Rh7BG225500

Coiled-coil domain containing protein (DUF2052)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006653
Physical Location & Seq
Forward (+)
19434103 .. 19436508
2406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG225500.1

Sequence Viewer

Length: 1104 bp
ATGGAGACGAAGGTAGTGAGAAGCGAAGCGATAGAGAGCATATCGGACAGGCTATCGGCGTCGGAGGACCTCTACTTCCCTCGCGCCCTGCAATCCACCACCATCACCCCCTCTCAGCGCAAGGCCATTCTCCTCGACCTCCTCTCCCGCGACGCCGCCGTTTTCTTAGAACGTTATGGATCGAAATTAACATCTGAGGAGCTTCTGGAGTTTGATGCGCTGACAGATGACTATGAAGTCAGCTGGCATGTGAAGCATCTTAGAAGTTTATTGAGTCCGACATCGGATGAATTGAAGTCAAGGGCAGTTCAAGTGAAGAACCGGAGGCGAGCCTACCTGAATAAATTGATATTTGATGGGCAGTATTTCTCGGAGGATTCAATGAGGGAGAGAGAGCCCTACTTGCATCATGAGTATGTGGGGAAGTTTCAGGATCCGAGTGGTAGGAGCATGGCAAGACCCGGGGAGCGGTGGTCAGATACTTTGTTGAGGAGGTCAGAGGAAGCGATTTTGGTAGCAAAGATTAGAGGGGAGCAACAGAGGTTGGGTGTTGCTGAGAGTGATTGGGTTGGCGGTGAGAGAATCCAGGAAGTAGAGGAACAGGAGGAGGAAGAAGAAGAGGAGGAAGAGGAAGAGGAAGAAGAAGAGGAAGAAGAAGAGGAGGAGGAGGAGGAAGAATCTAACGAGGCTAATGGGGGCACACAATCATCAGAGATGCTGGTGGATCCTCCTAATGTGGCCAGTGGTGCTGAAACTGCAGACCATCCGGATGCGCCCAATGTTGCTCAAGCAACCACAGCAGCGCAGAGTGAGCAAGCAACTGTATCTGCAGAAGAGTTGCAAGATCTGATGGACCAGTTCACCTACATCATGCATGAGAAATTTTTGTTAGGAGAAGATCACGAGTACTTAGATTATTCAAAGATAGACAACGACGAGACATTGGATGATCACTGGCAGAGAGAAGCCAACCATGACGCTGAAGAGAAGTACTTTGATGACATTATTGATGAGGACGAGACATTGGATGATCACCAGCAGAGAGAAGTGAACCATGACGCTGAAGAGAATCACTTGGATTATGCAAAATGGAAGATACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2052

Protein Analysis

367

Amino Acids

42.55

Weight (kDa)

4.31

Isoelectric Point (pI)

