Rh1CG216900

Coiled-coil domain containing protein (DUF2052)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006653
Physical Location & Seq
Reverse (-)
46637916 .. 46639117
1202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG216900.1

Sequence Viewer

Length: 180 bp
ATGAGTATGTGGGGAAGTTTCAGGTTCCGAGTTGTAGGAGCATGGCAAGACCTGGGGAGCGGTGGAGAAGATCACGAGTACTTAGATTACTCAAAGATAGACAATGACGAGACATTGGATGATCACTGGCAGAGAGAAGCCAACCATGACGCTGAAGAGAAGTACTTCGATGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2052

Protein Analysis

59

Amino Acids

7.04

Weight (kDa)

4.23

Isoelectric Point (pI)

28.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCD97-like_C PF09747 22 - 59 5.9e-09 Coiled-coil domain containing protein 97-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 60
AciI CCGC 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 174
AfaI GTAC 2 cut(s) 80, 164
AjnI CCWGG 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 104
Asp700I GAANNNNTTC 1 cut(s) 164
BauI CACGAG 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 53
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 104
BmcAI AGTACT 2 cut(s) 80, 164
Bme1390I CCNGG 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 52
BseGI GGATG 1 cut(s) 124
BseNI ACTGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 104
Bsp143I GATC 2 cut(s) 70, 121
BspACI CCGC 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 60
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 2 cut(s) 70, 121
BssSI CACGAG 1 cut(s) 74
Bst2BI CACGAG 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 82
BstF5I GGATG 1 cut(s) 124
BstKTI GATC 2 cut(s) 73, 124
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 2 cut(s) 70, 121
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BtsCI GGATG 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 124
CseI GACGC 1 cut(s) 158
Csp6I GTAC 2 cut(s) 79, 163
CviAII CATG 2 cut(s) 42, 146
CviJI RGCY 1 cut(s) 140
CviKI_1 RGCY 1 cut(s) 140
CviQI GTAC 2 cut(s) 79, 163
DdeI CTNAG 1 cut(s) 82
DpnI GATC 2 cut(s) 72, 123
DpnII GATC 2 cut(s) 70, 121
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 51
FaeI CATG 2 cut(s) 45, 149
FaiI YATR 3 cut(s) 8, 43, 147
FatI CATG 2 cut(s) 41, 145
FbaI TGATCA 1 cut(s) 121
FokI GGATG 1 cut(s) 131
HgaI GACGC 1 cut(s) 158
Hin1II CATG 2 cut(s) 45, 149
Hpy188I TCNGA 1 cut(s) 29
Hpy188III TCNNGA 1 cut(s) 74
HpyF3I CTNAG 1 cut(s) 82
Hsp92II CATG 2 cut(s) 45, 149
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 2 cut(s) 70, 121
LmnI GCTCC 2 cut(s) 38, 57
LpnPI CCDG 4 cut(s) 7, 38, 65, 112
MalI GATC 2 cut(s) 72, 123
MbiI CCGCTC 1 cut(s) 60
MboI GATC 2 cut(s) 70, 121
MboII GAAGA 2 cut(s) 80, 167
MnlI CCTC 1 cut(s) 166
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 1 cut(s) 178
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
NdeII GATC 2 cut(s) 70, 121
NlaIII CATG 2 cut(s) 45, 149
NlaIV GGNNCC 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 26
RsaI GTAC 2 cut(s) 80, 164
RsaNI GTAC 2 cut(s) 79, 163
SaqAI TTAA 1 cut(s) 178
Sau3AI GATC 2 cut(s) 70, 121
ScaI AGTACT 2 cut(s) 80, 164
ScrFI CCNGG 1 cut(s) 53
SetI ASST 2 cut(s) 26, 54
SsiI CCGC 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 51
TaqI TCGA 1 cut(s) 168
TatI WGTACW 2 cut(s) 78, 162
Tru1I TTAA 1 cut(s) 178
Tru9I TTAA 1 cut(s) 178
TscAI CASTG 1 cut(s) 131
TspRI CASTG 1 cut(s) 131
XmnI GAANNNNTTC 1 cut(s) 164
ZrmI AGTACT 2 cut(s) 80, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.