RchiOBHm_Chr5g0013221

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0006282
Physical Location & Seq
Reverse (-)
8971694 .. 8972898
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29376

Sequence Viewer

Length: 339 bp
ATGGCGTTGGGCAAGGTGAAGGAGCTCGTCTCGTCCAATCCGGTAGTCATCTTCAGCAACAAGCTTTGTCCCTACTGCGTGTGCGTGAAGCAGCTCTTCGTTCTAAAATTGGAAGTCCAGTACAAGGCCATTGAATTGGACCAAGAGAGTGATGGTAGTGAGATACAATCGGCGCTTGCTGAGTGGACTGGACAGCATACTCTGCCCAATGTTTTCGTTGGCGGAAACCACATTGGTGATTGTGACACAACCTGGGATCTGCACAAGGAAGGAAAACTGGTCCCTCTGCTTACCGGAGCTGGAGTTGTTGCCAAATTACAGGAGTTGGAAATAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

112

Amino Acids

12.22

Weight (kDa)

5.04

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 15 - 78 6.8e-15 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 222
AclWI GGATC 1 cut(s) 264
AcuI CTGAAG 1 cut(s) 37
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 1 cut(s) 134
AjnI CCWGG 1 cut(s) 251
AleI CACNNNNGTG 1 cut(s) 234
AluBI AGCT 5 cut(s) 25, 64, 94, 299, 336
AluI AGCT 5 cut(s) 25, 64, 94, 299, 336
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 1 cut(s) 264
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 91
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 2 cut(s) 139, 280
AsuHPI GGTGA 2 cut(s) 28, 248
AvaII GGWCC 2 cut(s) 139, 280
BanII GRGCYC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 103
BccI CCATC 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 1 cut(s) 337
BfoI RGCGCY 1 cut(s) 176
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 253
Bme18I GGWCC 2 cut(s) 139, 280
BmgT120I GGNCC 2 cut(s) 139, 280
BmiI GGNNCC 1 cut(s) 282
BmrFI CCNGG 1 cut(s) 253
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BpmI CTGGAG 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 252
BsaWI WCCGGW 2 cut(s) 40, 293
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 3 cut(s) 118, 193, 282
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 252
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 3 cut(s) 118, 193, 282
BseXI GCAGC 1 cut(s) 103
BsgI GTGCAG 1 cut(s) 245
BshFI GGCC 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 2 cut(s) 41, 294
BslFI GGGAC 2 cut(s) 54, 266
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 34
BsmBI CGTCTC 1 cut(s) 34
BsmFI GGGAC 2 cut(s) 54, 266
BsnI GGCC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 1 cut(s) 222
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 282
BspPI GGATC 1 cut(s) 264
BspQI GCTCTTC 1 cut(s) 101
BsrI ACTGG 3 cut(s) 118, 193, 282
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 1 cut(s) 256
Bst2UI CCWGG 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 180
BstH2I RGCGCY 1 cut(s) 176
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstNI CCWGG 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 256
BstXI CCANNNNNNTGG 1 cut(s) 136
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 177
CfoI GCGC 1 cut(s) 175
Cfr13I GGNCC 2 cut(s) 139, 280
Csp6I GTAC 1 cut(s) 121
CviJI RGCY 6 cut(s) 25, 64, 94, 128, 299, 336
CviKI_1 RGCY 6 cut(s) 25, 64, 94, 128, 299, 336
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
EciI GGCGGA 1 cut(s) 237
Ecl136II GAGCTC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 2 cut(s) 139, 280
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 34
FaiI YATR 1 cut(s) 198
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 2 cut(s) 54, 266
Fnu4HI GCNGC 1 cut(s) 92
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 92
FspBI CTAG 1 cut(s) 337
GlaI GCGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 92
GsuI CTGGAG 1 cut(s) 321
HaeII RGCGCY 1 cut(s) 176
HaeIII GGCC 1 cut(s) 128
HapII CCGG 2 cut(s) 41, 294
HhaI GCGC 1 cut(s) 175
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HindIII AAGCTT 1 cut(s) 62
HpaII CCGG 2 cut(s) 41, 294
HphI GGTGA 2 cut(s) 28, 248
Hpy166II GTNNAC 1 cut(s) 186
Hpy8I GTNNAC 1 cut(s) 186
HpyAV CCTTC 2 cut(s) 13, 263
HpyCH4V TGCA 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 1 cut(s) 180
HspAI GCGC 1 cut(s) 173
Kzo9I GATC 1 cut(s) 256
LguI GCTCTTC 1 cut(s) 101
LmnI GCTCC 2 cut(s) 22, 296
LpnPI CCDG 9 cut(s) 54, 131, 174, 238, 263, 265, 285, 305, 307
Lsp1109I GCAGC 1 cut(s) 103
MaeI CTAG 1 cut(s) 337
MaeIII GTNAC 1 cut(s) 242
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 2 cut(s) 43, 88
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 3 cut(s) 107, 134, 314
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 234
MspI CCGG 2 cut(s) 41, 294
MspR9I CCNGG 1 cut(s) 253
MvaI CCWGG 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 202
NdeII GATC 1 cut(s) 256
NlaIV GGNNCC 1 cut(s) 282
NmuCI GTSAC 1 cut(s) 242
OliI CACNNNNGTG 1 cut(s) 234
PciSI GCTCTTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 93
Psp124BI GAGCTC 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 251
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 282
PspPI GGNCC 2 cut(s) 139, 280
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 234
SacI GAGCTC 1 cut(s) 27
SapI GCTCTTC 1 cut(s) 101
SatI GCNGC 1 cut(s) 92
Sau3AI GATC 1 cut(s) 256
Sau96I GGNCC 2 cut(s) 139, 280
ScrFI CCNGG 1 cut(s) 253
SduI GDGCHC 1 cut(s) 27
SetI ASST 7 cut(s) 18, 27, 66, 96, 254, 301, 338
SinI GGWCC 2 cut(s) 139, 280
SmiMI CAYNNNNRTG 1 cut(s) 234
Sse9I AATT 3 cut(s) 107, 134, 314
SsiI CCGC 1 cut(s) 222
SspMI CTAG 1 cut(s) 337
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 251
TasI AATT 3 cut(s) 107, 134, 314
TatI WGTACW 1 cut(s) 120
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 242
VpaK11BI GGWCC 2 cut(s) 139, 280
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XspI CTAG 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.