Rw7G019710

Coiled-coil domain containing protein (DUF2052)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0006653
Physical Location & Seq
Forward (+)
21937157 .. 21939258
2102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G019710.1

Sequence Viewer

Length: 1005 bp
ATGGAGACGAAGGTAGTGAGAAGCGAAGCGATAGAGAGCATATCGGACAGGCTATCAGCGTCGGAGGACCTCTACTTCCCTCGCGCCCTGCAATCCACCACCATCACCCCCTCTCAGCGCAAGGCCATTCTCCTCGACCTCCTCTCCCGCGACGCCGCCGTTTTCTTAGAACGTTATGGATCGAAATTAACATCTGAGGAGCTCCTGGAGTTTGATGCGCTGACAGATGACTATGAAGTCAGCTGGCATGTGAAGCATCTTAGAAGTTTATTGAGTCCGACATCGGATGAATTGAAATCAAGAGCAGTTCAAGTGAAGAACAGGAGGCGAGCCTACCTGAATAAGTTGATATTTGATGGGCAGTATTTCTCGGAGGATTCAATGAGGGAGAGAGAGCCCTACTTGCATCATGAGTATGTGGGGAAGTTTCAGGATCCGAGTGGTAGGAGCATGGCAAGACCCGGGGAGCGGTGGTCAGATACTTTGTTGAGGAGAGGGGAGCAACAGAGGTTGGGTGTTGCTGAGAGTGATTGGGTTGGCGGTGAGAGAATCCAGGAAGTAGAGGAACAGGAGGAGGAAGAAGAAGAGGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAATCTAACGAGGCTAATGGGGGCACACAATCATCAGAGTGGTGCTGAAACTGCAGACCATCCGGATGCACCCAATGTTGCTCAAGCAACCACAGCAGGGCAGAGTGAGCAAGCAACTGTATCTGCAGAAGAGTTGCAAGATCTGATGGACCAGTTCACCTACATCATGCATGAGAAATTTTTGTTAGGTGAAGATCACGAGTACTTAGATTACTCAAAGATAGACAACGACGAGACATTGGATGATCACTGGCAGAGAGAAGCCAACCATGACGCTGAAGAGAAGTACTTTGATGACATTATTGATGAGGACGAGACATTGGATGATCACCGGCAGAGAGAAGTGAGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2052

Protein Analysis

334

Amino Acids

39.26

Weight (kDa)

4.69

Isoelectric Point (pI)

