Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006653

Physical Location & Seq

Genomic Coordinates Reverse (-)

4365570 .. 4368125

Gene Structure 2556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04730.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAGGGAAAGGCAGTGAGAGGCGAAGCAATGGAGAGCATATCGGAGAGGCTATCGTCGTTGGAGGATCTCTACTTCCCTCGTGCCCTACAATCCAACGCCCTCAATCCCTCTGAACGCAAGGCTATACTCCTCGACCTCCTTTCGAGGGACGTCGCCGTTTTCCTAGAACGTTATGGTTCAAAATTGACCTTTGATGAGCTCCGAGAGTTTGATGCGCTCCATGATGATTATGAAATCAATTGGCATGTGAAGCATCTTAAAAGCTTAATGAGTCCAACATCAGATGAATTGAAGTCAAGGTCAGTTACAGTCAAGAACCGGAGGCGAGCATACCTGAACAAATTGATGTTTGACGGGAATTATTTCTCAGAGGACTCAATGAGAGAGAGAGAGCCATACTTGCATCATGAATATGTTGGGAAGTTTCAGGATCCCATTGGAAGGACCATGGCCAGACCCGGAGAAAGGTGGTCGGACACGTTGTTGAGGAGGGCAGAGGAAGCAGTTTTGATTTCAAAGATTAGAGGGGAGCAGCAGAGGTTGGGTGTTCCTGAAAGTGATTGGGTTGGTGGTGGTGATAGAAACCAGCAAGAAGAGCAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAGGAAGAGGATGAAGACAAAGAGGAAGCTGTGAGGGCTGACAGAGGCACACAATCTACCGAGATGCTTATCGATCATCCAGTTGCACCCAACGGTGCTCAAACTATGGATAATCGAGATGTGCCCAATGGTGCTCAAACTGCAGGTCAGTCGGATGGGCCCAACGGTACTCAAACCACCACAGGAGGGCACAGTGAGAAAGAAACTTTATCTGCGGCAGAGTTGGAAGATCAGATGGACCAGTTCACCCACATCATGCAGCAAAAGTTTTTGTTGGGAGAAGATTCCGAGTACTTAGATTACACACAAATTGACAATGACGAAACACTGGATGATCACTGGCAGAGGGAAGCCAACCATGATGCTGAGGAGAAGTACTTTGCCGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2052

Protein Analysis

344

Amino Acids

39.57

Weight (kDa)

4.47

Isoelectric Point (pI)

