Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005065.1

Orthogroup ID

OG0006653

Physical Location & Seq

Genomic Coordinates Forward (+)

103584 .. 105711

Gene Structure 2128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005065.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

atggagacgaaggtagtgagaagcgaagcgatagagagcatatcggacaggctatcggcgtcggaggacctctacttccctcgcgccctgcaatccaccaccatcaccccctctcagcgcaaggccattctcctcgacctcctctcccgcgacgccgccgtcttcttagaacgttatggatcgaaattaacatctgaggagctcctggagtttgatgcgctgacagatgactatgaagtcagctggcatgtgaagcatcttagaagtttattgagtccgacatcggatgaattgaaatcaagggcagttcaagtgaagaacaggaggcgagcctacctgaataagttgatatttgatgggcagtatttctcggaggattcaatgagggagagagagccctacttgcatcatgagtatgtgggtaagtttcaggatccgagtggtaggagcatggcaagacccggggagcggtggtcagatactttgttgaggaggtcagaggaagcgattttggtagcaaagattagaggggagcaacagaggttgggtgttgctgagagtgattgggttggcggtgagagaatccaggaagtagaggaacaggaggaggaagaagaagaggaggaagaggaagaagaagaggaggaggaggaggaggaggaggaggagggggaagaatctaacgaggctaatgggggcacacaatcatcagagatgctggtggatcctccttttgtggccagtggtgctgaaactgcagaccatccggatgcacccaatgttgctcaagcaaccacagcagggcagagtgagcaagcaactgtatctgcagaagagttgcaagatctgatggaccagttcacctacatcatgcatgagaaatttttgttaggtgaagatcacgagtacttagattactcaaagatagacaacgacgagacattggatgatcactggcagagagaagccaaccatgacgctgaagagaagtactttgatgacattattgatgaggacgagacattggatgatcaccggcagagagaagtgaaccattacgctgaagagaagtactttgatgaggattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2052

Protein Analysis

362

Amino Acids

41.99

Weight (kDa)

4.3

Isoelectric Point (pI)

