Rh1CG389800

Coiled-coil domain containing protein (DUF2052)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006653
Physical Location & Seq
Reverse (-)
65875917 .. 65881424
5508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG389800.1

Sequence Viewer

Length: 441 bp
ATGGGGTTTGGCTTTTACCACGTAAAGCAAATCCTCCAAATGCAGAAACAGCTTGGCTTCTGGTACCAGAAGACCAGAAGCTATACGCAAGTACAAAACAAGCTTTCACAAATCCTGCAAATCCACTTCAAAGAACGTTATGGATCAAAATTAACATCTGAGGAGCTCCTGGAGTTTGATGCGCTGACAGATGACTATGAAGTCAGCTGGCATGTGAAGCATCTTAGAAGTTTATTGAGTCCGACATCGGATGAATTGAAATCAAGGGCAGTTCAAGTGAAGAACCGGAGGCGAGCCTACCTGAATAAGTTGATATTTGATGGGCAGTATTTCTCGGAGGATTCAATGAGGGAGGAAGAGCACTACTTGCATCATGAGTATGTGGGGAAGTTTCAGGTTCCGAGTTGTAGGACCATGGCAAGACCTGGGGAGCGGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2052

Protein Analysis

146

Amino Acids

17.63

Weight (kDa)

9.14

Isoelectric Point (pI)

