Rw2G052630

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0006282
Physical Location & Seq
Reverse (-)
80542670 .. 80543580
911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G052630.1

Sequence Viewer

Length: 318 bp
ATGGCATTGCCCAAGGCAAAGGAGCTCGTTTCCTCCAACTCCGTCATCGTCTTCAGCAAGTCGTACTGTCCCTTCTGCGTGACGGTGAAGAAGCTCTTCTCTGAAATGGGAGTCAATTTCAAGGCCATTGAATTGGACCAAGAGAGTCATCAGCTACAAGCAGCACTGGCTGAGCTGACTGGACAGCGGACTGTGCCGAATGTGTTCATCGGTGGAAACCACATCGGTGGATGTGACGCAACTACGGCCCTGCACAAGGAAGGAAAGCTGGCTCCTCTGCTCACTCAAGCCGGAGCTGTTGCCAAATCCTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

105

Amino Acids

11.06

Weight (kDa)

8.51

Isoelectric Point (pI)

36.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 15 - 75 7.8e-22 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 37
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 2 cut(s) 121, 131
AleI CACNNNNGTG 1 cut(s) 225
AluBI AGCT 6 cut(s) 25, 94, 154, 175, 268, 296
AluI AGCT 6 cut(s) 25, 94, 154, 175, 268, 296
Alw21I GWGCWC 1 cut(s) 27
AoxI GGCC 2 cut(s) 123, 246
ApeKI GCWGC 1 cut(s) 161
Asp700I GAANNNNTTC 2 cut(s) 95, 203
AspS9I GGNCC 2 cut(s) 136, 247
AsuHPI GGTGA 1 cut(s) 97
AvaII GGWCC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 27
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
BbsI GAAGAC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 261
BisI GCNGC 1 cut(s) 162
BlpI GCTNAGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 163
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 2 cut(s) 136, 247
BmiI GGNNCC 1 cut(s) 273
BpiI GAAGAC 1 cut(s) 43
Bpu1102I GCTNAGC 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse1I ACTGG 2 cut(s) 171, 184
Bse3DI GCAATG 1 cut(s) 5
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 236
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 5
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 2 cut(s) 171, 184
BseRI GAGGAG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 173
BsgI GTGCAG 1 cut(s) 236
BshFI GGCC 2 cut(s) 125, 248
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 1 cut(s) 291
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 54
BsnI GGCC 2 cut(s) 125, 248
Bsp1286I GDGCHC 1 cut(s) 27
Bsp1720I GCTNAGC 1 cut(s) 171
BspACI CCGC 1 cut(s) 187
BspANI GGCC 2 cut(s) 125, 248
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 273
BspQI GCTCTTC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 5
BsrI ACTGG 2 cut(s) 171, 184
BssECI CCNNGG 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 12
Bst4CI ACNGT 3 cut(s) 68, 85, 193
Bst6I CTCTTC 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 171
BstENI CCTNNNNNAGG 1 cut(s) 254
BstF5I GGATG 1 cut(s) 236
BstMWI GCNNNNNNNGC 3 cut(s) 167, 193, 245
BstV1I GCAGC 1 cut(s) 173
BstV2I GAAGAC 1 cut(s) 43
BstXI CCANNNNNNTGG 2 cut(s) 133, 227
BsuRI GGCC 2 cut(s) 125, 248
BtsCI GGATG 1 cut(s) 236
BtsIMutI CAGTG 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 270
Cfr13I GGNCC 2 cut(s) 136, 247
CseI GACGC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 64
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Ecl136II GAGCTC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 136
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 25
EcoNI CCTNNNNNAGG 1 cut(s) 254
EcoT14I CCWWGG 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 12
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 1 cut(s) 243
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 162
GluI GCNGC 1 cut(s) 162
HaeIII GGCC 2 cut(s) 125, 248
HapII CCGG 1 cut(s) 291
HgaI GACGC 1 cut(s) 245
HinfI GANTC 2 cut(s) 111, 145
HpaII CCGG 1 cut(s) 291
HphI GGTGA 1 cut(s) 97
Hpy188I TCNGA 1 cut(s) 103
HpyAV CCTTC 2 cut(s) 82, 254
HpyCH4III ACNGT 3 cut(s) 68, 85, 193
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 193, 245
HpyF3I CTNAG 1 cut(s) 171
LguI GCTCTTC 1 cut(s) 101
LmnI GCTCC 3 cut(s) 22, 277, 293
LpnPI CCDG 5 cut(s) 152, 165, 254, 263, 304
Lsp1109I GCAGC 1 cut(s) 173
MaeIII GTNAC 2 cut(s) 79, 233
MboII GAAGA 3 cut(s) 43, 88, 100
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 2 cut(s) 115, 131
MlyI GAGTC 2 cut(s) 120, 154
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 2 cut(s) 43, 285
MroXI GAANNNNTTC 2 cut(s) 95, 203
MseI TTAA 1 cut(s) 316
MslI CAYNNNNRTG 1 cut(s) 225
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 1 cut(s) 291
MwoI GCNNNNNNNGC 3 cut(s) 167, 193, 245
NlaIV GGNNCC 1 cut(s) 273
NmuCI GTSAC 2 cut(s) 79, 233
OliI CACNNNNGTG 1 cut(s) 225
PciSI GCTCTTC 1 cut(s) 101
PdmI GAANNNNTTC 2 cut(s) 95, 203
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 2 cut(s) 119, 153
PpsI GAGTC 2 cut(s) 119, 153
Psp124BI GAGCTC 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 273
PspPI GGNCC 2 cut(s) 136, 247
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 1 cut(s) 225
SacI GAGCTC 1 cut(s) 27
SapI GCTCTTC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 316
SatI GCNGC 1 cut(s) 162
Sau96I GGNCC 2 cut(s) 136, 247
SchI GAGTC 2 cut(s) 120, 154
SduI GDGCHC 1 cut(s) 27
SetI ASST 6 cut(s) 27, 96, 156, 177, 270, 298
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 2 cut(s) 115, 131
SsiI CCGC 1 cut(s) 187
SstI GAGCTC 1 cut(s) 27
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 3 cut(s) 68, 85, 193
TasI AATT 2 cut(s) 115, 131
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TscAI CASTG 1 cut(s) 171
TseFI GTSAC 2 cut(s) 79, 233
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 2 cut(s) 79, 233
TspDTI ATGAA 1 cut(s) 196
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 136
XagI CCTNNNNNAGG 1 cut(s) 254
XmnI GAANNNNTTC 2 cut(s) 95, 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.