75.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47090 AT5G47090
fragaria_vesca	FvH4_5g20690 FvH4_5g20690
malus_domestica	MD04G1054200.v1.1
prunus_persica	Prupe.5G053300_v2.0.a1 Prupe.5G053300_v2.0.a1
pyrus_communis	pycom04g04730
rosa_chinensis	RchiOBHm_Chr7g0206421
rosa_laevigata	RLG00000003313
rosa_multiflora	Rmu_sc0003652.1_g000021 Rmu_sc0005065.1_g000026
rosa_roxburghii	Rroxscaffold_3G00251530
rosa_rugosa	Rorug07G0097400
rosa_samantha	Rh1AG232100 Rh1BG376000 Rh1CG216900 Rh1CG389800 Rh1DG406600 Rh3BG038900 Rh5AG411300 Rh7AG229000 Rh7BG225500 Rh7CG243600 Rh7DG236000
rosa_wichuraiana	Rw7G019710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	158, 236
AccBSI	CCGCTC	1 cut(s)	469
AccII	CGCG	2 cut(s)	84, 150
AccIII	TCCGGA	1 cut(s)	766
AciI	CCGC	4 cut(s)	148, 156, 469, 573
AclI	AACGTT	1 cut(s)	172
AclWI	GGATC	5 cut(s)	187, 428, 441, 719, 732
AcoI	YGGCCR	1 cut(s)	738
AcsI	RAATTY	1 cut(s)	881
AcuI	CTGAAG	2 cut(s)	1002, 1083
AcyI	GRCGYC	2 cut(s)	59, 153
AfaI	GTAC	3 cut(s)	908, 992, 1073
AfiI	CCNNNNNNNGG	2 cut(s)	468, 801
AgsI	TTSAA	3 cut(s)	295, 311, 381
AjnI	CCWGG	2 cut(s)	204, 585
AluBI	AGCT	2 cut(s)	202, 243
AluI	AGCT	2 cut(s)	202, 243
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	2 cut(s)	932, 1013
AlwI	GGATC	5 cut(s)	187, 428, 441, 719, 732
Ama87I	CYCGRG	1 cut(s)	461
Aor13HI	TCCGGA	1 cut(s)	766
AoxI	GGCC	2 cut(s)	123, 738
ApoI	RAATTY	1 cut(s)	881
AspLEI	GCGC	3 cut(s)	86, 120, 220
AspS9I	GGNCC	2 cut(s)	67, 853
AsuC2I	CCSGG	2 cut(s)	462, 463
AsuHPI	GGTGA	5 cut(s)	97, 587, 853, 905, 1025
AvaI	CYCGRG	1 cut(s)	461
AvaII	GGWCC	2 cut(s)	67, 853
BaeGI	GKGCMC	1 cut(s)	701
BalI	TGGCCA	1 cut(s)	740
BamHI	GGATCC	2 cut(s)	433, 724
BanII	GRGCYC	2 cut(s)	204, 399
BauI	CACGAG	1 cut(s)	902
BbsI	GAAGAC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	204
BccI	CCATC	4 cut(s)	110, 350, 771, 844
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	2 cut(s)	206, 587
BclI	TGATCA	2 cut(s)	949, 1030
BcnI	CCSGG	2 cut(s)	462, 463
BcoDI	GTCTC	2 cut(s)	932, 1013
BfmI	CTRYAG	2 cut(s)	756, 828
BglII	AGATCT	1 cut(s)	844
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
BmcAI	AGTACT	3 cut(s)	908, 992, 1073
Bme1390I	CCNGG	4 cut(s)	206, 462, 463, 587
Bme18I	GGWCC	2 cut(s)	67, 853
BmeT110I	CYCGRG	1 cut(s)	461
BmgT120I	GGNCC	2 cut(s)	67, 853
BmiI	GGNNCC	2 cut(s)	435, 726
BmrFI	CCNGG	4 cut(s)	206, 462, 463, 587
BmsI	GCATC	5 cut(s)	205, 265, 415, 705, 760
BpiI	GAAGAC	1 cut(s)	154
BpmI	CTGGAG	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	771
BpuMI	CCSGG	2 cut(s)	462, 463
BsaHI	GRCGYC	2 cut(s)	59, 153
BsaJI	CCNNGG	2 cut(s)	461, 462
BsaWI	WCCGGW	1 cut(s)	766
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 158, 458, 488