75.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCD97-like_C PF09747 107 - 316 9.1e-49 Coiled-coil domain containing protein 97-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
AccBSI CCGCTC 1 cut(s) 469
AccII CGCG 2 cut(s) 84, 150
AccIII TCCGGA 1 cut(s) 712
AciI CCGC 4 cut(s) 148, 156, 469, 540
AclI AACGTT 1 cut(s) 172
AclWI GGATC 3 cut(s) 187, 428, 441
AcsI RAATTY 1 cut(s) 827
AcuI CTGAAG 1 cut(s) 948
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 2 cut(s) 854, 938
AfiI CCNNNNNNNGG 2 cut(s) 468, 747
AgsI TTSAA 3 cut(s) 295, 311, 381
AjnI CCWGG 2 cut(s) 204, 552
AluBI AGCT 2 cut(s) 202, 243
AluI AGCT 2 cut(s) 202, 243
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 2 cut(s) 878, 959
AlwI GGATC 3 cut(s) 187, 428, 441
Ama87I CYCGRG 1 cut(s) 461
Aor13HI TCCGGA 1 cut(s) 712
AoxI GGCC 1 cut(s) 123
ApoI RAATTY 1 cut(s) 827
AspLEI GCGC 3 cut(s) 86, 120, 220
AspS9I GGNCC 2 cut(s) 67, 799
AsuC2I CCSGG 2 cut(s) 462, 463
AsuHPI GGTGA 5 cut(s) 97, 554, 799, 851, 971
AvaI CYCGRG 1 cut(s) 461
AvaII GGWCC 2 cut(s) 67, 799
BaeGI GKGCMC 1 cut(s) 676
BamHI GGATCC 1 cut(s) 433
BanII GRGCYC 2 cut(s) 204, 399
BauI CACGAG 1 cut(s) 848
Bbv12I GWGCWC 1 cut(s) 204
BccI CCATC 4 cut(s) 110, 350, 717, 790
BceAI ACGGC 1 cut(s) 143
BciT130I CCWGG 2 cut(s) 206, 554
BclI TGATCA 2 cut(s) 895, 976
BcnI CCSGG 2 cut(s) 462, 463
BcoDI GTCTC 2 cut(s) 878, 959
BfmI CTRYAG 2 cut(s) 702, 774
BglII AGATCT 1 cut(s) 790
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BmcAI AGTACT 2 cut(s) 854, 938
Bme1390I CCNGG 4 cut(s) 206, 462, 463, 554
Bme18I GGWCC 2 cut(s) 67, 799
BmeT110I CYCGRG 1 cut(s) 461
BmgT120I GGNCC 2 cut(s) 67, 799
BmiI GGNNCC 1 cut(s) 435
BmrFI CCNGG 4 cut(s) 206, 462, 463, 554
BmsI GCATC 4 cut(s) 205, 265, 415, 706
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 717
BpuMI CCSGG 2 cut(s) 462, 463
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 2 cut(s) 461, 462
BsaWI WCCGGW 1 cut(s) 712
BsaXI ACNNNNNCTCC 4 cut(s) 128, 158, 458, 488
Bsc4I CCNNNNNNNGG 2 cut(s) 468, 747
Bse118I RCCGGY 1 cut(s) 981
Bse1I ACTGG 2 cut(s) 802, 905
BseAI TCCGGA 1 cut(s) 712
BseBI CCWGG 2 cut(s) 206, 554
BseDI CCNNGG 2 cut(s) 461, 462
BseGI GGATG 5 cut(s) 292, 709, 721, 898, 979
BseLI CCNNNNNNNGG 2 cut(s) 468, 747
BseMII CTCAG 3 cut(s) 128, 186, 513
BseNI ACTGG 2 cut(s) 802, 905
BseSI GKGCMC 1 cut(s) 676
Bsh1236I CGCG 2 cut(s) 84, 150
BshFI GGCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 3 cut(s) 462, 713, 982
BslI CCNNNNNNNGG 2 cut(s) 468, 747
BsmAI GTCTC 2 cut(s) 878, 959
BsnI GGCC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 461
Bsp1286I GDGCHC 3 cut(s) 204, 399, 676
Bsp13I TCCGGA 1 cut(s) 712
Bsp143I GATC 6 cut(s) 179, 433, 790, 844, 895, 976
BspACI CCGC 4 cut(s) 148, 156, 469, 540
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 3 cut(s) 127, 187, 514
BspEI TCCGGA 1 cut(s) 712
BspFNI CGCG 2 cut(s) 84, 150
