Rh7AG229000

Coiled-coil domain containing protein (DUF2052)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006653
Physical Location & Seq
Forward (+)
21662740 .. 21664893
2154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG229000.1

Sequence Viewer

Length: 1116 bp
ATGGAGACGAAGGTAGTGAGAAGCGAAGCGATAGAGAGCATATCGGACAGGCTATCGGCGTCGGAGGACCTCTACTTCCCTCGCGCCCTGCAATCCACCACCATCACCCCCTCTCAGCGCAAGGCCATTCTCCTCGACCTCCTATCCCGCGACGCTGCCGTCTTCTTAGAACGTTATGGATCGAAATTAACATCTGAGGAGCTCCTGGAGTTTGATGCGCTGACAGATGACTATGAAGTCAGCTGGCATGTGAAGCATCTTAGAAGTTTATTGAGTCCGACATCAGATGAATTGAAATCAAGGGCAGTTCAAGTGAAGAACAGGAGGCGAGCCTACCTGAATAAGTTGATATTTGATGGGCAGTATTTCTCAGAGGATTCAATGAGGGAGAGAGAGCCCTACTTGCATCATGAGTATGTGGGGAAGTTTCAGGATCCGAGTGGTAGGAGCATGGCAAGACCCGGGGAGCGGTGGTCAGATACTTTGTTGAGGAGGTCAGAGGAAGCGATTTTGGTAGCAAAGATTAGAGGGGAGCAACAGAGGTTGGGTGTTGCTGAGAGTGATTGGGTTGGCGGTGAGAGAATCCAGGAAGTAGAGGAACAGGAGGAGGAAGAAGAAGAGGAGGATGAGGAACAGGAGGAGGAAGAAGAAGAGGAGGATGAGGAAGAGGAAGAGGAAGAAGAAGAGGAGGAGGAGGAGGAAGAATCTAACGAGGCTAATGGGGGCACACAATCATCAGAGATGCTGGTGGATCCTCCTAATGTGGCCAGTGGTGCTGAAACTGCAGACCATCCGGATGCACCCAATGTTGCTCAAGCAACCACAGCAGGGCAGAGTGAGCAAGCAACTGTATCTGCAGAAGAGTTGCAAGATCTGATGGACCAGTTCACCTACATCATGCATGAGAAATTTTTGTTAGGTGAAGATCACGAGTACTTAGATTACTCAAAGATAGACAACGACGAGACATTGGATGATCACTGGCAGAGAGAAGCCAACCATGACGCTGAAGAGAAGTACTTTGATGACATTATTGATGAGGACGAGACATTGGATGATCACCGGCAGAGAGAAGTGAACCATGACGCTGAAGAGAAGTACTTTGATGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2052

Protein Analysis

371

Amino Acids

43.12

Weight (kDa)

4.22

Isoelectric Point (pI)