Bsc4I	CCNNNNNNNGG	2 cut(s)	468, 801
Bse118I	RCCGGY	1 cut(s)	1035
Bse1I	ACTGG	3 cut(s)	741, 856, 959
BseAI	TCCGGA	1 cut(s)	766
BseBI	CCWGG	2 cut(s)	206, 587
BseDI	CCNNGG	2 cut(s)	461, 462
BseGI	GGATG	5 cut(s)	292, 763, 775, 952, 1033
BseLI	CCNNNNNNNGG	2 cut(s)	468, 801
BseMII	CTCAG	3 cut(s)	128, 186, 546
BseNI	ACTGG	3 cut(s)	741, 856, 959
BseSI	GKGCMC	1 cut(s)	701
Bsh1236I	CGCG	2 cut(s)	84, 150
BshFI	GGCC	2 cut(s)	125, 740
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	3 cut(s)	462, 767, 1036
BslI	CCNNNNNNNGG	2 cut(s)	468, 801
BsmAI	GTCTC	2 cut(s)	932, 1013
BsnI	GGCC	2 cut(s)	125, 740
BsoBI	CYCGRG	1 cut(s)	461
Bsp1286I	GDGCHC	3 cut(s)	204, 399, 701
Bsp13I	TCCGGA	1 cut(s)	766
Bsp143I	GATC	7 cut(s)	179, 433, 724, 844, 898, 949, 1030
BspACI	CCGC	4 cut(s)	148, 156, 469, 573
BspANI	GGCC	2 cut(s)	125, 740
BspCNI	CTCAG	3 cut(s)	127, 187, 547
BspEI	TCCGGA	1 cut(s)	766
BspFNI	CGCG	2 cut(s)	84, 150
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	435, 726
BspMAI	CTGCAG	2 cut(s)	760, 832
BspPI	GGATC	5 cut(s)	187, 428, 441, 719, 732
BsrBI	CCGCTC	1 cut(s)	469
BsrFI	RCCGGY	1 cut(s)	1035
BsrI	ACTGG	3 cut(s)	741, 856, 959
BssAI	RCCGGY	1 cut(s)	1035
BssECI	CCNNGG	2 cut(s)	461, 462
BssMI	GATC	7 cut(s)	179, 433, 724, 844, 898, 949, 1030
BssNI	GRCGYC	2 cut(s)	59, 153
BssSI	CACGAG	1 cut(s)	902
Bst2BI	CACGAG	1 cut(s)	902
Bst2UI	CCWGG	2 cut(s)	206, 587
Bst4CI	ACNGT	1 cut(s)	823
Bst6I	CTCTTC	6 cut(s)	612, 621, 633, 828, 978, 1059
BstACI	GRCGYC	2 cut(s)	59, 153
BstC8I	GCNNGC	3 cut(s)	245, 330, 816
BstDEI	CTNAG	6 cut(s)	114, 166, 195, 260, 555, 910
BstF5I	GGATG	5 cut(s)	292, 763, 775, 952, 1033
BstFNI	CGCG	2 cut(s)	84, 150
BstHHI	GCGC	3 cut(s)	86, 120, 220
BstKTI	GATC	7 cut(s)	182, 436, 727, 847, 901, 952, 1033
BstMAI	GTCTC	2 cut(s)	932, 1013
BstMBI	GATC	7 cut(s)	179, 433, 724, 844, 898, 949, 1030
BstMWI	GCNNNNNNNGC	6 cut(s)	253, 403, 746, 755, 797, 811
BstNI	CCWGG	2 cut(s)	206, 587
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	4 cut(s)	204, 460, 461, 585
BstSFI	CTRYAG	2 cut(s)	756, 828
BstSLI	GKGCMC	1 cut(s)	701
BstUI	CGCG	2 cut(s)	84, 150
BstV2I	GAAGAC	1 cut(s)	154
BstX2I	RGATCY	3 cut(s)	433, 724, 844
BstYI	RGATCY	3 cut(s)	433, 724, 844
BsuRI	GGCC	2 cut(s)	125, 740
BtsCI	GGATG	5 cut(s)	292, 763, 775, 952, 1033
BtsIMutI	CAGTG	2 cut(s)	748, 952
Cac8I	GCNNGC	3 cut(s)	245, 330, 816
CciI	TCATGA	1 cut(s)	409
CfoI	GCGC	3 cut(s)	86, 120, 220
Cfr10I	RCCGGY	1 cut(s)	1035
Cfr13I	GGNCC	2 cut(s)	67, 853
Cfr9I	CCCGGG	1 cut(s)	461
CseI	GACGC	3 cut(s)	48, 161, 986
Csp6I	GTAC	3 cut(s)	907, 991, 1072
CviAII	CATG	6 cut(s)	248, 410, 451, 871, 875, 974
CviJI	RGCY	9 cut(s)	52, 125, 202, 243, 332, 397, 689, 740, 968
