AT5G47090

Coiled-coil domain containing protein (DUF2052)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006653
Physical Location & Seq
Forward (+)
19127187 .. 19129605
2419 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47090.1

Sequence Viewer

Length: 933 bp
ATGGAAGAGAAGAAGAAGACGATGGAGATGGAAGCAACAACAATGAAAGGCACGGCGGCGGAAGATATAACGGAGAGACTCTCTTCTCTCGACAATCTCTATTTTCCACGCGCCGTCCAATTAACCGCTGCATCTTCCGACCAACGCAAATCCATCCTCCTCGACCTCCTCCGTCGTGATCCCGCCGTTTTTCTAGAGAGATATGGATCGGAGCTACTAGTAGATGAATTGCTTGAGTTTGATGCTATGAAACATGACTACGAGGTTGATTGGCATTTGAAAAACCTGCGGAAGAAGATAAGTCCGACTTCAGAAGAGATTAAATCGAGGTCTGTAGCTGTGAGGAATAGGAGATTGGCTTATTTGAATAAGCTTGTATCCGAGGGACAGTATTTCTCAGAGGATGCTATGAGAGATAGAGAGCCGTATCTACATCATGAGTATGTTGGGAAGTTTCAGGATGTGATGGGAAGGAACATGGCTAGGCCTGGAGAACGTTGGTCTGAGACTTTGATGAGACGGGCTGAGGAAGCGGTGTTGGTTACTCGTATTAGAGAGGAGCAGCAGAGGTTAGGTGTTTCAGAGAGTGATTGGGTTGGTAATGAGAAGATGGAGGAATCAGAAGAAGAGGAAGAGGAGGAATCAGAAGAGGAGGAAGAAGAAGAAGATGAAGAAGCGAAGAATCCTACAGAAGCTAGCTCTTCAAGTCTGAATGGTAAAGAACAGAAAGAGAAGGCAACAACAGTCTTACCGCCAGAGGAGATGCAAGATATGATGGATCAGTTCACATCAATCATGGAACAGAAGTTCTTATCGGGAGAAGATCATCAACATTTGGATTACGCAAAGATAGACAATGACGAGACTCTTGATGATCATTGGCTTCGAGAGATTGGCCGTGACGCTGAAGATAAGTACTTTGATGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2052

Protein Analysis

310

Amino Acids

36.4

Weight (kDa)

4.56

Isoelectric Point (pI)

