Rh3BG038900

Coiled-coil domain containing protein (DUF2052)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0006653
Physical Location & Seq
Reverse (-)
2523180 .. 2528065
4886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG038900.1

Sequence Viewer

Length: 402 bp
ATGAAACAAGGTGCCAATAAGGGAGACGTTCTAAGTGAAGAACAGATTGCAGAGTTTCAGGAAGCGTTCTGTCTGTTTGACAAGGATGGAGATGAACGTTATGGATCGAAATTAACATCTAAGGAGTTCCTGGAGTTTGATGCACTGATAGATGACCATGAAGTCAGCTGGCATGTGAAGCATCTTAGAAGTTTATTGAGTCCGACATCGGATGAATTGAAATCAAGGGCAATTCAAGTGAAGAACCGGAGGCGAGCCTACCTGAATAAGTTGATATTTGATGGGCAGTATTTCTCGGAGGATTCAATGAGGGAGGGAGAGCCTTACTTGCATCATGAGTATGTGGGGAAGTTTCAGGTTCTGAGTTGTAGGAGCATGGCAAGACCTGGGGAGCGGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2052

Protein Analysis

133

Amino Acids

15.59

Weight (kDa)

5.74

Isoelectric Point (pI)

54.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCD97-like_C PF09747 82 - 130 5.6e-15 Coiled-coil domain containing protein 97-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 11
AccBSI CCGCTC 1 cut(s) 394
AciI CCGC 1 cut(s) 394
AclI AACGTT 1 cut(s) 97
AclWI GGATC 1 cut(s) 112
AgsI TTSAA 3 cut(s) 220, 236, 306
AjnI CCWGG 2 cut(s) 129, 385
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 1 cut(s) 112
AlwNI CAGNNNCTG 1 cut(s) 361
BanI GGYRCC 1 cut(s) 11
BccI CCATC 2 cut(s) 80, 275
BciT130I CCWGG 2 cut(s) 131, 387
BcoDI GTCTC 1 cut(s) 18
Bme1390I CCNGG 2 cut(s) 131, 387
BmiI GGNNCC 1 cut(s) 13
BmrFI CCNGG 2 cut(s) 131, 387
BmsI GCATC 3 cut(s) 130, 190, 340
BpmI CTGGAG 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 386
BsaWI WCCGGW 1 cut(s) 246
BsaXI ACNNNNNCTCC 1 cut(s) 383
BseBI CCWGG 2 cut(s) 131, 387
BseDI CCNNGG 1 cut(s) 386
BseGI GGATG 2 cut(s) 91, 217
BseMII CTCAG 1 cut(s) 353
BshNI GGYRCC 1 cut(s) 11
BsiSI CCGG 1 cut(s) 247
BsmAI GTCTC 1 cut(s) 18
BsmBI CGTCTC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 104
BspACI CCGC 1 cut(s) 394
BspCNI CTCAG 1 cut(s) 354
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 13
BspPI GGATC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 11
BsrBI CCGCTC 1 cut(s) 394
BssECI CCNNGG 1 cut(s) 386
BssMI GATC 1 cut(s) 104
Bst2UI CCWGG 2 cut(s) 131, 387
BstC8I GCNNGC 2 cut(s) 170, 255
BstDEI CTNAG 4 cut(s) 32, 120, 185, 362
BstF5I GGATG 2 cut(s) 91, 217
BstKTI GATC 1 cut(s) 107
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 1 cut(s) 104
BstMWI GCNNNNNNNGC 2 cut(s) 178, 328
BstNI CCWGG 2 cut(s) 131, 387
BstNSI RCATGY 1 cut(s) 176
BstSCI CCNGG 2 cut(s) 129, 385
BtsCI GGATG 2 cut(s) 91, 217
BtsIMutI CAGTG 1 cut(s) 143
Cac8I GCNNGC 2 cut(s) 170, 255
CaiI CAGNNNCTG 1 cut(s) 361