64.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCD97-like_C PF09747 95 - 143 1.1e-13 Coiled-coil domain containing protein 97-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
Acc65I GGTACC 1 cut(s) 63
AccB1I GGYRCC 1 cut(s) 63
AccBSI CCGCTC 1 cut(s) 433
AciI CCGC 1 cut(s) 433
AclI AACGTT 1 cut(s) 136
AclWI GGATC 1 cut(s) 151
AfaI GTAC 2 cut(s) 65, 93
AgsI TTSAA 4 cut(s) 130, 259, 275, 345
AjnI CCWGG 2 cut(s) 168, 424
AluBI AGCT 5 cut(s) 52, 81, 103, 166, 207
AluI AGCT 5 cut(s) 52, 81, 103, 166, 207
Alw21I GWGCWC 2 cut(s) 168, 363
AlwI GGATC 1 cut(s) 151
Asp718I GGTACC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 411
AvaII GGWCC 1 cut(s) 411
BanI GGYRCC 1 cut(s) 63
BanII GRGCYC 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 77
Bbv12I GWGCWC 2 cut(s) 168, 363
BccI CCATC 1 cut(s) 314
BciT130I CCWGG 2 cut(s) 170, 426
Bme1390I CCNGG 2 cut(s) 170, 426
Bme18I GGWCC 1 cut(s) 411
BmgT120I GGNCC 1 cut(s) 411
BmiI GGNNCC 2 cut(s) 65, 399
BmrFI CCNGG 2 cut(s) 170, 426
BmsI GCATC 3 cut(s) 169, 229, 379
BpiI GAAGAC 1 cut(s) 77
BpmI CTGGAG 1 cut(s) 191
BsaAI YACGTR 1 cut(s) 22
BsaJI CCNNGG 2 cut(s) 414, 425
BsaWI WCCGGW 1 cut(s) 285
BsaXI ACNNNNNCTCC 1 cut(s) 422
BseBI CCWGG 2 cut(s) 170, 426
BseDI CCNNGG 2 cut(s) 414, 425
BseGI GGATG 1 cut(s) 256
BseMII CTCAG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 176
BshNI GGYRCC 1 cut(s) 63
BsiHKAI GWGCWC 2 cut(s) 168, 363
BsiSI CCGG 1 cut(s) 286
Bsp1286I GDGCHC 2 cut(s) 168, 363
Bsp143I GATC 1 cut(s) 143
Bsp19I CCATGG 1 cut(s) 414
BspACI CCGC 1 cut(s) 433
BspCNI CTCAG 1 cut(s) 151
BspHI TCATGA 1 cut(s) 373
BspLI GGNNCC 2 cut(s) 65, 399
BspPI GGATC 1 cut(s) 151
BspQI GCTCTTC 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 63
BsrBI CCGCTC 1 cut(s) 433
BssECI CCNNGG 2 cut(s) 414, 425
BssMI GATC 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 414
Bst2UI CCWGG 2 cut(s) 170, 426
Bst6I CTCTTC 1 cut(s) 351
BstAPI GCANNNNNTGC 1 cut(s) 367
BstBAI YACGTR 1 cut(s) 22
BstC8I GCNNGC 2 cut(s) 209, 294
BstDEI CTNAG 2 cut(s) 159, 224
BstDSI CCRYGG 1 cut(s) 414
BstF5I GGATG 1 cut(s) 256
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 1 cut(s) 146
BstMBI GATC 1 cut(s) 143
BstMWI GCNNNNNNNGC 3 cut(s) 49, 217, 367
BstNI CCWGG 2 cut(s) 170, 426
BstNSI RCATGY 1 cut(s) 215
BstSCI CCNGG 2 cut(s) 168, 424
BstV2I GAAGAC 1 cut(s) 77
BtgI CCRYGG 1 cut(s) 414
BtsCI GGATG 1 cut(s) 256
Cac8I GCNNGC 2 cut(s) 209, 294
CciI TCATGA 1 cut(s) 373
CfoI GCGC 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 411
Csp6I GTAC 2 cut(s) 64, 92
CviAII CATG 3 cut(s) 212, 374, 415
CviJI RGCY 8 cut(s) 12, 52, 57, 81, 103, 166, 207, 296
CviKI_1 RGCY 8 cut(s) 12, 52, 57, 81, 103, 166, 207, 296
CviQI GTAC 2 cut(s) 64, 92
DdeI CTNAG 2 cut(s) 159, 224
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Ecl136II GAGCTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 414
Eco24I GRGCYC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 411
Eco53kI GAGCTC 1 cut(s) 166
EcoICRI GAGCTC 1 cut(s) 166
EcoRII CCWGG 2 cut(s) 168, 424
EcoT14I CCWWGG 1 cut(s) 414
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 3 cut(s) 215, 377, 418
FaiI YATR 7 cut(s) 84, 141, 198, 213, 375, 381, 416
FatI CATG 3 cut(s) 211, 373, 414
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 168
GlaI GCGC 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 191
HapII CCGG 1 cut(s) 286
HhaI GCGC 1 cut(s) 184
Hin1II CATG 3 cut(s) 215, 377, 418
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 2 cut(s) 238, 341
HpaII CCGG 1 cut(s) 286
Hpy188I TCNGA 5 cut(s) 160, 243, 250, 337, 402
Hpy188III TCNNGA 1 cut(s) 374
HpyCH4IV ACGT 2 cut(s) 21, 136
HpyCH4V TGCA 3 cut(s) 43, 118, 370
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 217, 367
HpyF3I CTNAG 2 cut(s) 159, 224
HpySE526I ACGT 2 cut(s) 21, 136
Hsp92II CATG 3 cut(s) 215, 377, 418
HspAI GCGC 1 cut(s) 182
KpnI GGTACC 1 cut(s) 67
Kzo9I GATC 1 cut(s) 143
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 3 cut(s) 163, 171, 430
LweI GCATC 3 cut(s) 169, 229, 379
MaeII ACGT 2 cut(s) 21, 136
MalI GATC 1 cut(s) 145
MbiI CCGCTC 1 cut(s) 433
MboI GATC 1 cut(s) 143
MboII GAAGA 3 cut(s) 82, 292, 368
MhlI GDGCHC 2 cut(s) 168, 363
MluCI AATT 2 cut(s) 149, 254
MlyI GAGTC 1 cut(s) 247
MmeI TCCRAC 1 cut(s) 266
MnlI CCTC 6 cut(s) 44, 154, 282, 331, 342, 346
MseI TTAA 1 cut(s) 152
MslI CAYNNNNRTG 1 cut(s) 378
MspA1I CMGCKG 1 cut(s) 207
MspI CCGG 1 cut(s) 286
MspR9I CCNGG 2 cut(s) 170, 426
MvaI CCWGG 2 cut(s) 170, 426
MwoI GCNNNNNNNGC 3 cut(s) 49, 217, 367
NcoI CCATGG 1 cut(s) 414
NdeII GATC 1 cut(s) 143
NlaIII CATG 3 cut(s) 215, 377, 418
NlaIV GGNNCC 2 cut(s) 65, 399
NspI RCATGY 1 cut(s) 215
PagI TCATGA 1 cut(s) 373
PciSI GCTCTTC 1 cut(s) 351
PfeI GAWTC 1 cut(s) 341
PfoI TCCNGGA 1 cut(s) 168
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
Ppu21I YACGTR 1 cut(s) 22
Psp124BI GAGCTC 1 cut(s) 168
Psp1406I AACGTT 1 cut(s) 136
Psp6I CCWGG 2 cut(s) 168, 424
PspGI CCWGG 2 cut(s) 168, 424
PspN4I GGNNCC 2 cut(s) 65, 399
PspPI GGNCC 1 cut(s) 411
PvuII CAGCTG 1 cut(s) 207
RsaI GTAC 2 cut(s) 65, 93
RsaNI GTAC 2 cut(s) 64, 92
RseI CAYNNNNRTG 1 cut(s) 378
SacI GAGCTC 1 cut(s) 168
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 152
Sau3AI GATC 1 cut(s) 143
Sau96I GGNCC 1 cut(s) 411
SchI GAGTC 1 cut(s) 247
ScrFI CCNGG 2 cut(s) 170, 426
SduI GDGCHC 2 cut(s) 168, 363
SfaNI GCATC 3 cut(s) 169, 229, 379
SinI GGWCC 1 cut(s) 411
SmiMI CAYNNNNRTG 1 cut(s) 378
Sse9I AATT 2 cut(s) 149, 254
SsiI CCGC 1 cut(s) 433
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 2 cut(s) 168, 424
StyI CCWWGG 1 cut(s) 414
TaiI ACGT 2 cut(s) 24, 139
TasI AATT 2 cut(s) 149, 254
TatI WGTACW 1 cut(s) 91
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 213, 267
VpaK11BI GGWCC 1 cut(s) 411
XceI RCATGY 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.