73.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCD97-like_C PF09747 107 - 334 2.1e-53 Coiled-coil domain containing protein 97-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
AccBSI CCGCTC 1 cut(s) 469
AccII CGCG 2 cut(s) 84, 150
AccIII TCCGGA 1 cut(s) 766
AciI CCGC 4 cut(s) 148, 156, 469, 573
AclI AACGTT 1 cut(s) 172
AclWI GGATC 5 cut(s) 187, 428, 441, 719, 732
AcoI YGGCCR 1 cut(s) 738
AcsI RAATTY 1 cut(s) 881
AcuI CTGAAG 2 cut(s) 1002, 1083
AcyI GRCGYC 2 cut(s) 59, 153
AfaI GTAC 2 cut(s) 908, 992
AfiI CCNNNNNNNGG 1 cut(s) 468
AgsI TTSAA 4 cut(s) 295, 311, 381, 921
AjnI CCWGG 1 cut(s) 585
AluBI AGCT 2 cut(s) 202, 243
AluI AGCT 2 cut(s) 202, 243
Alw26I GTCTC 2 cut(s) 932, 1013
AlwI GGATC 5 cut(s) 187, 428, 441, 719, 732
Ama87I CYCGRG 1 cut(s) 461
Aor13HI TCCGGA 1 cut(s) 766
AoxI GGCC 2 cut(s) 123, 738
ApeKI GCWGC 1 cut(s) 800
ApoI RAATTY 1 cut(s) 881
AspLEI GCGC 5 cut(s) 86, 120, 220, 775, 805
AspS9I GGNCC 2 cut(s) 67, 853
AsuC2I CCSGG 2 cut(s) 462, 463
AsuHPI GGTGA 4 cut(s) 97, 587, 853, 1025
AvaI CYCGRG 1 cut(s) 461
AvaII GGWCC 2 cut(s) 67, 853
BaeGI GKGCMC 1 cut(s) 701
BalI TGGCCA 1 cut(s) 740
BamHI GGATCC 2 cut(s) 433, 724
BanII GRGCYC 1 cut(s) 399
BauI CACGAG 1 cut(s) 902
BbvI GCAGC 1 cut(s) 812
BccI CCATC 4 cut(s) 110, 350, 771, 844
BceAI ACGGC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 587
BclI TGATCA 2 cut(s) 949, 1030
BcnI CCSGG 2 cut(s) 462, 463
BcoDI GTCTC 2 cut(s) 932, 1013
BfmI CTRYAG 2 cut(s) 756, 828
BglII AGATCT 1 cut(s) 844
BisI GCNGC 2 cut(s) 156, 801
BlsI GCNGC 2 cut(s) 157, 802
BmcAI AGTACT 2 cut(s) 908, 992
Bme1390I CCNGG 3 cut(s) 462, 463, 587
Bme18I GGWCC 2 cut(s) 67, 853
BmeT110I CYCGRG 1 cut(s) 461
BmgT120I GGNCC 2 cut(s) 67, 853
BmiI GGNNCC 2 cut(s) 435, 726
BmrFI CCNGG 3 cut(s) 462, 463, 587
BmsI GCATC 5 cut(s) 205, 265, 415, 705, 760
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 771
BpuMI CCSGG 2 cut(s) 462, 463
BsaHI GRCGYC 2 cut(s) 59, 153
BsaJI CCNNGG 2 cut(s) 461, 462
BsaWI WCCGGW 2 cut(s) 321, 766
BsaXI ACNNNNNCTCC 4 cut(s) 128, 158, 458, 488
Bsc4I CCNNNNNNNGG 1 cut(s) 468
Bse1I ACTGG 3 cut(s) 741, 856, 959
BseAI TCCGGA 1 cut(s) 766
BseBI CCWGG 1 cut(s) 587
BseDI CCNNGG 2 cut(s) 461, 462
BseGI GGATG 5 cut(s) 292, 763, 775, 952, 1033
BseLI CCNNNNNNNGG 1 cut(s) 468
BseMII CTCAG 3 cut(s) 128, 186, 546
BseNI ACTGG 3 cut(s) 741, 856, 959
BseSI GKGCMC 1 cut(s) 701
BseXI GCAGC 1 cut(s) 812
Bsh1236I CGCG 2 cut(s) 84, 150
BshFI GGCC 2 cut(s) 125, 740