CviKI_1	RGCY	9 cut(s)	52, 125, 202, 243, 332, 397, 689, 740, 968
CviQI	GTAC	3 cut(s)	907, 991, 1072
DdeI	CTNAG	6 cut(s)	114, 166, 195, 260, 555, 910
DpnI	GATC	7 cut(s)	181, 435, 726, 846, 900, 951, 1032
DpnII	GATC	7 cut(s)	179, 433, 724, 844, 898, 949, 1030
DrdI	GACNNNNNNGTC	2 cut(s)	158, 236
DseDI	GACNNNNNNGTC	2 cut(s)	158, 236
EaeI	YGGCCR	1 cut(s)	738
Eam1104I	CTCTTC	6 cut(s)	612, 621, 633, 828, 978, 1059
EarI	CTCTTC	6 cut(s)	612, 621, 633, 828, 978, 1059
Ecl136II	GAGCTC	1 cut(s)	202
Eco24I	GRGCYC	2 cut(s)	204, 399
Eco47I	GGWCC	2 cut(s)	67, 853
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	2 cut(s)	1002, 1083
Eco88I	CYCGRG	1 cut(s)	461
EcoICRI	GAGCTC	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	2 cut(s)	204, 585
EcoT22I	ATGCAT	1 cut(s)	876
EcoT38I	GRGCYC	2 cut(s)	204, 399
FaeI	CATG	6 cut(s)	251, 413, 454, 874, 878, 977
FatI	CATG	6 cut(s)	247, 409, 450, 870, 874, 973
FauI	CCCGC	1 cut(s)	155
FbaI	TGATCA	2 cut(s)	949, 1030
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	5 cut(s)	299, 750, 782, 959, 1040
FriOI	GRGCYC	2 cut(s)	204, 399
Fsp4HI	GCNGC	1 cut(s)	156
GlaI	GCGC	3 cut(s)	85, 119, 219
GluI	GCNGC	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	125, 740
HapII	CCGG	3 cut(s)	462, 767, 1036
HgaI	GACGC	3 cut(s)	48, 161, 986
HhaI	GCGC	3 cut(s)	86, 120, 220
Hin1I	GRCGYC	2 cut(s)	59, 153
Hin1II	CATG	6 cut(s)	251, 413, 454, 874, 878, 977
Hin6I	GCGC	3 cut(s)	84, 118, 218
HinP1I	GCGC	3 cut(s)	84, 118, 218
HinfI	GANTC	4 cut(s)	274, 377, 582, 677
HpaII	CCGG	3 cut(s)	462, 767, 1036
HphI	GGTGA	5 cut(s)	97, 587, 853, 905, 1025
Hpy166II	GTNNAC	2 cut(s)	861, 1051
Hpy188III	TCNNGA	4 cut(s)	410, 431, 767, 902
Hpy8I	GTNNAC	2 cut(s)	861, 1051
Hpy99I	CGWCG	3 cut(s)	64, 155, 938
HpyAV	CCTTC	1 cut(s)	4
HpyCH4III	ACNGT	1 cut(s)	823
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	7 cut(s)	91, 406, 758, 773, 830, 841, 874
HpyF10VI	GCNNNNNNNGC	6 cut(s)	253, 403, 746, 755, 797, 811
HpyF3I	CTNAG	6 cut(s)	114, 166, 195, 260, 555, 910
HpySE526I	ACGT	1 cut(s)	172
Hsp92I	GRCGYC	2 cut(s)	59, 153
Hsp92II	CATG	6 cut(s)	251, 413, 454, 874, 878, 977
HspAI	GCGC	3 cut(s)	84, 118, 218
Kpn2I	TCCGGA	1 cut(s)	766
Ksp22I	TGATCA	2 cut(s)	949, 1030
Kzo9I	GATC	7 cut(s)	179, 433, 724, 844, 898, 949, 1030
LmnI	GCTCC	5 cut(s)	199, 207, 447, 466, 532
LweI	GCATC	5 cut(s)	205, 265, 415, 705, 760
MaeII	ACGT	1 cut(s)	172
MalI	GATC	7 cut(s)	181, 435, 726, 846, 900, 951, 1032
MbiI	CCGCTC	1 cut(s)	469
MboI	GATC	7 cut(s)	179, 433, 724, 844, 898, 949, 1030
MflI	RGATCY	3 cut(s)	433, 724, 844
MhlI	GDGCHC	3 cut(s)	204, 399, 701
MlsI	TGGCCA	1 cut(s)	740
MluCI	AATT	3 cut(s)	185, 290, 881
MluNI	TGGCCA	1 cut(s)	740
MlyI	GAGTC	1 cut(s)	283
