Rh2AG636100

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0006282
Physical Location & Seq
Reverse (-)
86113155 .. 86114677
1523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG636100.1

Sequence Viewer

Length: 279 bp
ATGGCATTGCCCAAGGCAAAGGAGCTCGTTTCCTCCAACTCCGTCATCGTCTTCAGCAAGTCGTATTGTCCCTTCTGCGTGACGGTGAAGAAGCTCTTCTCTGAAATGGGAGCCAATTTCAAGGCCATTGAATTGGACCAAGAGAGTGATGGAAGTCAGCTACAAGCAGCACTGGCTGAGCTGACTGGACAGCGGACTGTGCCGAATGTGTTCATCGGTGGAAACCATATCGGTGGATGTGACGGTAAGACTACAATCCCTAAACCACCCTGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

92

Amino Acids

9.78

Weight (kDa)

6.54

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 15 - 77 5.8e-21 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 193
AcuI CTGAAG 1 cut(s) 37
AdeI CACNNNGTG 1 cut(s) 272
AgsI TTSAA 2 cut(s) 121, 131
AluBI AGCT 4 cut(s) 25, 94, 160, 181
AluI AGCT 4 cut(s) 25, 94, 160, 181
Alw21I GWGCWC 1 cut(s) 27
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 167
Asp700I GAANNNNTTC 2 cut(s) 95, 209
AspS9I GGNCC 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 97
AvaII GGWCC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 27
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
BbsI GAAGAC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 179
BccI CCATC 1 cut(s) 143
BisI GCNGC 1 cut(s) 168
BlpI GCTNAGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 169
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 112
BpiI GAAGAC 1 cut(s) 43
Bpu1102I GCTNAGC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 12
Bse1I ACTGG 2 cut(s) 177, 190
Bse3DI GCAATG 1 cut(s) 5
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 242
BseMI GCAATG 1 cut(s) 5
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 2 cut(s) 177, 190
BseXI GCAGC 1 cut(s) 179
BshFI GGCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 27
BslFI GGGAC 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 54
BsnI GGCC 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 27
Bsp1720I GCTNAGC 1 cut(s) 177
BspACI CCGC 1 cut(s) 193
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 112
BspQI GCTCTTC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 5
BsrI ACTGG 2 cut(s) 177, 190
BssECI CCNNGG 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 12
Bst4CI ACNGT 3 cut(s) 85, 199, 245
Bst6I CTCTTC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 242
BstMWI GCNNNNNNNGC 2 cut(s) 173, 199
BstV1I GCAGC 1 cut(s) 179
BstV2I GAAGAC 1 cut(s) 43
BstXI CCANNNNNNTGG 2 cut(s) 133, 233
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 136
CviJI RGCY 7 cut(s) 25, 94, 113, 125, 160, 176, 181
CviKI_1 RGCY 7 cut(s) 25, 94, 113, 125, 160, 176, 181
DdeI CTNAG 1 cut(s) 177
DraIII CACNNNGTG 1 cut(s) 272
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Ecl136II GAGCTC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 136
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 12
FaiI YATR 1 cut(s) 228
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 1 cut(s) 249
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 125
HphI GGTGA 1 cut(s) 97
Hpy188I TCNGA 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 3 cut(s) 85, 199, 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 199
HpyF3I CTNAG 1 cut(s) 177
LguI GCTCTTC 1 cut(s) 101
LmnI GCTCC 2 cut(s) 22, 110
LpnPI CCDG 2 cut(s) 158, 171
Lsp1109I GCAGC 1 cut(s) 179
MaeIII GTNAC 2 cut(s) 79, 239
MboII GAAGA 3 cut(s) 43, 88, 100
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 2 cut(s) 115, 131
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 1 cut(s) 43
MroXI GAANNNNTTC 2 cut(s) 95, 209
MslI CAYNNNNRTG 1 cut(s) 231
MspA1I CMGCKG 1 cut(s) 193
MwoI GCNNNNNNNGC 2 cut(s) 173, 199
NlaIV GGNNCC 1 cut(s) 112
NmuCI GTSAC 2 cut(s) 79, 239
PciSI GCTCTTC 1 cut(s) 101
PdmI GAANNNNTTC 2 cut(s) 95, 209
PkrI GCNGC 1 cut(s) 169
Psp124BI GAGCTC 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 231
SacI GAGCTC 1 cut(s) 27
SapI GCTCTTC 1 cut(s) 101
SatI GCNGC 1 cut(s) 168
Sau96I GGNCC 1 cut(s) 136
SduI GDGCHC 1 cut(s) 27
SetI ASST 4 cut(s) 27, 96, 162, 183
SgeI CNNG 9 cut(s) 25, 38, 70, 91, 133, 152, 176, 185, 198
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 231
Sse9I AATT 2 cut(s) 115, 131
SsiI CCGC 1 cut(s) 193
SstI GAGCTC 1 cut(s) 27
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 3 cut(s) 85, 199, 245
TasI AATT 2 cut(s) 115, 131
TscAI CASTG 1 cut(s) 177
TseFI GTSAC 2 cut(s) 79, 239
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 2 cut(s) 79, 239
TspDTI ATGAA 1 cut(s) 202
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 136
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XmnI GAANNNNTTC 2 cut(s) 95, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.