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 3 cut(s) 322, 462, 767
BslI CCNNNNNNNGG 1 cut(s) 468
BsmAI GTCTC 2 cut(s) 932, 1013
BsnI GGCC 2 cut(s) 125, 740
BsoBI CYCGRG 1 cut(s) 461
Bsp1286I GDGCHC 2 cut(s) 399, 701
Bsp13I TCCGGA 1 cut(s) 766
Bsp143I GATC 7 cut(s) 179, 433, 724, 844, 898, 949, 1030
BspACI CCGC 4 cut(s) 148, 156, 469, 573
BspANI GGCC 2 cut(s) 125, 740
BspCNI CTCAG 3 cut(s) 127, 187, 547
BspEI TCCGGA 1 cut(s) 766
BspFNI CGCG 2 cut(s) 84, 150
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 2 cut(s) 435, 726
BspMAI CTGCAG 2 cut(s) 760, 832
BspPI GGATC 5 cut(s) 187, 428, 441, 719, 732
BsrBI CCGCTC 1 cut(s) 469
BsrI ACTGG 3 cut(s) 741, 856, 959
BssECI CCNNGG 2 cut(s) 461, 462
BssMI GATC 7 cut(s) 179, 433, 724, 844, 898, 949, 1030
BssNI GRCGYC 2 cut(s) 59, 153
BssSI CACGAG 1 cut(s) 902
Bst2BI CACGAG 1 cut(s) 902
Bst2UI CCWGG 1 cut(s) 587
Bst4CI ACNGT 1 cut(s) 823
Bst6I CTCTTC 8 cut(s) 612, 621, 627, 639, 651, 828, 978, 1059
BstACI GRCGYC 2 cut(s) 59, 153
BstC8I GCNNGC 3 cut(s) 245, 330, 816
BstDEI CTNAG 6 cut(s) 114, 166, 195, 260, 555, 910
BstF5I GGATG 5 cut(s) 292, 763, 775, 952, 1033
BstFNI CGCG 2 cut(s) 84, 150
BstHHI GCGC 5 cut(s) 86, 120, 220, 775, 805
BstKTI GATC 7 cut(s) 182, 436, 727, 847, 901, 952, 1033
BstMAI GTCTC 2 cut(s) 932, 1013
BstMBI GATC 7 cut(s) 179, 433, 724, 844, 898, 949, 1030
BstMWI GCNNNNNNNGC 6 cut(s) 253, 403, 746, 755, 797, 811
BstNI CCWGG 1 cut(s) 587
BstNSI RCATGY 1 cut(s) 251
BstSCI CCNGG 3 cut(s) 460, 461, 585
BstSFI CTRYAG 2 cut(s) 756, 828
BstSLI GKGCMC 1 cut(s) 701
BstUI CGCG 2 cut(s) 84, 150
BstV1I GCAGC 1 cut(s) 812
BstX2I RGATCY 3 cut(s) 433, 724, 844
BstYI RGATCY 3 cut(s) 433, 724, 844
BsuRI GGCC 2 cut(s) 125, 740
BtsCI GGATG 5 cut(s) 292, 763, 775, 952, 1033
BtsIMutI CAGTG 2 cut(s) 748, 952
Cac8I GCNNGC 3 cut(s) 245, 330, 816
CciI TCATGA 1 cut(s) 409
CfoI GCGC 5 cut(s) 86, 120, 220, 775, 805
Cfr13I GGNCC 2 cut(s) 67, 853
Cfr9I CCCGGG 1 cut(s) 461
CseI GACGC 4 cut(s) 48, 161, 986, 1067
Csp6I GTAC 2 cut(s) 907, 991
CviAII CATG 7 cut(s) 248, 410, 451, 871, 875, 974, 1055
CviJI RGCY 9 cut(s) 52, 125, 202, 243, 332, 397, 689, 740, 968
CviKI_1 RGCY 9 cut(s) 52, 125, 202, 243, 332, 397, 689, 740, 968
CviQI GTAC 2 cut(s) 907, 991
DdeI CTNAG 6 cut(s) 114, 166, 195, 260, 555, 910
DpnI GATC 7 cut(s) 181, 435, 726, 846, 900, 951, 1032
DpnII GATC 7 cut(s) 179, 433, 724, 844, 898, 949, 1030
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
