Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8336177.1

Orthogroup ID

OG0006282

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 414

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8336177.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 179 bp

gtgatggaggtcagctacaagcagcactggctgagcttactggacagcggactgtgccgaatgtgttcatcggtggaaaccacatcggtggatgtgacgcaactacggccctgcacaaggaaggaaagctggctcctctgctcactcaagccggagctgttgccaaatcctctgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

58

Amino Acids

5.73

Weight (kDa)

6.92

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40370 AT5G40370
fragaria_vesca	FvH4_6g51030
malus_domestica	MD09G1029300.v1.1 MD17G1031400.v1.1
prunus_persica	Prupe.3G288100_v2.0.a1
pyrus_communis	pycom17g02890
rosa_chinensis	RchiOBHm_Chr2g0172571 RchiOBHm_Chr5g0013221
rosa_laevigata	RLG00000021673 RLG00000022117 RLG00000031998
rosa_multiflora	Rmu_co8336177.1_g000001 Rmu_sc0000912.1_g000004 Rmu_sc0004521.1_g000012 Rmu_sc0024929.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063290 Rroxscaffold_1G00063350 Rroxscaffold_2G00079750
rosa_rugosa	Rorug02G0560000 Rorug05G0008000
rosa_samantha	Rh2AG636100 Rh2CG616300 Rh5DG098400 Rh7DG000300
rosa_wichuraiana	Rw2G052630 Rw5G008970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	117
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	4 cut(s)	15, 36, 129, 157
AluI	AGCT	4 cut(s)	15, 36, 129, 157
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	22
Asp700I	GAANNNNTTC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	34
BceAI	ACGGC	1 cut(s)	122
BisI	GCNGC	1 cut(s)	23
BlpI	GCTNAGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	108
BmiI	GGNNCC	1 cut(s)	134
Bpu1102I	GCTNAGC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse1I	ACTGG	2 cut(s)	32, 45
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	2 cut(s)	32, 45
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	117
BsnI	GGCC	1 cut(s)	109
Bsp1720I	GCTNAGC	1 cut(s)	32
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	32, 45
Bst4CI	ACNGT	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	32
BstENI	CCTNNNNNAGG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 54, 106
BstV1I	GCAGC	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	108
CseI	GACGC	1 cut(s)	106
CviJI	RGCY	8 cut(s)	15, 31, 36, 109, 129, 133, 151, 157
CviKI_1	RGCY	8 cut(s)	15, 31, 36, 109, 129, 133, 151, 157
DdeI	CTNAG	1 cut(s)	32
EcoNI	CCTNNNNNAGG	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	23
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	1 cut(s)	23
GluI	GCNGC	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	109
HapII	CCGG	1 cut(s)	152
HgaI	GACGC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	54
HpyCH4V	TGCA	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 54, 106
HpyF3I	CTNAG	1 cut(s)	32
LmnI	GCTCC	2 cut(s)	138, 154
LpnPI	CCDG	5 cut(s)	13, 26, 115, 124, 165
Lsp1109I	GCAGC	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	94
MnlI	CCTC	1 cut(s)	146
MroXI	GAANNNNTTC	1 cut(s)	64
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	48
MspI	CCGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	3 cut(s)	28, 54, 106
NlaIV	GGNNCC	1 cut(s)	134
NmuCI	GTSAC	1 cut(s)	94
OliI	CACNNNNGTG	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	108
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	1 cut(s)	23
Sau96I	GGNCC	1 cut(s)	108
SetI	ASST	5 cut(s)	12, 17, 38, 131, 159
SgeI	CNNG	8 cut(s)	31, 40, 53, 123, 129, 142, 160, 164
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SsiI	CCGC	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	54
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	32
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	57
TspRI	CASTG	1 cut(s)	32
XagI	CCTNNNNNAGG	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.