77.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCD97-like_C PF09747 107 - 343 8.6e-50 Coiled-coil domain containing protein 97-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 158, 236
AccBSI CCGCTC 1 cut(s) 469
AccII CGCG 2 cut(s) 84, 150
AccIII TCCGGA 1 cut(s) 793
AciI CCGC 3 cut(s) 148, 469, 573
AclI AACGTT 1 cut(s) 172
AclWI GGATC 5 cut(s) 187, 428, 441, 746, 759
AcoI YGGCCR 1 cut(s) 765
AcsI RAATTY 1 cut(s) 908
AcuI CTGAAG 2 cut(s) 1029, 1110
AcyI GRCGYC 1 cut(s) 59
AfaI GTAC 3 cut(s) 935, 1019, 1100
AfiI CCNNNNNNNGG 2 cut(s) 468, 828
AgsI TTSAA 3 cut(s) 295, 311, 381
AjnI CCWGG 2 cut(s) 204, 585
AluBI AGCT 2 cut(s) 202, 243
AluI AGCT 2 cut(s) 202, 243
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 2 cut(s) 959, 1040
AlwI GGATC 5 cut(s) 187, 428, 441, 746, 759
Ama87I CYCGRG 1 cut(s) 461
Aor13HI TCCGGA 1 cut(s) 793
AoxI GGCC 2 cut(s) 123, 765
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 908
AspLEI GCGC 3 cut(s) 86, 120, 220
AspS9I GGNCC 2 cut(s) 67, 880
AsuC2I CCSGG 2 cut(s) 462, 463
AsuHPI GGTGA 5 cut(s) 97, 587, 880, 932, 1052
AvaI CYCGRG 1 cut(s) 461
AvaII GGWCC 2 cut(s) 67, 880
BaeGI GKGCMC 1 cut(s) 728
BalI TGGCCA 1 cut(s) 767
BamHI GGATCC 2 cut(s) 433, 751
BanII GRGCYC 2 cut(s) 204, 399
BauI CACGAG 1 cut(s) 929
BbsI GAAGAC 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 142
BccI CCATC 4 cut(s) 110, 350, 798, 871
BceAI ACGGC 1 cut(s) 143
BciT130I CCWGG 2 cut(s) 206, 587
BclI TGATCA 2 cut(s) 976, 1057
BcnI CCSGG 2 cut(s) 462, 463
BcoDI GTCTC 2 cut(s) 959, 1040
BfmI CTRYAG 2 cut(s) 783, 855
BglII AGATCT 1 cut(s) 871
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BmcAI AGTACT 3 cut(s) 935, 1019, 1100
Bme1390I CCNGG 4 cut(s) 206, 462, 463, 587
Bme18I GGWCC 2 cut(s) 67, 880
BmeT110I CYCGRG 1 cut(s) 461
BmgT120I GGNCC 2 cut(s) 67, 880
BmiI GGNNCC 2 cut(s) 435, 753
BmrFI CCNGG 4 cut(s) 206, 462, 463, 587
BmsI GCATC 5 cut(s) 205, 265, 415, 732, 787
BpiI GAAGAC 1 cut(s) 154
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 798
BpuMI CCSGG 2 cut(s) 462, 463
BsaHI GRCGYC 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 461, 462
BsaWI WCCGGW 1 cut(s) 793
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 2 cut(s) 468, 828
Bse118I RCCGGY 1 cut(s) 1062
Bse1I ACTGG 3 cut(s) 768, 883, 986
BseAI TCCGGA 1 cut(s) 793
BseBI CCWGG 2 cut(s) 206, 587
BseDI CCNNGG 2 cut(s) 461, 462
BseGI GGATG 6 cut(s) 631, 664, 790, 802, 979, 1060
BseLI CCNNNNNNNGG 2 cut(s) 468, 828
BseMII CTCAG 4 cut(s) 128, 186, 384, 546
BseNI ACTGG 3 cut(s) 768, 883, 986
BseSI GKGCMC 1 cut(s) 728
BseXI GCAGC 1 cut(s) 142