EaeI YGGCCR 1 cut(s) 738
Eam1104I CTCTTC 8 cut(s) 612, 621, 627, 639, 651, 828, 978, 1059
EarI CTCTTC 8 cut(s) 612, 621, 627, 639, 651, 828, 978, 1059
Eco24I GRGCYC 1 cut(s) 399
Eco47I GGWCC 2 cut(s) 67, 853
Eco57I CTGAAG 2 cut(s) 1002, 1083
Eco88I CYCGRG 1 cut(s) 461
EcoO109I RGGNCCY 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 585
EcoT22I ATGCAT 1 cut(s) 876
EcoT38I GRGCYC 1 cut(s) 399
FaeI CATG 7 cut(s) 251, 413, 454, 874, 878, 977, 1058
FatI CATG 7 cut(s) 247, 409, 450, 870, 874, 973, 1054
FauI CCCGC 1 cut(s) 155
FbaI TGATCA 2 cut(s) 949, 1030
Fnu4HI GCNGC 2 cut(s) 156, 801
FokI GGATG 5 cut(s) 299, 750, 782, 959, 1040
FriOI GRGCYC 1 cut(s) 399
Fsp4HI GCNGC 2 cut(s) 156, 801
GlaI GCGC 5 cut(s) 85, 119, 219, 774, 804
GluI GCNGC 2 cut(s) 156, 801
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 2 cut(s) 125, 740
HapII CCGG 3 cut(s) 322, 462, 767
HgaI GACGC 4 cut(s) 48, 161, 986, 1067
HhaI GCGC 5 cut(s) 86, 120, 220, 775, 805
Hin1I GRCGYC 2 cut(s) 59, 153
Hin1II CATG 7 cut(s) 251, 413, 454, 874, 878, 977, 1058
Hin6I GCGC 5 cut(s) 84, 118, 218, 773, 803
HinP1I GCGC 5 cut(s) 84, 118, 218, 773, 803
HinfI GANTC 5 cut(s) 274, 377, 582, 677, 1069
HpaII CCGG 3 cut(s) 322, 462, 767
HphI GGTGA 4 cut(s) 97, 587, 853, 1025
Hpy166II GTNNAC 2 cut(s) 861, 1051
Hpy188III TCNNGA 5 cut(s) 206, 410, 431, 767, 902
Hpy8I GTNNAC 2 cut(s) 861, 1051
Hpy99I CGWCG 3 cut(s) 64, 155, 938
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 1 cut(s) 823
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 7 cut(s) 91, 406, 758, 830, 841, 874, 1085
HpyF10VI GCNNNNNNNGC 6 cut(s) 253, 403, 746, 755, 797, 811
HpyF3I CTNAG 6 cut(s) 114, 166, 195, 260, 555, 910
HpySE526I ACGT 1 cut(s) 172
Hsp92I GRCGYC 2 cut(s) 59, 153
Hsp92II CATG 7 cut(s) 251, 413, 454, 874, 878, 977, 1058
HspAI GCGC 5 cut(s) 84, 118, 218, 773, 803
Kpn2I TCCGGA 1 cut(s) 766
Ksp22I TGATCA 2 cut(s) 949, 1030
Kzo9I GATC 7 cut(s) 179, 433, 724, 844, 898, 949, 1030
LmnI GCTCC 4 cut(s) 199, 447, 466, 532
Lsp1109I GCAGC 1 cut(s) 812
LweI GCATC 5 cut(s) 205, 265, 415, 705, 760
MaeII ACGT 1 cut(s) 172
MalI GATC 7 cut(s) 181, 435, 726, 846, 900, 951, 1032
MbiI CCGCTC 1 cut(s) 469
MboI GATC 7 cut(s) 179, 433, 724, 844, 898, 949, 1030
MflI RGATCY 3 cut(s) 433, 724, 844
MhlI GDGCHC 2 cut(s) 399, 701
MlsI TGGCCA 1 cut(s) 740
MluCI AATT 4 cut(s) 185, 290, 344, 881
MluNI TGGCCA 1 cut(s) 740
MlyI GAGTC 1 cut(s) 283
MmeI TCCRAC 2 cut(s) 42, 302
Mox20I TGGCCA 1 cut(s) 740