64.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCD97-like_C PF09747 116 - 310 4.1e-55 Coiled-coil domain containing protein 97-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 294
AccII CGCG 1 cut(s) 111
AciI CCGC 7 cut(s) 56, 59, 126, 183, 289, 533, 752
AclI AACGTT 1 cut(s) 496
AclWI GGATC 3 cut(s) 173, 214, 786
AcoI YGGCCR 1 cut(s) 895
AcuI CTGAAG 2 cut(s) 294, 927
AfaI GTAC 1 cut(s) 917
AgsI TTSAA 3 cut(s) 280, 367, 705
AhlI ACTAGT 1 cut(s) 217
AjnI CCWGG 1 cut(s) 487
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AloI GAACNNNNNNTCC 2 cut(s) 791, 823
AluBI AGCT 5 cut(s) 214, 338, 373, 695, 699
AluI AGCT 5 cut(s) 214, 338, 373, 695, 699
Alw26I GTCTC 4 cut(s) 70, 500, 511, 857
AlwI GGATC 3 cut(s) 173, 214, 786
AoxI GGCC 2 cut(s) 485, 895
ApeKI GCWGC 2 cut(s) 128, 562
AspLEI GCGC 1 cut(s) 113
AsuNHI GCTAGC 1 cut(s) 695
BbsI GAAGAC 1 cut(s) 23
BbvCI CCTCAGC 1 cut(s) 525
BbvI GCAGC 2 cut(s) 115, 574
BccI CCATC 6 cut(s) 16, 22, 161, 460, 604, 769
BceAI ACGGC 5 cut(s) 69, 98, 170, 409, 882
BciT130I CCWGG 1 cut(s) 489
BciVI GTATCC 1 cut(s) 388
BclI TGATCA 1 cut(s) 874
BcoDI GTCTC 4 cut(s) 70, 500, 511, 857
BcuI ACTAGT 1 cut(s) 217
BfaI CTAG 4 cut(s) 194, 218, 483, 696
BfmI CTRYAG 2 cut(s) 333, 687
BfuAI ACCTGC 1 cut(s) 294
BfuI GTATCC 1 cut(s) 388
BisI GCNGC 3 cut(s) 57, 129, 563
BlsI GCNGC 3 cut(s) 58, 130, 564
BmcAI AGTACT 1 cut(s) 917
Bme1390I CCNGG 1 cut(s) 489
BmrFI CCNGG 1 cut(s) 489
BmsI GCATC 4 cut(s) 140, 232, 394, 753
BmtI GCTAGC 1 cut(s) 699
BpiI GAAGAC 1 cut(s) 23
BplI GAGNNNNNCTC 2 cut(s) 65, 97
BpmI CTGGAG 1 cut(s) 510
Bpu10I CCTNAGC 1 cut(s) 525
BpuEI CTTGAG 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 381
Bse8I GATNNNNATC 1 cut(s) 205
BseBI CCWGG 1 cut(s) 489
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 3 cut(s) 153, 409, 466
BseJI GATNNNNATC 1 cut(s) 205
BseMII CTCAG 3 cut(s) 411, 495, 516
BseRI GAGGAG 6 cut(s) 149, 158, 572, 650, 665, 773
BseXI GCAGC 2 cut(s) 115, 574
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 2 cut(s) 487, 897
BslFI GGGAC 1 cut(s) 399
BsmAI GTCTC 4 cut(s) 70, 500, 511, 857
BsmBI CGTCTC 1 cut(s) 511
BsmFI GGGAC 1 cut(s) 399
BsnI GGCC 2 cut(s) 487, 897
Bsp143I GATC 5 cut(s) 178, 206, 778, 823, 874
BspACI CCGC 7 cut(s) 56, 59, 126, 183, 289, 533, 752
BspANI GGCC 2 cut(s) 487, 897
BspCNI CTCAG 3 cut(s) 410, 496, 517
BspFNI CGCG 1 cut(s) 111
BspHI TCATGA 1 cut(s) 436
BspMI ACCTGC 1 cut(s) 294
BspOI GCTAGC 1 cut(s) 699
BspPI GGATC 3 cut(s) 173, 214, 786
BspQI GCTCTTC 1 cut(s) 706
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 5 cut(s) 178, 206, 778, 823, 874
Bst2UI CCWGG 1 cut(s) 489
Bst4CI ACNGT 2 cut(s) 390, 745
Bst6I CTCTTC 6 cut(s) 88, 309, 621, 627, 642, 706
BstC8I GCNNGC 1 cut(s) 697
BstDEI CTNAG 3 cut(s) 397, 504, 525
BstF5I GGATG 3 cut(s) 153, 409, 466
BstFNI CGCG 1 cut(s) 111
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 5 cut(s) 181, 209, 781, 826, 877
BstMAI GTCTC 4 cut(s) 70, 500, 511, 857
BstMBI GATC 5 cut(s) 178, 206, 778, 823, 874
BstMWI GCNNNNNNNGC 1 cut(s) 530
BstNI CCWGG 1 cut(s) 489
BstSCI CCNGG 1 cut(s) 487
BstSFI CTRYAG 2 cut(s) 333, 687
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 2 cut(s) 115, 574
BstV2I GAAGAC 1 cut(s) 23
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 2 cut(s) 487, 897
BtsCI GGATG 3 cut(s) 153, 409, 466
BveI ACCTGC 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 697
CciI TCATGA 1 cut(s) 436
CfoI GCGC 1 cut(s) 113
CseI GACGC 1 cut(s) 911
Csp6I GTAC 1 cut(s) 916
CviAII CATG 4 cut(s) 254, 437, 478, 796
CviQI GTAC 1 cut(s) 916
DdeI CTNAG 3 cut(s) 397, 504, 525
DpnI GATC 5 cut(s) 180, 208, 780, 825, 876
DpnII GATC 5 cut(s) 178, 206, 778, 823, 874
