Rroxscaffold_2G00079750

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006282
Physical Location & Seq
Forward (+)
2731952 .. 2733125
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00079750.1

Sequence Viewer

Length: 324 bp
ATGGCATTGCCCAAGGCAAAGGAGCTCGTTTCCTCCAACTCCGTCATCGTCTTCAGCAAGTCGTATTGTCCCTTCTGCGTGACGGTGAAGAAGCTCTTCTCTGAAATGGGAGTCAATTTCAAGGCCATTGAATTGGACCAAGAGAGTGATGGAAGTCAGCTACAAGCAGCACTGGCTGAGCTGACTGGACAGCAGACTGTGCCGAATGTGTTCATCGGTGGAAACCATATCGGTGGATGTGACGCAACTACGGCCCTGCACAAGGAAGGAAAGCTGGCTCCTCTGCTCACTCAAGCTGGAGCTGTTGCCAAAGCCTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

107

Amino Acids

11.14

Weight (kDa)

6.71

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 15 - 77 4.4e-21 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 2 cut(s) 121, 131
AluBI AGCT 7 cut(s) 25, 94, 160, 181, 274, 296, 302
AluI AGCT 7 cut(s) 25, 94, 160, 181, 274, 296, 302
Alw21I GWGCWC 1 cut(s) 27
AoxI GGCC 2 cut(s) 123, 252
ApeKI GCWGC 1 cut(s) 167
Asp700I GAANNNNTTC 2 cut(s) 95, 209
AspS9I GGNCC 2 cut(s) 136, 253
AsuHPI GGTGA 1 cut(s) 97
AvaII GGWCC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 27
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
BbsI GAAGAC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 179
BccI CCATC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 267
BisI GCNGC 1 cut(s) 168
BlpI GCTNAGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 169
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 2 cut(s) 136, 253
BmiI GGNNCC 1 cut(s) 279
BpiI GAAGAC 1 cut(s) 43
BpmI CTGGAG 1 cut(s) 318
Bpu1102I GCTNAGC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse1I ACTGG 2 cut(s) 177, 190
Bse3DI GCAATG 1 cut(s) 5
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 242
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMI GCAATG 1 cut(s) 5
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 2 cut(s) 177, 190
BseRI GAGGAG 1 cut(s) 270
BseXI GCAGC 1 cut(s) 179
BsgI GTGCAG 1 cut(s) 242
BshFI GGCC 2 cut(s) 125, 254
BsiHKAI GWGCWC 1 cut(s) 27
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 54
BsnI GGCC 2 cut(s) 125, 254
Bsp1286I GDGCHC 1 cut(s) 27
Bsp1720I GCTNAGC 1 cut(s) 177
BspANI GGCC 2 cut(s) 125, 254
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 279
BspQI GCTCTTC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 5
BsrI ACTGG 2 cut(s) 177, 190
BssECI CCNNGG 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 85, 199
Bst6I CTCTTC 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 177
BstENI CCTNNNNNAGG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 242
BstMWI GCNNNNNNNGC 3 cut(s) 173, 199, 251
BstV1I GCAGC 1 cut(s) 179
BstV2I GAAGAC 1 cut(s) 43
BstXI CCANNNNNNTGG 2 cut(s) 133, 233
BsuRI GGCC 2 cut(s) 125, 254
BtsCI GGATG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 276
Cfr13I GGNCC 2 cut(s) 136, 253
CseI GACGC 1 cut(s) 251
DdeI CTNAG 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Ecl136II GAGCTC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 136
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 25
EcoNI CCTNNNNNAGG 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 12
FaiI YATR 1 cut(s) 228
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 1 cut(s) 249
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 168
GsuI CTGGAG 1 cut(s) 318
HaeIII GGCC 2 cut(s) 125, 254
HgaI GACGC 1 cut(s) 251
HinfI GANTC 1 cut(s) 111
HphI GGTGA 1 cut(s) 97
Hpy188I TCNGA 1 cut(s) 103
HpyAV CCTTC 2 cut(s) 82, 260
HpyCH4III ACNGT 2 cut(s) 85, 199
HpyCH4V TGCA 1 cut(s) 259
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 199, 251
HpyF3I CTNAG 1 cut(s) 177
LguI GCTCTTC 1 cut(s) 101
LmnI GCTCC 3 cut(s) 22, 283, 299
LpnPI CCDG 5 cut(s) 158, 171, 260, 269, 282
Lsp1109I GCAGC 1 cut(s) 179
MaeIII GTNAC 2 cut(s) 79, 239
MboII GAAGA 3 cut(s) 43, 88, 100
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 2 cut(s) 115, 131
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 2 cut(s) 43, 291
MroXI GAANNNNTTC 2 cut(s) 95, 209
MseI TTAA 1 cut(s) 322
MslI CAYNNNNRTG 1 cut(s) 231
MwoI GCNNNNNNNGC 3 cut(s) 173, 199, 251
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 2 cut(s) 79, 239
PciSI GCTCTTC 1 cut(s) 101
PdmI GAANNNNTTC 2 cut(s) 95, 209
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp124BI GAGCTC 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 2 cut(s) 136, 253
RseI CAYNNNNRTG 1 cut(s) 231
SacI GAGCTC 1 cut(s) 27
SapI GCTCTTC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 322
SatI GCNGC 1 cut(s) 168
Sau96I GGNCC 2 cut(s) 136, 253
SchI GAGTC 1 cut(s) 120
SduI GDGCHC 1 cut(s) 27
SetI ASST 7 cut(s) 27, 96, 162, 183, 276, 298, 304
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 2 cut(s) 115, 131
SstI GAGCTC 1 cut(s) 27
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 2 cut(s) 85, 199
TasI AATT 2 cut(s) 115, 131
Tru1I TTAA 1 cut(s) 322
Tru9I TTAA 1 cut(s) 322
TscAI CASTG 1 cut(s) 177
TseFI GTSAC 2 cut(s) 79, 239
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 2 cut(s) 79, 239
TspDTI ATGAA 1 cut(s) 202
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 136
XagI CCTNNNNNAGG 1 cut(s) 260
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XmnI GAANNNNTTC 2 cut(s) 95, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.