Rh1AG232100

Coiled-coil domain containing protein (DUF2052)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0006653
Physical Location & Seq
Reverse (-)
44153043 .. 44155653
2611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG232100.1

Sequence Viewer

Length: 159 bp
ATGGACCAGTTCACCTACATCATGCATGAGAAATTTTTGTTAGGAGAAGATCACGAGTACTTAGATTACTCAAAGATAGACAATGACGAGACATTGGATGATCACTGGCAGAGAGAAGCCAACCATGACGCTGAAGAGAAGTACTTCGATGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2052

Protein Analysis

52

Amino Acids

6.49

Weight (kDa)

4.19

Isoelectric Point (pI)

31.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCD97-like_C PF09747 2 - 52 3.4e-16 Coiled-coil domain containing protein 97-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 32
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 2 cut(s) 59, 143
Alw26I GTCTC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 32
Asp700I GAANNNNTTC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 53
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 83
BmcAI AGTACT 2 cut(s) 59, 143
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
Bse1I ACTGG 2 cut(s) 7, 110
BseGI GGATG 1 cut(s) 103
BseNI ACTGG 2 cut(s) 7, 110
BsmAI GTCTC 1 cut(s) 83
Bsp143I GATC 2 cut(s) 49, 100
BsrI ACTGG 2 cut(s) 7, 110
BssMI GATC 2 cut(s) 49, 100
BssSI CACGAG 1 cut(s) 53
Bst2BI CACGAG 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 129
BstDEI CTNAG 1 cut(s) 61
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 2 cut(s) 52, 103
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 2 cut(s) 49, 100
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 137
Csp6I GTAC 2 cut(s) 58, 142
CviAII CATG 3 cut(s) 22, 26, 125
CviJI RGCY 1 cut(s) 119
CviKI_1 RGCY 1 cut(s) 119
CviQI GTAC 2 cut(s) 58, 142
DdeI CTNAG 1 cut(s) 61
DpnI GATC 2 cut(s) 51, 102
DpnII GATC 2 cut(s) 49, 100
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 27
FaeI CATG 3 cut(s) 25, 29, 128
FaiI YATR 3 cut(s) 23, 27, 126
FatI CATG 3 cut(s) 21, 25, 124
FbaI TGATCA 1 cut(s) 100
FokI GGATG 1 cut(s) 110
FspEI CC 8 cut(s) 20, 27, 28, 80, 91, 133, 137, 137
HgaI GACGC 1 cut(s) 137
Hin1II CATG 3 cut(s) 25, 29, 128
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 1 cut(s) 12
HpyCH4V TGCA 1 cut(s) 25
HpyF3I CTNAG 1 cut(s) 61
Hsp92II CATG 3 cut(s) 25, 29, 128
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 2 cut(s) 49, 100
LpnPI CCDG 2 cut(s) 20, 91
MalI GATC 2 cut(s) 51, 102
MboI GATC 2 cut(s) 49, 100
MboII GAAGA 2 cut(s) 59, 146
MluCI AATT 1 cut(s) 32
MnlI CCTC 1 cut(s) 145
Mph1103I ATGCAT 1 cut(s) 27
MroXI GAANNNNTTC 1 cut(s) 143
MseI TTAA 1 cut(s) 157
NdeII GATC 2 cut(s) 49, 100
NlaIII CATG 3 cut(s) 25, 29, 128
NsiI ATGCAT 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 143
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 2 cut(s) 59, 143
RsaNI GTAC 2 cut(s) 58, 142
SaqAI TTAA 1 cut(s) 157
Sau3AI GATC 2 cut(s) 49, 100
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 2 cut(s) 59, 143
SetI ASST 1 cut(s) 17
SgeI CNNG 8 cut(s) 19, 34, 38, 65, 67, 100, 118, 137
SinI GGWCC 1 cut(s) 4
Sse9I AATT 1 cut(s) 32
TaqI TCGA 1 cut(s) 147
TasI AATT 1 cut(s) 32
TatI WGTACW 2 cut(s) 57, 141
Tru1I TTAA 1 cut(s) 157
Tru9I TTAA 1 cut(s) 157
TscAI CASTG 1 cut(s) 110
TspRI CASTG 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 143
ZrmI AGTACT 2 cut(s) 59, 143
Zsp2I ATGCAT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.