RLG00000021673

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006282
Physical Location & Seq
Reverse (-)
77148224 .. 77150725
2502 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021673

Sequence Viewer

Length: 516 bp
ATGTCACGAACACGGTGGTTAGGTAGTCACCGGAATCATGATGACGACTATCTTAACGTCTTTTACTTTCCCTACTTGTCATCCACGTCAGCCCTTACCTCGAATCTTTGGAGTTTGGACCGATCTTCCTTTGTGGCTTTCCCTACGCACACACACCTATACATATATAAGGGGCTCCAGTCTTCTTCTTATTCTTCAAGACAGCGAGTTTCGTCGTATTGTCCCTACTGCGTGACGGTGAAGAAGCTCTTCTCTCAAATGGGAGCCAATTTCAAGGCCATTGAATTGGACCAAGAGAGTGATGGAAGTCAGCTACAAGCAGCGCTGGCTGAGTTGACAGGACAGCGGACTGTGCCGAATGTGTTCATCGGTGGAAACCATATCGATGGAAACCATATCGGTGGATGTTTGCAACTACGGCCCTGCACAAGGAAGGAAAGCTGGCCCCTCTGCTCACTCAAGCCGGAGCTGTTGCCAAATCCTCTGCTTAAAAGGAGTTTGGACATAGTAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

172

Amino Acids

19.33

Weight (kDa)

8.61

Isoelectric Point (pI)