CciI TCATGA 1 cut(s) 334
CviAII CATG 4 cut(s) 158, 173, 335, 376
CviJI RGCY 3 cut(s) 168, 257, 322
CviKI_1 RGCY 3 cut(s) 168, 257, 322
DdeI CTNAG 4 cut(s) 32, 120, 185, 362
DpnI GATC 1 cut(s) 106
DpnII GATC 1 cut(s) 104
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
EcoRII CCWGG 2 cut(s) 129, 385
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 4 cut(s) 161, 176, 338, 379
FaiI YATR 6 cut(s) 102, 159, 174, 336, 342, 377
FatI CATG 4 cut(s) 157, 172, 334, 375
FokI GGATG 2 cut(s) 98, 224
GsuI CTGGAG 1 cut(s) 152
HapII CCGG 1 cut(s) 247
Hin1II CATG 4 cut(s) 161, 176, 338, 379
HinfI GANTC 2 cut(s) 199, 302
HpaII CCGG 1 cut(s) 247
Hpy188I TCNGA 4 cut(s) 204, 211, 298, 363
Hpy188III TCNNGA 2 cut(s) 59, 335
HpyCH4IV ACGT 2 cut(s) 27, 97
HpyCH4V TGCA 3 cut(s) 50, 143, 331
HpyF10VI GCNNNNNNNGC 2 cut(s) 178, 328
HpyF3I CTNAG 4 cut(s) 32, 120, 185, 362
HpySE526I ACGT 2 cut(s) 27, 97
Hsp92II CATG 4 cut(s) 161, 176, 338, 379
Kzo9I GATC 1 cut(s) 104
LmnI GCTCC 2 cut(s) 372, 391
LpnPI CCDG 8 cut(s) 44, 116, 143, 154, 260, 275, 341, 372
LweI GCATC 3 cut(s) 130, 190, 340
MaeII ACGT 2 cut(s) 27, 97
MalI GATC 1 cut(s) 106
MbiI CCGCTC 1 cut(s) 394
MboI GATC 1 cut(s) 104
MboII GAAGA 2 cut(s) 50, 253
MluCI AATT 3 cut(s) 110, 215, 231
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 1 cut(s) 227
MnlI CCTC 4 cut(s) 243, 292, 303, 307
MseI TTAA 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 1 cut(s) 247
MspR9I CCNGG 2 cut(s) 131, 387
MvaI CCWGG 2 cut(s) 131, 387
MwoI GCNNNNNNNGC 2 cut(s) 178, 328
NdeII GATC 1 cut(s) 104
NlaIII CATG 4 cut(s) 161, 176, 338, 379
NlaIV GGNNCC 1 cut(s) 13
NspI RCATGY 1 cut(s) 176
PagI TCATGA 1 cut(s) 334
PfeI GAWTC 1 cut(s) 302
PfoI TCCNGGA 1 cut(s) 129
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
Psp1406I AACGTT 1 cut(s) 97
Psp6I CCWGG 2 cut(s) 129, 385
PspGI CCWGG 2 cut(s) 129, 385
PspN4I GGNNCC 1 cut(s) 13
PstNI CAGNNNCTG 1 cut(s) 361
PvuII CAGCTG 1 cut(s) 168
RseI CAYNNNNRTG 1 cut(s) 339
SaqAI TTAA 1 cut(s) 113
Sau3AI GATC 1 cut(s) 104
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 2 cut(s) 131, 387
SetI ASST 7 cut(s) 13, 30, 100, 170, 264, 360, 388
SfaNI GCATC 3 cut(s) 130, 190, 340
SmiMI CAYNNNNRTG 1 cut(s) 339
Sse9I AATT 3 cut(s) 110, 215, 231
SsiI CCGC 1 cut(s) 394
StyD4I CCNGG 2 cut(s) 129, 385
TaiI ACGT 2 cut(s) 30, 100
TaqI TCGA 1 cut(s) 107
TasI AATT 3 cut(s) 110, 215, 231
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TscAI CASTG 1 cut(s) 150
TspDTI ATGAA 4 cut(s) 17, 108, 174, 228
TspRI CASTG 1 cut(s) 150
XceI RCATGY 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.