MmeI	TCCRAC	2 cut(s)	42, 302
Mox20I	TGGCCA	1 cut(s)	740
Mph1103I	ATGCAT	1 cut(s)	876
MroI	TCCGGA	1 cut(s)	766
MscI	TGGCCA	1 cut(s)	740
MseI	TTAA	2 cut(s)	188, 1087
MslI	CAYNNNNRTG	2 cut(s)	414, 768
Msp20I	TGGCCA	1 cut(s)	740
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	3 cut(s)	462, 767, 1036
MspR9I	CCNGG	4 cut(s)	206, 462, 463, 587
MvaI	CCWGG	2 cut(s)	206, 587
MvnI	CGCG	2 cut(s)	84, 150
MwoI	GCNNNNNNNGC	6 cut(s)	253, 403, 746, 755, 797, 811
NciI	CCSGG	2 cut(s)	462, 463
NdeII	GATC	7 cut(s)	179, 433, 724, 844, 898, 949, 1030
NlaIII	CATG	6 cut(s)	251, 413, 454, 874, 878, 977
NlaIV	GGNNCC	2 cut(s)	435, 726
NsiI	ATGCAT	1 cut(s)	876
NspI	RCATGY	1 cut(s)	251
PagI	TCATGA	1 cut(s)	409
PfeI	GAWTC	3 cut(s)	377, 582, 677
PfoI	TCCNGGA	2 cut(s)	204, 585
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
PpuMI	RGGWCCY	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	204
Psp1406I	AACGTT	1 cut(s)	172
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	2 cut(s)	204, 585
PspGI	CCWGG	2 cut(s)	204, 585
PspN4I	GGNNCC	2 cut(s)	435, 726
PspPI	GGNCC	2 cut(s)	67, 853
PspPPI	RGGWCCY	1 cut(s)	67
PstI	CTGCAG	2 cut(s)	760, 832
PsuI	RGATCY	3 cut(s)	433, 724, 844
PvuII	CAGCTG	1 cut(s)	243
RsaI	GTAC	3 cut(s)	908, 992, 1073
RsaNI	GTAC	3 cut(s)	907, 991, 1072
RseI	CAYNNNNRTG	2 cut(s)	414, 768
SacI	GAGCTC	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	188, 1087
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	7 cut(s)	179, 433, 724, 844, 898, 949, 1030
Sau96I	GGNCC	2 cut(s)	67, 853
ScaI	AGTACT	3 cut(s)	908, 992, 1073
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	4 cut(s)	206, 462, 463, 587
SduI	GDGCHC	3 cut(s)	204, 399, 701
SfaNI	GCATC	5 cut(s)	205, 265, 415, 705, 760
SfcI	CTRYAG	2 cut(s)	756, 828
SinI	GGWCC	2 cut(s)	67, 853
SmaI	CCCGGG	1 cut(s)	463
SmiMI	CAYNNNNRTG	2 cut(s)	414, 768
SmlI	CTYRAG	1 cut(s)	786
SmoI	CTYRAG	1 cut(s)	786
Sse9I	AATT	3 cut(s)	185, 290, 881
SsiI	CCGC	4 cut(s)	148, 156, 469, 573
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	4 cut(s)	204, 460, 461, 585
TaaI	ACNGT	1 cut(s)	823
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	2 cut(s)	135, 182
TasI	AATT	3 cut(s)	185, 290, 881
TatI	WGTACW	3 cut(s)	906, 990, 1071
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	3 cut(s)	377, 582, 677
Tru1I	TTAA	2 cut(s)	188, 1087
Tru9I	TTAA	2 cut(s)	188, 1087
TscAI	CASTG	2 cut(s)	748, 959
TspDTI	ATGAA	2 cut(s)	249, 303
TspMI	CCCGGG	1 cut(s)	461
TspRI	CASTG	2 cut(s)	748, 959
VpaK11BI	GGWCC	2 cut(s)	67, 853
XapI	RAATTY	1 cut(s)	881
XceI	RCATGY	1 cut(s)	251
XmaI	CCCGGG	1 cut(s)	461
ZrmI	AGTACT	3 cut(s)	908, 992, 1073
Zsp2I	ATGCAT	1 cut(s)	876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.