59.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47090 AT5G47090
fragaria_vesca	FvH4_5g20690 FvH4_5g20690
malus_domestica	MD04G1054200.v1.1
prunus_persica	Prupe.5G053300_v2.0.a1 Prupe.5G053300_v2.0.a1
pyrus_communis	pycom04g04730
rosa_chinensis	RchiOBHm_Chr7g0206421
rosa_laevigata	RLG00000003313
rosa_multiflora	Rmu_sc0003652.1_g000021 Rmu_sc0005065.1_g000026
rosa_roxburghii	Rroxscaffold_3G00251530
rosa_rugosa	Rorug07G0097400
rosa_samantha	Rh1AG232100 Rh1BG376000 Rh1CG216900 Rh1CG389800 Rh1DG406600 Rh3BG038900 Rh5AG411300 Rh7AG229000 Rh7BG225500 Rh7CG243600 Rh7DG236000
rosa_wichuraiana	Rw7G019710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	156
Acc36I	ACCTGC	1 cut(s)	773
AciI	CCGC	1 cut(s)	854
AclI	AACGTT	1 cut(s)	172
AclWI	GGATC	3 cut(s)	75, 428, 441
AcoI	YGGCCR	1 cut(s)	453
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	3 cut(s)	808, 932, 1016
AfiI	CCNNNNNNNGG	4 cut(s)	148, 444, 468, 825
AflIII	ACRYGT	1 cut(s)	480
AgsI	TTSAA	3 cut(s)	183, 295, 519
AluBI	AGCT	3 cut(s)	202, 267, 668
AluI	AGCT	3 cut(s)	202, 267, 668
Alw21I	GWGCWC	3 cut(s)	204, 739, 775
AlwI	GGATC	3 cut(s)	75, 428, 441
AoxI	GGCC	2 cut(s)	453, 797
ApaI	GGGCCC	1 cut(s)	801
ApeKI	GCWGC	2 cut(s)	535, 898
ArsI	GACNNNNNNTTYG	2 cut(s)	769, 801
Asp700I	GAANNNNTTC	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	4 cut(s)	447, 797, 798, 877
AsuC2I	CCSGG	1 cut(s)	462
AsuHPI	GGTGA	2 cut(s)	590, 877
AvaII	GGWCC	2 cut(s)	447, 877
BaeGI	GKGCMC	4 cut(s)	88, 765, 801, 831
BalI	TGGCCA	1 cut(s)	455
BamHI	GGATCC	1 cut(s)	433
BanII	GRGCYC	2 cut(s)	204, 801
BauI	CACGAG	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	660
Bbv12I	GWGCWC	3 cut(s)	204, 739, 775
BbvCI	CCTCAGC	1 cut(s)	1005
BbvI	GCAGC	2 cut(s)	547, 910
BccI	CCATC	2 cut(s)	788, 868
BceAI	ACGGC	1 cut(s)	143
BcgI	CGANNNNNNTGC	2 cut(s)	771, 805
BclI	TGATCA	1 cut(s)	973
BcnI	CCSGG	1 cut(s)	462
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	780
BfuAI	ACCTGC	1 cut(s)	773
BisI	GCNGC	3 cut(s)	536, 855, 899
BlsI	GCNGC	3 cut(s)	537, 856, 900
BmcAI	AGTACT	2 cut(s)	932, 1016
Bme1390I	CCNGG	1 cut(s)	462
Bme18I	GGWCC	2 cut(s)	447, 877
BmgT120I	GGNCC	4 cut(s)	447, 797, 798, 877
BmiI	GGNNCC	2 cut(s)	435, 799
BmrFI	CCNGG	1 cut(s)	462
BmsI	GCATC	5 cut(s)	205, 265, 415, 693, 991
BpiI	GAAGAC	1 cut(s)	660
Bpu10I	CCTNAGC	1 cut(s)	1005
BpuMI	CCSGG	1 cut(s)	462
Bsa29I	ATCGAT	1 cut(s)	711
BsaBI	GATNNNNATC	1 cut(s)	707
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	450, 1023
BsaWI	WCCGGW	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 444, 468, 825
Bse1I	ACTGG	4 cut(s)	719, 880, 972, 983
Bse3DI	GCAATG	1 cut(s)	36
Bse8I	GATNNNNATC	1 cut(s)	707
BseCI	ATCGAT	1 cut(s)	711
BseDI	CCNNGG	2 cut(s)	450, 1023
BseGI	GGATG	4 cut(s)	655, 715, 799, 976
BseJI	GATNNNNATC	1 cut(s)	707
BseLI	CCNNNNNNNGG	4 cut(s)	148, 444, 468, 825
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	384, 996
BseNI	ACTGG	4 cut(s)	719, 880, 972, 983
BseRI	GAGGAG	9 cut(s)	122, 505, 620, 623, 626, 629, 632, 635, 1022
BseSI	GKGCMC	4 cut(s)	88, 765, 801, 831
BseXI	GCAGC	2 cut(s)	547, 910
BshFI	GGCC	2 cut(s)	455, 799
BshVI	ATCGAT	1 cut(s)	711
BsiHKAI	GWGCWC	3 cut(s)	204, 739, 775
BsiSI	CCGG	2 cut(s)	322, 462
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	4 cut(s)	148, 444, 468, 825
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	2 cut(s)	455, 799
Bsp120I	GGGCCC	1 cut(s)	797
Bsp1286I	GDGCHC	7 cut(s)	88, 204, 739, 765, 775, 801, 831