Mph1103I ATGCAT 1 cut(s) 876
MroI TCCGGA 1 cut(s) 766
MscI TGGCCA 1 cut(s) 740
MseI TTAA 2 cut(s) 188, 1102
MslI CAYNNNNRTG 2 cut(s) 414, 768
Msp20I TGGCCA 1 cut(s) 740
MspA1I CMGCKG 1 cut(s) 243
MspI CCGG 3 cut(s) 322, 462, 767
MspR9I CCNGG 3 cut(s) 462, 463, 587
MvaI CCWGG 1 cut(s) 587
MvnI CGCG 2 cut(s) 84, 150
MwoI GCNNNNNNNGC 6 cut(s) 253, 403, 746, 755, 797, 811
NciI CCSGG 2 cut(s) 462, 463
NdeII GATC 7 cut(s) 179, 433, 724, 844, 898, 949, 1030
NlaIII CATG 7 cut(s) 251, 413, 454, 874, 878, 977, 1058
NlaIV GGNNCC 2 cut(s) 435, 726
NsiI ATGCAT 1 cut(s) 876
NspI RCATGY 1 cut(s) 251
PagI TCATGA 1 cut(s) 409
PfeI GAWTC 4 cut(s) 377, 582, 677, 1069
PfoI TCCNGGA 1 cut(s) 585
PkrI GCNGC 2 cut(s) 157, 802
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
PpuMI RGGWCCY 1 cut(s) 67
Psp1406I AACGTT 1 cut(s) 172
Psp5II RGGWCCY 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 585
PspGI CCWGG 1 cut(s) 585
PspN4I GGNNCC 2 cut(s) 435, 726
PspPI GGNCC 2 cut(s) 67, 853
PspPPI RGGWCCY 1 cut(s) 67
PstI CTGCAG 2 cut(s) 760, 832
PsuI RGATCY 3 cut(s) 433, 724, 844
PvuII CAGCTG 1 cut(s) 243
RsaI GTAC 2 cut(s) 908, 992
RsaNI GTAC 2 cut(s) 907, 991
RseI CAYNNNNRTG 2 cut(s) 414, 768
SaqAI TTAA 2 cut(s) 188, 1102
SatI GCNGC 2 cut(s) 156, 801
Sau3AI GATC 7 cut(s) 179, 433, 724, 844, 898, 949, 1030
Sau96I GGNCC 2 cut(s) 67, 853
ScaI AGTACT 2 cut(s) 908, 992
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 3 cut(s) 462, 463, 587
SduI GDGCHC 2 cut(s) 399, 701
SfaNI GCATC 5 cut(s) 205, 265, 415, 705, 760
SfcI CTRYAG 2 cut(s) 756, 828
SinI GGWCC 2 cut(s) 67, 853
SmaI CCCGGG 1 cut(s) 463
SmiMI CAYNNNNRTG 2 cut(s) 414, 768
SmlI CTYRAG 1 cut(s) 786
SmoI CTYRAG 1 cut(s) 786
Sse9I AATT 4 cut(s) 185, 290, 344, 881
SsiI CCGC 4 cut(s) 148, 156, 469, 573
StyD4I CCNGG 3 cut(s) 460, 461, 585
TaaI ACNGT 1 cut(s) 823
TaiI ACGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 135, 182
TasI AATT 4 cut(s) 185, 290, 344, 881
TatI WGTACW 2 cut(s) 906, 990
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 4 cut(s) 377, 582, 677, 1069
Tru1I TTAA 2 cut(s) 188, 1102
Tru9I TTAA 2 cut(s) 188, 1102
TscAI CASTG 2 cut(s) 748, 959
TseI GCWGC 1 cut(s) 800
TspDTI ATGAA 2 cut(s) 249, 303
TspMI CCCGGG 1 cut(s) 461
TspRI CASTG 2 cut(s) 748, 959
VpaK11BI GGWCC 2 cut(s) 67, 853
XapI RAATTY 1 cut(s) 881
XceI RCATGY 1 cut(s) 251
XmaI CCCGGG 1 cut(s) 461
ZrmI AGTACT 2 cut(s) 908, 992
Zsp2I ATGCAT 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.