63.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 72 - 128 1.7e-17 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 346
AfeI AGCGCT 1 cut(s) 324
AfiI CCNNNNNNNGG 1 cut(s) 429
AgsI TTSAA 3 cut(s) 198, 274, 284
AjiI CACGTC 1 cut(s) 87
AluBI AGCT 4 cut(s) 247, 313, 441, 469
AluI AGCT 4 cut(s) 247, 313, 441, 469
Aor51HI AGCGCT 1 cut(s) 324
AoxI GGCC 3 cut(s) 276, 419, 443
ApeKI GCWGC 1 cut(s) 320
Asp700I GAANNNNTTC 2 cut(s) 248, 362
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 4 cut(s) 118, 289, 420, 444
AsuHPI GGTGA 2 cut(s) 20, 250
AvaII GGWCC 2 cut(s) 118, 289
BanII GRGCYC 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 332
BccI CCATC 2 cut(s) 296, 380
BceAI ACGGC 1 cut(s) 434
BfoI RGCGCY 1 cut(s) 326
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme18I GGWCC 2 cut(s) 118, 289
BmgBI CACGTC 1 cut(s) 87
BmgT120I GGNCC 4 cut(s) 118, 289, 420, 444
BmiI GGNNCC 3 cut(s) 176, 265, 446
BpiI GAAGAC 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 443
Bsa29I ATCGAT 1 cut(s) 384
BsaWI WCCGGW 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 429
Bse1I ACTGG 1 cut(s) 178
BseCI ATCGAT 1 cut(s) 384
BseGI GGATG 2 cut(s) 80, 410
BseLI CCNNNNNNNGG 1 cut(s) 429
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 1 cut(s) 178
BseXI GCAGC 1 cut(s) 332
BsgI GTGCAG 1 cut(s) 409
BshFI GGCC 3 cut(s) 278, 421, 445
BshVI ATCGAT 1 cut(s) 384
BsiSI CCGG 2 cut(s) 31, 464
BslFI GGGAC 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 429
BsmFI GGGAC 1 cut(s) 207
BsnI GGCC 3 cut(s) 278, 421, 445
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 1 cut(s) 122
BspACI CCGC 1 cut(s) 346
BspANI GGCC 3 cut(s) 278, 421, 445
BspCNI CTCAG 1 cut(s) 322
BspDI ATCGAT 1 cut(s) 384
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 3 cut(s) 176, 265, 446
BspQI GCTCTTC 1 cut(s) 254
BsrI ACTGG 1 cut(s) 178
BssMI GATC 1 cut(s) 122
Bst4CI ACNGT 3 cut(s) 15, 238, 352
Bst6I CTCTTC 1 cut(s) 254
BstC8I GCNNGC 2 cut(s) 327, 443
BstDEI CTNAG 1 cut(s) 330
BstENI CCTNNNNNAGG 1 cut(s) 427
BstF5I GGATG 2 cut(s) 80, 410
BstH2I RGCGCY 1 cut(s) 326
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 1 cut(s) 125
BstMBI GATC 1 cut(s) 122
BstMWI GCNNNNNNNGC 3 cut(s) 326, 352, 418
BstV1I GCAGC 1 cut(s) 332
BstV2I GAAGAC 1 cut(s) 174
BstXI CCANNNNNNTGG 3 cut(s) 286, 386, 401
Bsu15I ATCGAT 1 cut(s) 384
BsuRI GGCC 3 cut(s) 278, 421, 445
BsuTUI ATCGAT 1 cut(s) 384
BtrI CACGTC 1 cut(s) 87
BtsCI GGATG 2 cut(s) 80, 410
Cac8I GCNNGC 2 cut(s) 327, 443
CciI TCATGA 1 cut(s) 37
CfoI GCGC 1 cut(s) 325
Cfr13I GGNCC 4 cut(s) 118, 289, 420, 444
ClaI ATCGAT 1 cut(s) 384
CviAII CATG 1 cut(s) 38
DdeI CTNAG 1 cut(s) 330
DpnI GATC 1 cut(s) 124
DpnII GATC 1 cut(s) 122
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Eco24I GRGCYC 1 cut(s) 177
Eco47I GGWCC 2 cut(s) 118, 289
Eco47III AGCGCT 1 cut(s) 324
EcoNI CCTNNNNNAGG 1 cut(s) 427
EcoT38I GRGCYC 1 cut(s) 177
FaeI CATG 1 cut(s) 41
FaiI YATR 8 cut(s) 39, 160, 164, 166, 168, 381, 396, 506
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FaqI GGGAC 1 cut(s) 207
FatI CATG 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 2 cut(s) 67, 417
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 321
GlaI GCGC 1 cut(s) 324
GluI GCNGC 1 cut(s) 321
GsuI CTGGAG 1 cut(s) 161
HaeII RGCGCY 1 cut(s) 326
HaeIII GGCC 3 cut(s) 278, 421, 445
HapII CCGG 2 cut(s) 31, 464
HhaI GCGC 1 cut(s) 325
Hin1II CATG 1 cut(s) 41
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
HinfI GANTC 2 cut(s) 34, 103
HpaII CCGG 2 cut(s) 31, 464
HphI GGTGA 2 cut(s) 20, 250
Hpy166II GTNNAC 1 cut(s) 336
Hpy188III TCNNGA 3 cut(s) 6, 38, 198
Hpy8I GTNNAC 1 cut(s) 336
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 427
HpyCH4III ACNGT 3 cut(s) 15, 238, 352
HpyCH4IV ACGT 2 cut(s) 57, 86
HpyCH4V TGCA 2 cut(s) 412, 426
HpyF10VI GCNNNNNNNGC 3 cut(s) 326, 352, 418
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 2 cut(s) 57, 86
Hsp92II CATG 1 cut(s) 41
HspAI GCGC 1 cut(s) 323
Kzo9I GATC 1 cut(s) 122
LguI GCTCTTC 1 cut(s) 254
LmnI GCTCC 3 cut(s) 180, 263, 466
LpnPI CCDG 7 cut(s) 44, 191, 311, 324, 427, 436, 477
Lsp1109I GCAGC 1 cut(s) 332
MaeII ACGT 2 cut(s) 57, 86
MaeIII GTNAC 3 cut(s) 3, 26, 232
MalI GATC 1 cut(s) 124
MboI GATC 1 cut(s) 122
MboII GAAGA 6 cut(s) 117, 174, 177, 186, 241, 253
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 2 cut(s) 268, 284
MnlI CCTC 3 cut(s) 109, 458, 492
MroXI GAANNNNTTC 2 cut(s) 248, 362
MseI TTAA 2 cut(s) 54, 489
MslI CAYNNNNRTG 2 cut(s) 384, 399
MspA1I CMGCKG 1 cut(s) 346
MspI CCGG 2 cut(s) 31, 464
MwoI GCNNNNNNNGC 3 cut(s) 326, 352, 418
NdeII GATC 1 cut(s) 122
NlaIII CATG 1 cut(s) 41
NlaIV GGNNCC 3 cut(s) 176, 265, 446
NmuCI GTSAC 3 cut(s) 3, 26, 232
PagI TCATGA 1 cut(s) 37
PciSI GCTCTTC 1 cut(s) 254
PdmI GAANNNNTTC 2 cut(s) 248, 362
PfeI GAWTC 2 cut(s) 34, 103
PkrI GCNGC 1 cut(s) 322
PspN4I GGNNCC 3 cut(s) 176, 265, 446
PspPI GGNCC 4 cut(s) 118, 289, 420, 444
RseI CAYNNNNRTG 2 cut(s) 384, 399
SapI GCTCTTC 1 cut(s) 254
SaqAI TTAA 2 cut(s) 54, 489
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 1 cut(s) 122
Sau96I GGNCC 4 cut(s) 118, 289, 420, 444
SduI GDGCHC 1 cut(s) 177
SetI ASST 9 cut(s) 25, 60, 89, 101, 159, 249, 315, 443, 471
SinI GGWCC 2 cut(s) 118, 289
SmiMI CAYNNNNRTG 2 cut(s) 384, 399
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 2 cut(s) 268, 284
SsiI CCGC 1 cut(s) 346
TaaI ACNGT 3 cut(s) 15, 238, 352
TaiI ACGT 2 cut(s) 60, 89
TaqI TCGA 2 cut(s) 101, 384
TaqII GACCGA 1 cut(s) 135
TasI AATT 2 cut(s) 268, 284
TfiI GAWTC 2 cut(s) 34, 103
Tru1I TTAA 2 cut(s) 54, 489
Tru9I TTAA 2 cut(s) 54, 489
TseFI GTSAC 3 cut(s) 3, 26, 232
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 3 cut(s) 3, 26, 232
TspDTI ATGAA 1 cut(s) 355
VpaK11BI GGWCC 2 cut(s) 118, 289
XagI CCTNNNNNAGG 1 cut(s) 427
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XmnI GAANNNNTTC 2 cut(s) 248, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.