Bsp143I	GATC	5 cut(s)	67, 433, 712, 868, 973
Bsp19I	CCATGG	1 cut(s)	450
BspACI	CCGC	1 cut(s)	854
BspANI	GGCC	2 cut(s)	455, 799
BspCNI	CTCAG	2 cut(s)	383, 997
BspDI	ATCGAT	1 cut(s)	711
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	435, 799
BspMAI	CTGCAG	1 cut(s)	784
BspMI	ACCTGC	1 cut(s)	773
BspPI	GGATC	3 cut(s)	75, 428, 441
BspQI	GCTCTTC	1 cut(s)	591
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	4 cut(s)	719, 880, 972, 983
BssECI	CCNNGG	2 cut(s)	450, 1023
BssMI	GATC	5 cut(s)	67, 433, 712, 868, 973
BssNI	GRCGYC	1 cut(s)	153
BssSI	CACGAG	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	450
Bst2BI	CACGAG	1 cut(s)	81
Bst4CI	ACNGT	4 cut(s)	313, 734, 806, 833
Bst6I	CTCTTC	3 cut(s)	591, 633, 639
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	3 cut(s)	370, 934, 1005
BstDSI	CCRYGG	1 cut(s)	450
BstF5I	GGATG	4 cut(s)	655, 715, 799, 976
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	5 cut(s)	70, 436, 715, 871, 976
BstMBI	GATC	5 cut(s)	67, 433, 712, 868, 973
BstMWI	GCNNNNNNNGC	6 cut(s)	253, 403, 503, 598, 674, 779
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	460
BstSFI	CTRYAG	1 cut(s)	780
BstSLI	GKGCMC	4 cut(s)	88, 765, 801, 831
BstV1I	GCAGC	2 cut(s)	547, 910
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	2 cut(s)	67, 433
BstYI	RGATCY	2 cut(s)	67, 433
Bsu15I	ATCGAT	1 cut(s)	711
BsuRI	GGCC	2 cut(s)	455, 799
BsuTUI	ATCGAT	1 cut(s)	711
BtgI	CCRYGG	1 cut(s)	450
BtsCI	GGATG	4 cut(s)	655, 715, 799, 976
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	4 cut(s)	21, 838, 965, 976
BveI	ACCTGC	1 cut(s)	773
Cac8I	GCNNGC	1 cut(s)	330
CciI	TCATGA	1 cut(s)	409
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	4 cut(s)	447, 797, 798, 877
ClaI	ATCGAT	1 cut(s)	711
Csp6I	GTAC	3 cut(s)	807, 931, 1015
CviAII	CATG	6 cut(s)	224, 248, 410, 451, 895, 998
CviQI	GTAC	3 cut(s)	807, 931, 1015
DdeI	CTNAG	3 cut(s)	370, 934, 1005
DpnI	GATC	5 cut(s)	69, 435, 714, 870, 975
DpnII	GATC	5 cut(s)	67, 433, 712, 868, 973
EaeI	YGGCCR	1 cut(s)	453
Eam1104I	CTCTTC	3 cut(s)	591, 633, 639
EarI	CTCTTC	3 cut(s)	591, 633, 639
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	450
Eco24I	GRGCYC	2 cut(s)	204, 801
Eco47I	GGWCC	2 cut(s)	447, 877
Eco53kI	GAGCTC	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	450
EcoT38I	GRGCYC	2 cut(s)	204, 801
ErhI	CCWWGG	1 cut(s)	450
FaeI	CATG	6 cut(s)	227, 251, 413, 454, 898, 1001
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	6 cut(s)	223, 247, 409, 450, 894, 997
FbaI	TGATCA	1 cut(s)	973
Fnu4HI	GCNGC	3 cut(s)	536, 855, 899
FokI	GGATG	4 cut(s)	662, 702, 806, 983
FriOI	GRGCYC	2 cut(s)	204, 801
Fsp4HI	GCNGC	3 cut(s)	536, 855, 899
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	3 cut(s)	536, 855, 899
HaeIII	GGCC	2 cut(s)	455, 799
HapII	CCGG	2 cut(s)	322, 462
HhaI	GCGC	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	6 cut(s)	227, 251, 413, 454, 898, 1001
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HindIII	AAGCTT	1 cut(s)	265
HinfI	GANTC	3 cut(s)	274, 377, 923
HpaII	CCGG	2 cut(s)	322, 462
HphI	GGTGA	2 cut(s)	590, 877
Hpy166II	GTNNAC	1 cut(s)	885
Hpy188I	TCNGA	9 cut(s)	46, 115, 206, 286, 373, 478, 793, 873, 928
Hpy188III	TCNNGA	5 cut(s)	316, 410, 431, 554, 755
Hpy8I	GTNNAC	1 cut(s)	885
Hpy99I	CGWCG	2 cut(s)	61, 158
HpyAV	CCTTC	1 cut(s)	438
HpyCH4III	ACNGT	4 cut(s)	313, 734, 806, 833
HpyCH4IV	ACGT	3 cut(s)	153, 172, 482