Bsh1236I CGCG 2 cut(s) 84, 150
BshFI GGCC 2 cut(s) 125, 767
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 3 cut(s) 462, 794, 1063
BslI CCNNNNNNNGG 2 cut(s) 468, 828
BsmAI GTCTC 2 cut(s) 959, 1040
BsnI GGCC 2 cut(s) 125, 767
BsoBI CYCGRG 1 cut(s) 461
Bsp1286I GDGCHC 3 cut(s) 204, 399, 728
Bsp13I TCCGGA 1 cut(s) 793
Bsp143I GATC 7 cut(s) 179, 433, 751, 871, 925, 976, 1057
BspACI CCGC 3 cut(s) 148, 469, 573
BspANI GGCC 2 cut(s) 125, 767
BspCNI CTCAG 4 cut(s) 127, 187, 383, 547
BspEI TCCGGA 1 cut(s) 793
BspFNI CGCG 2 cut(s) 84, 150
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 2 cut(s) 435, 753
BspMAI CTGCAG 2 cut(s) 787, 859
BspPI GGATC 5 cut(s) 187, 428, 441, 746, 759
BsrBI CCGCTC 1 cut(s) 469
BsrFI RCCGGY 1 cut(s) 1062
BsrI ACTGG 3 cut(s) 768, 883, 986
BssAI RCCGGY 1 cut(s) 1062
BssECI CCNNGG 2 cut(s) 461, 462
BssMI GATC 7 cut(s) 179, 433, 751, 871, 925, 976, 1057
BssNI GRCGYC 1 cut(s) 59
BssSI CACGAG 1 cut(s) 929
Bst2BI CACGAG 1 cut(s) 929
Bst2UI CCWGG 2 cut(s) 206, 587
Bst4CI ACNGT 1 cut(s) 850
Bst6I CTCTTC 8 cut(s) 612, 645, 660, 666, 678, 855, 1005, 1086
BstACI GRCGYC 1 cut(s) 59
BstC8I GCNNGC 3 cut(s) 245, 330, 843
BstDEI CTNAG 7 cut(s) 114, 166, 195, 260, 370, 555, 937
BstF5I GGATG 6 cut(s) 631, 664, 790, 802, 979, 1060
BstFNI CGCG 2 cut(s) 84, 150
BstHHI GCGC 3 cut(s) 86, 120, 220
BstKTI GATC 7 cut(s) 182, 436, 754, 874, 928, 979, 1060
BstMAI GTCTC 2 cut(s) 959, 1040
BstMBI GATC 7 cut(s) 179, 433, 751, 871, 925, 976, 1057
BstMWI GCNNNNNNNGC 6 cut(s) 253, 403, 773, 782, 824, 838
BstNI CCWGG 2 cut(s) 206, 587
BstNSI RCATGY 1 cut(s) 251
BstSCI CCNGG 4 cut(s) 204, 460, 461, 585
BstSFI CTRYAG 2 cut(s) 783, 855
BstSLI GKGCMC 1 cut(s) 728
BstUI CGCG 2 cut(s) 84, 150
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 154
BstX2I RGATCY 3 cut(s) 433, 751, 871
BstYI RGATCY 3 cut(s) 433, 751, 871
BsuRI GGCC 2 cut(s) 125, 767
BtsCI GGATG 6 cut(s) 631, 664, 790, 802, 979, 1060
BtsIMutI CAGTG 2 cut(s) 775, 979
Cac8I GCNNGC 3 cut(s) 245, 330, 843
CciI TCATGA 1 cut(s) 409
CfoI GCGC 3 cut(s) 86, 120, 220
Cfr10I RCCGGY 1 cut(s) 1062
Cfr13I GGNCC 2 cut(s) 67, 880
Cfr9I CCCGGG 1 cut(s) 461
CseI GACGC 4 cut(s) 48, 161, 1013, 1094
Csp6I GTAC 3 cut(s) 934, 1018, 1099
CviAII CATG 7 cut(s) 248, 410, 451, 898, 902, 1001, 1082
CviJI RGCY 9 cut(s) 52, 125, 202, 243, 332, 397, 716, 767, 995
CviKI_1 RGCY 9 cut(s) 52, 125, 202, 243, 332, 397, 716, 767, 995
CviQI GTAC 3 cut(s) 934, 1018, 1099
DdeI CTNAG 7 cut(s) 114, 166, 195, 260, 370, 555, 937
DpnI GATC 7 cut(s) 181, 435, 753, 873, 927, 978, 1059
DpnII GATC 7 cut(s) 179, 433, 751, 871, 925, 976, 1057