EaeI YGGCCR 1 cut(s) 895
Eam1104I CTCTTC 6 cut(s) 88, 309, 621, 627, 642, 706
EarI CTCTTC 6 cut(s) 88, 309, 621, 627, 642, 706
EciI GGCGGA 1 cut(s) 74
Eco147I AGGCCT 1 cut(s) 487
Eco57I CTGAAG 2 cut(s) 294, 927
EcoRII CCWGG 1 cut(s) 487
Esp3I CGTCTC 1 cut(s) 511
FaeI CATG 4 cut(s) 257, 440, 481, 799
FalI AAGNNNNNCTT 2 cut(s) 292, 324
FaqI GGGAC 1 cut(s) 399
FatI CATG 4 cut(s) 253, 436, 477, 795
FauI CCCGC 1 cut(s) 190
FbaI TGATCA 1 cut(s) 874
Fnu4HI GCNGC 3 cut(s) 57, 129, 563
FokI GGATG 3 cut(s) 140, 416, 473
Fsp4HI GCNGC 3 cut(s) 57, 129, 563
FspBI CTAG 4 cut(s) 194, 218, 483, 696
GlaI GCGC 1 cut(s) 112
GluI GCNGC 3 cut(s) 57, 129, 563
GsuI CTGGAG 1 cut(s) 510
HaeIII GGCC 2 cut(s) 487, 897
HgaI GACGC 1 cut(s) 911
HhaI GCGC 1 cut(s) 113
Hin1II CATG 4 cut(s) 257, 440, 481, 799
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 5 cut(s) 78, 617, 641, 682, 865
Hpy166II GTNNAC 1 cut(s) 786
Hpy188III TCNNGA 8 cut(s) 89, 176, 194, 437, 458, 816, 869, 887
Hpy8I GTNNAC 1 cut(s) 786
Hpy99I CGWCG 1 cut(s) 177
HpyAV CCTTC 2 cut(s) 465, 727
HpyCH4III ACNGT 2 cut(s) 390, 745
HpyCH4IV ACGT 1 cut(s) 496
HpyCH4V TGCA 2 cut(s) 131, 766
HpyF10VI GCNNNNNNNGC 1 cut(s) 530
HpyF3I CTNAG 3 cut(s) 397, 504, 525
HpySE526I ACGT 1 cut(s) 496
Hsp92II CATG 4 cut(s) 257, 440, 481, 799
HspAI GCGC 1 cut(s) 111
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 5 cut(s) 178, 206, 778, 823, 874
LguI GCTCTTC 1 cut(s) 706
LmnI GCTCC 2 cut(s) 211, 559
LpnPI CCDG 5 cut(s) 299, 443, 474, 501, 768
Lsp1109I GCAGC 2 cut(s) 115, 574
LweI GCATC 4 cut(s) 140, 232, 394, 753
MaeI CTAG 4 cut(s) 194, 218, 483, 696
MaeII ACGT 1 cut(s) 496
MaeIII GTNAC 2 cut(s) 541, 899
MalI GATC 5 cut(s) 180, 208, 780, 825, 876
MboI GATC 5 cut(s) 178, 206, 778, 823, 874
MluCI AATT 2 cut(s) 119, 227
MlyI GAGTC 2 cut(s) 72, 859
MmeI TCCRAC 2 cut(s) 162, 329
MseI TTAA 2 cut(s) 122, 321
MslI CAYNNNNRTG 1 cut(s) 441
MspA1I CMGCKG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 489
MvaI CCWGG 1 cut(s) 489
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 530
NdeII GATC 5 cut(s) 178, 206, 778, 823, 874
NheI GCTAGC 1 cut(s) 695
NlaIII CATG 4 cut(s) 257, 440, 481, 799
NmuCI GTSAC 1 cut(s) 899
PagI TCATGA 1 cut(s) 436
PceI AGGCCT 1 cut(s) 487
PciSI GCTCTTC 1 cut(s) 706
PfeI GAWTC 3 cut(s) 617, 641, 682
PkrI GCNGC 3 cut(s) 58, 130, 564
PleI GAGTC 2 cut(s) 72, 859
PpsI GAGTC 2 cut(s) 72, 859
Psp1406I AACGTT 1 cut(s) 496
Psp6I CCWGG 1 cut(s) 487
PspGI CCWGG 1 cut(s) 487
RsaI GTAC 1 cut(s) 917
RsaNI GTAC 1 cut(s) 916
RseI CAYNNNNRTG 1 cut(s) 441
SapI GCTCTTC 1 cut(s) 706
SaqAI TTAA 2 cut(s) 122, 321
SatI GCNGC 3 cut(s) 57, 129, 563
Sau3AI GATC 5 cut(s) 178, 206, 778, 823, 874
ScaI AGTACT 1 cut(s) 917
SchI GAGTC 2 cut(s) 72, 859
ScrFI CCNGG 1 cut(s) 489
SfaNI GCATC 4 cut(s) 140, 232, 394, 753
SfcI CTRYAG 2 cut(s) 333, 687
SmiMI CAYNNNNRTG 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SpeI ACTAGT 1 cut(s) 217
Sse9I AATT 2 cut(s) 119, 227
SseBI AGGCCT 1 cut(s) 487
SsiI CCGC 7 cut(s) 56, 59, 126, 183, 289, 533, 752
SspMI CTAG 4 cut(s) 194, 218, 483, 696
StuI AGGCCT 1 cut(s) 487
StyD4I CCNGG 1 cut(s) 487
TaaI ACNGT 2 cut(s) 390, 745
TaiI ACGT 1 cut(s) 499
TaqI TCGA 4 cut(s) 90, 162, 326, 886
TasI AATT 2 cut(s) 119, 227
TatI WGTACW 1 cut(s) 915
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 3 cut(s) 617, 641, 682
Tru1I TTAA 2 cut(s) 122, 321
Tru9I TTAA 2 cut(s) 122, 321
TseFI GTSAC 1 cut(s) 899
TseI GCWGC 2 cut(s) 128, 562
Tsp45I GTSAC 1 cut(s) 899
TspDTI ATGAA 4 cut(s) 59, 240, 263, 684
TspGWI ACGGA 2 cut(s) 86, 161
XbaI TCTAGA 1 cut(s) 193
XspI CTAG 4 cut(s) 194, 218, 483, 696
ZrmI AGTACT 1 cut(s) 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.