKI_1 RGCY 8 cut(s) 25, 94, 125, 155, 170, 189, 296, 302
DdeI CTNAG 1 cut(s) 156
Ecl136II GAGCTC 2 cut(s) 25, 155
Eco24I GRGCYC 2 cut(s) 27, 157
Eco47I GGWCC 1 cut(s) 277
Eco53kI GAGCTC 2 cut(s) 25, 155
Eco57I CTGAAG 1 cut(s) 37
EcoICRI GAGCTC 2 cut(s) 25, 155
EcoT38I GRGCYC 2 cut(s) 27, 157
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 1 cut(s) 263
Fnu4HI GCNGC 1 cut(s) 92
FokI GGATG 1 cut(s) 249
FriOI GRGCYC 2 cut(s) 27, 157
Fsp4HI GCNGC 1 cut(s) 92
GlaI GCGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 92
HaeIII GGCC 2 cut(s) 125, 189
HapII CCGG 1 cut(s) 297
HhaI GCGC 1 cut(s) 19
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HinfI GANTC 3 cut(s) 100, 111, 289
HpaII CCGG 1 cut(s) 297
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 2 cut(s) 82, 183
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 2 cut(s) 82, 183
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 259
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 199
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 84
HspAI GCGC 1 cut(s) 17
LmnI GCTCC 3 cut(s) 22, 152, 299
LpnPI CCDG 4 cut(s) 5, 171, 203, 310
Lsp1109I GCAGC 1 cut(s) 103
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 3 cut(s) 112, 146, 239
MboII GAAGA 1 cut(s) 43
MfeI CAATTG 1 cut(s) 104
MhlI GDGCHC 3 cut(s) 27, 157, 204
MluCI AATT 4 cut(s) 37, 64, 104, 272
MlyI GAGTC 3 cut(s) 94, 120, 283
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 2 cut(s) 43, 291
MseI TTAA 1 cut(s) 322
MslI CAYNNNNRTG 1 cut(s) 231
MspI CCGG 1 cut(s) 297
MunI CAATTG 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 75, 199
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 3 cut(s) 112, 146, 239
OliI CACNNNNGTG 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 68
PkrI GCNGC 1 cut(s) 93
PleI GAGTC 3 cut(s) 94, 119, 283
PpsI GAGTC 3 cut(s) 94, 119, 283
Psp124BI GAGCTC 2 cut(s) 27, 157
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 231
SacI GAGCTC 2 cut(s) 27, 157
SaqAI TTAA 1 cut(s) 322
SatI GCNGC 1 cut(s) 92
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 3 cut(s) 94, 120, 283
SduI GDGCHC 3 cut(s) 27, 157, 204
SetI ASST 7 cut(s) 27, 87, 96, 119, 157, 172, 304
SinI GGWCC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 4 cut(s) 37, 64, 104, 272
SsiI CCGC 1 cut(s) 193
SstI GAGCTC 2 cut(s) 27, 157
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 87
TaqII GACCGA 1 cut(s) 31
TasI AATT 4 cut(s) 37, 64, 104, 272
Tru1I TTAA 1 cut(s) 322
Tru9I TTAA 1 cut(s) 322
TseFI GTSAC 3 cut(s) 112, 146, 239
TseI GCWGC 1 cut(s) 91
Tsp45I GTSAC 3 cut(s) 112, 146, 239
TspDTI ATGAA 1 cut(s) 202
TspGWI ACGGA 1 cut(s) 165
VpaK11BI GGWCC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.