DrdI GACNNNNNNGTC 2 cut(s) 158, 236
DseDI GACNNNNNNGTC 2 cut(s) 158, 236
EaeI YGGCCR 1 cut(s) 765
Eam1104I CTCTTC 8 cut(s) 612, 645, 660, 666, 678, 855, 1005, 1086
EarI CTCTTC 8 cut(s) 612, 645, 660, 666, 678, 855, 1005, 1086
Ecl136II GAGCTC 1 cut(s) 202
Eco24I GRGCYC 2 cut(s) 204, 399
Eco47I GGWCC 2 cut(s) 67, 880
Eco53kI GAGCTC 1 cut(s) 202
Eco57I CTGAAG 2 cut(s) 1029, 1110
Eco88I CYCGRG 1 cut(s) 461
EcoICRI GAGCTC 1 cut(s) 202
EcoO109I RGGNCCY 1 cut(s) 67
EcoRII CCWGG 2 cut(s) 204, 585
EcoT22I ATGCAT 1 cut(s) 903
EcoT38I GRGCYC 2 cut(s) 204, 399
FaeI CATG 7 cut(s) 251, 413, 454, 901, 905, 1004, 1085
FatI CATG 7 cut(s) 247, 409, 450, 897, 901, 1000, 1081
FauI CCCGC 1 cut(s) 155
FbaI TGATCA 2 cut(s) 976, 1057
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 6 cut(s) 638, 671, 777, 809, 986, 1067
FriOI GRGCYC 2 cut(s) 204, 399
Fsp4HI GCNGC 1 cut(s) 156
GlaI GCGC 3 cut(s) 85, 119, 219
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 2 cut(s) 125, 767
HapII CCGG 3 cut(s) 462, 794, 1063
HgaI GACGC 4 cut(s) 48, 161, 1013, 1094
HhaI GCGC 3 cut(s) 86, 120, 220
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 7 cut(s) 251, 413, 454, 901, 905, 1004, 1085
Hin6I GCGC 3 cut(s) 84, 118, 218
HinP1I GCGC 3 cut(s) 84, 118, 218
HinfI GANTC 4 cut(s) 274, 377, 582, 704
HpaII CCGG 3 cut(s) 462, 794, 1063
HphI GGTGA 5 cut(s) 97, 587, 880, 932, 1052
Hpy166II GTNNAC 2 cut(s) 888, 1078
Hpy188III TCNNGA 4 cut(s) 410, 431, 794, 929
Hpy8I GTNNAC 2 cut(s) 888, 1078
Hpy99I CGWCG 3 cut(s) 64, 155, 965
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 1 cut(s) 850
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 7 cut(s) 91, 406, 785, 800, 857, 868, 901
HpyF10VI GCNNNNNNNGC 6 cut(s) 253, 403, 773, 782, 824, 838
HpyF3I CTNAG 7 cut(s) 114, 166, 195, 260, 370, 555, 937
HpySE526I ACGT 1 cut(s) 172
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 7 cut(s) 251, 413, 454, 901, 905, 1004, 1085
HspAI GCGC 3 cut(s) 84, 118, 218
Kpn2I TCCGGA 1 cut(s) 793
Ksp22I TGATCA 2 cut(s) 976, 1057
Kzo9I GATC 7 cut(s) 179, 433, 751, 871, 925, 976, 1057
LmnI GCTCC 5 cut(s) 199, 207, 447, 466, 532
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 5 cut(s) 205, 265, 415, 732, 787
MaeII ACGT 1 cut(s) 172
MalI GATC 7 cut(s) 181, 435, 753, 873, 927, 978, 1059
MbiI CCGCTC 1 cut(s) 469
MboI GATC 7 cut(s) 179, 433, 751, 871, 925, 976, 1057
MflI RGATCY 3 cut(s) 433, 751, 871
MhlI GDGCHC 3 cut(s) 204, 399, 728
MlsI TGGCCA 1 cut(s) 767
MluCI AATT 3 cut(s) 185, 290, 908
MluNI TGGCCA 1 cut(s) 767
MlyI GAGTC 1 cut(s) 283
MmeI TCCRAC 2 cut(s) 42, 302