HpyCH4V	TGCA	4 cut(s)	406, 725, 782, 898
HpyF10VI	GCNNNNNNNGC	6 cut(s)	253, 403, 503, 598, 674, 779
HpyF3I	CTNAG	3 cut(s)	370, 934, 1005
HpySE526I	ACGT	3 cut(s)	153, 172, 482
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	6 cut(s)	227, 251, 413, 454, 898, 1001
HspAI	GCGC	1 cut(s)	218
Ksp22I	TGATCA	1 cut(s)	973
Kzo9I	GATC	5 cut(s)	67, 433, 712, 868, 973
LguI	GCTCTTC	1 cut(s)	591
LmnI	GCTCC	3 cut(s)	207, 225, 532
Lsp1109I	GCAGC	2 cut(s)	547, 910
LweI	GCATC	5 cut(s)	205, 265, 415, 693, 991
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	3 cut(s)	153, 172, 482
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	5 cut(s)	69, 435, 714, 870, 975
MboI	GATC	5 cut(s)	67, 433, 712, 868, 973
MfeI	CAATTG	1 cut(s)	241
MflI	RGATCY	2 cut(s)	67, 433
MhlI	GDGCHC	7 cut(s)	88, 204, 739, 765, 775, 801, 831
MlsI	TGGCCA	1 cut(s)	455
MluCI	AATT	6 cut(s)	185, 241, 290, 344, 361, 948
MluNI	TGGCCA	1 cut(s)	455
MlyI	GAGTC	2 cut(s)	283, 371
MmeI	TCCRAC	6 cut(s)	42, 120, 302, 456, 771, 843
Mox20I	TGGCCA	1 cut(s)	455
MroXI	GAANNNNTTC	1 cut(s)	365
MscI	TGGCCA	1 cut(s)	455
MseI	TTAA	2 cut(s)	261, 269
MslI	CAYNNNNRTG	1 cut(s)	414
Msp20I	TGGCCA	1 cut(s)	455
MspI	CCGG	2 cut(s)	322, 462
MspR9I	CCNGG	1 cut(s)	462
MunI	CAATTG	1 cut(s)	241
MwoI	GCNNNNNNNGC	6 cut(s)	253, 403, 503, 598, 674, 779
NciI	CCSGG	1 cut(s)	462
NcoI	CCATGG	1 cut(s)	450
NdeII	GATC	5 cut(s)	67, 433, 712, 868, 973
NlaIII	CATG	6 cut(s)	227, 251, 413, 454, 898, 1001
NlaIV	GGNNCC	2 cut(s)	435, 799
NspI	RCATGY	1 cut(s)	251
PagI	TCATGA	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	591
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	1 cut(s)	923
PkrI	GCNGC	3 cut(s)	537, 856, 900
PleI	GAGTC	2 cut(s)	282, 371
PpsI	GAGTC	2 cut(s)	282, 371
Psp124BI	GAGCTC	1 cut(s)	204
Psp1406I	AACGTT	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	435, 799
PspOMI	GGGCCC	1 cut(s)	797
PspPI	GGNCC	4 cut(s)	447, 797, 798, 877
PstI	CTGCAG	1 cut(s)	784
PsuI	RGATCY	2 cut(s)	67, 433
RsaI	GTAC	3 cut(s)	808, 932, 1016
RsaNI	GTAC	3 cut(s)	807, 931, 1015
RseI	CAYNNNNRTG	1 cut(s)	414
SacI	GAGCTC	1 cut(s)	204
SapI	GCTCTTC	1 cut(s)	591
SaqAI	TTAA	2 cut(s)	261, 269
SatI	GCNGC	3 cut(s)	536, 855, 899
Sau3AI	GATC	5 cut(s)	67, 433, 712, 868, 973
Sau96I	GGNCC	4 cut(s)	447, 797, 798, 877
ScaI	AGTACT	2 cut(s)	932, 1016
SchI	GAGTC	2 cut(s)	283, 371
ScrFI	CCNGG	1 cut(s)	462
SduI	GDGCHC	7 cut(s)	88, 204, 739, 765, 775, 801, 831
SfaNI	GCATC	5 cut(s)	205, 265, 415, 693, 991
SfcI	CTRYAG	1 cut(s)	780
SinI	GGWCC	2 cut(s)	447, 877
SmiMI	CAYNNNNRTG	1 cut(s)	414
Sse9I	AATT	6 cut(s)	185, 241, 290, 344, 361, 948
SsiI	CCGC	1 cut(s)	854
SspMI	CTAG	1 cut(s)	167
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	460
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	4 cut(s)	313, 734, 806, 833
TaiI	ACGT	3 cut(s)	156, 175, 485
TaqI	TCGA	4 cut(s)	135, 146, 711, 754
TasI	AATT	6 cut(s)	185, 241, 290, 344, 361, 948
TatI	WGTACW	2 cut(s)	930, 1014
TauI	GCSGC	1 cut(s)	857
TfiI	GAWTC	1 cut(s)	923
Tru1I	TTAA	2 cut(s)	261, 269
Tru9I	TTAA	2 cut(s)	261, 269
TscAI	CASTG	4 cut(s)	21, 838, 972, 983
TseI	GCWGC	2 cut(s)	535, 898
TspDTI	ATGAA	4 cut(s)	249, 303, 426, 666
TspRI	CASTG	4 cut(s)	21, 838, 972, 983
VpaK11BI	GGWCC	2 cut(s)	447, 877
XceI	RCATGY	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	1 cut(s)	167
ZraI	GACGTC	1 cut(s)	154
ZrmI	AGTACT	2 cut(s)	932, 1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.