Mox20I TGGCCA 1 cut(s) 767
Mph1103I ATGCAT 1 cut(s) 903
MroI TCCGGA 1 cut(s) 793
MscI TGGCCA 1 cut(s) 767
MseI TTAA 2 cut(s) 188, 1114
MslI CAYNNNNRTG 2 cut(s) 414, 795
Msp20I TGGCCA 1 cut(s) 767
MspA1I CMGCKG 1 cut(s) 243
MspI CCGG 3 cut(s) 462, 794, 1063
MspR9I CCNGG 4 cut(s) 206, 462, 463, 587
MvaI CCWGG 2 cut(s) 206, 587
MvnI CGCG 2 cut(s) 84, 150
MwoI GCNNNNNNNGC 6 cut(s) 253, 403, 773, 782, 824, 838
NciI CCSGG 2 cut(s) 462, 463
NdeII GATC 7 cut(s) 179, 433, 751, 871, 925, 976, 1057
NlaIII CATG 7 cut(s) 251, 413, 454, 901, 905, 1004, 1085
NlaIV GGNNCC 2 cut(s) 435, 753
NsiI ATGCAT 1 cut(s) 903
NspI RCATGY 1 cut(s) 251
PagI TCATGA 1 cut(s) 409
PfeI GAWTC 3 cut(s) 377, 582, 704
PfoI TCCNGGA 2 cut(s) 204, 585
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
PpuMI RGGWCCY 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 204
Psp1406I AACGTT 1 cut(s) 172
Psp5II RGGWCCY 1 cut(s) 67
Psp6I CCWGG 2 cut(s) 204, 585
PspGI CCWGG 2 cut(s) 204, 585
PspN4I GGNNCC 2 cut(s) 435, 753
PspPI GGNCC 2 cut(s) 67, 880
PspPPI RGGWCCY 1 cut(s) 67
PstI CTGCAG 2 cut(s) 787, 859
PsuI RGATCY 3 cut(s) 433, 751, 871
PvuII CAGCTG 1 cut(s) 243
RsaI GTAC 3 cut(s) 935, 1019, 1100
RsaNI GTAC 3 cut(s) 934, 1018, 1099
RseI CAYNNNNRTG 2 cut(s) 414, 795
SacI GAGCTC 1 cut(s) 204
SaqAI TTAA 2 cut(s) 188, 1114
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 7 cut(s) 179, 433, 751, 871, 925, 976, 1057
Sau96I GGNCC 2 cut(s) 67, 880
ScaI AGTACT 3 cut(s) 935, 1019, 1100
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 4 cut(s) 206, 462, 463, 587
SduI GDGCHC 3 cut(s) 204, 399, 728
SfaNI GCATC 5 cut(s) 205, 265, 415, 732, 787
SfcI CTRYAG 2 cut(s) 783, 855
SinI GGWCC 2 cut(s) 67, 880
SmaI CCCGGG 1 cut(s) 463
SmiMI CAYNNNNRTG 2 cut(s) 414, 795
SmlI CTYRAG 1 cut(s) 813
SmoI CTYRAG 1 cut(s) 813
Sse9I AATT 3 cut(s) 185, 290, 908
SsiI CCGC 3 cut(s) 148, 469, 573
SstI GAGCTC 1 cut(s) 204
StyD4I CCNGG 4 cut(s) 204, 460, 461, 585
TaaI ACNGT 1 cut(s) 850
TaiI ACGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 135, 182
TasI AATT 3 cut(s) 185, 290, 908
TatI WGTACW 3 cut(s) 933, 1017, 1098
TfiI GAWTC 3 cut(s) 377, 582, 704
Tru1I TTAA 2 cut(s) 188, 1114
Tru9I TTAA 2 cut(s) 188, 1114
TscAI CASTG 2 cut(s) 775, 986
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 249, 303
TspMI CCCGGG 1 cut(s) 461
TspRI CASTG 2 cut(s) 775, 986
VpaK11BI GGWCC 2 cut(s) 67, 880
XapI RAATTY 1 cut(s) 908
XceI RCATGY 1 cut(s) 251
XmaI CCCGGG 1 cut(s) 461
ZrmI AGTACT 3 cut(s) 935, 1019, 1100
Zsp2I ATGCAT 1 cut(s) 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.