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 1 cut(s) 435
BspMAI CTGCAG 2 cut(s) 706, 778
BspPI GGATC 3 cut(s) 187, 428, 441
BsrBI CCGCTC 1 cut(s) 469
BsrFI RCCGGY 1 cut(s) 981
BsrI ACTGG 2 cut(s) 802, 905
BssAI RCCGGY 1 cut(s) 981
BssECI CCNNGG 2 cut(s) 461, 462
BssMI GATC 6 cut(s) 179, 433, 790, 844, 895, 976
BssNI GRCGYC 1 cut(s) 153
BssSI CACGAG 1 cut(s) 848
Bst2BI CACGAG 1 cut(s) 848
Bst2UI CCWGG 2 cut(s) 206, 554
Bst4CI ACNGT 1 cut(s) 769
Bst6I CTCTTC 9 cut(s) 579, 588, 594, 600, 606, 612, 623, 774, 924
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 3 cut(s) 245, 330, 762
BstDEI CTNAG 6 cut(s) 114, 166, 195, 260, 522, 856
BstF5I GGATG 5 cut(s) 292, 709, 721, 898, 979
BstFNI CGCG 2 cut(s) 84, 150
BstHHI GCGC 3 cut(s) 86, 120, 220
BstKTI GATC 6 cut(s) 182, 436, 793, 847, 898, 979
BstMAI GTCTC 2 cut(s) 878, 959
BstMBI GATC 6 cut(s) 179, 433, 790, 844, 895, 976
BstMWI GCNNNNNNNGC 5 cut(s) 253, 403, 701, 743, 757
BstNI CCWGG 2 cut(s) 206, 554
BstNSI RCATGY 1 cut(s) 251
BstSCI CCNGG 4 cut(s) 204, 460, 461, 552
BstSFI CTRYAG 2 cut(s) 702, 774
BstSLI GKGCMC 1 cut(s) 676
BstUI CGCG 2 cut(s) 84, 150
BstX2I RGATCY 2 cut(s) 433, 790
BstYI RGATCY 2 cut(s) 433, 790
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 5 cut(s) 292, 709, 721, 898, 979
BtsIMutI CAGTG 1 cut(s) 898
Cac8I GCNNGC 3 cut(s) 245, 330, 762
CciI TCATGA 1 cut(s) 409
CfoI GCGC 3 cut(s) 86, 120, 220
Cfr10I RCCGGY 1 cut(s) 981
Cfr13I GGNCC 2 cut(s) 67, 799
Cfr9I CCCGGG 1 cut(s) 461
CseI GACGC 3 cut(s) 48, 161, 932
Csp6I GTAC 2 cut(s) 853, 937
CviAII CATG 6 cut(s) 248, 410, 451, 817, 821, 920
CviJI RGCY 8 cut(s) 52, 125, 202, 243, 332, 397, 664, 914
CviKI_1 RGCY 8 cut(s) 52, 125, 202, 243, 332, 397, 664, 914
CviQI GTAC 2 cut(s) 853, 937
DdeI CTNAG 6 cut(s) 114, 166, 195, 260, 522, 856
DpnI GATC 6 cut(s) 181, 435, 792, 846, 897, 978
DpnII GATC 6 cut(s) 179, 433, 790, 844, 895, 976
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
Eam1104I CTCTTC 9 cut(s) 579, 588, 594, 600, 606, 612, 623, 774, 924
EarI CTCTTC 9 cut(s) 579, 588, 594, 600, 606, 612, 623, 774, 924
Ecl136II GAGCTC 1 cut(s) 202
Eco24I GRGCYC 2 cut(s) 204, 399
Eco47I GGWCC 2 cut(s) 67, 799
Eco53kI GAGCTC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 948
Eco88I CYCGRG 1 cut(s) 461
EcoICRI GAGCTC 1 cut(s) 202
EcoO109I RGGNCCY 1 cut(s) 67
EcoRII CCWGG 2 cut(s) 204, 552
EcoT22I ATGCAT 1 cut(s) 822
EcoT38I GRGCYC 2 cut(s) 204, 399
FaeI CATG 6 cut(s) 251, 413, 454, 820, 824, 923
FatI CATG 6 cut(s) 247, 409, 450, 816, 820, 919
FauI CCCGC 1 cut(s) 155
FbaI TGATCA 2 cut(s) 895, 976
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 5 cut(s) 299, 696, 728, 905, 986
FriOI GRGCYC 2 cut(s) 204, 399
Fsp4HI GCNGC 1 cut(s) 156
GlaI GCGC 3 cut(s) 85, 119, 219
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 1 cut(s) 125
HapII CCGG 3 cut(s) 462, 713, 982
HgaI GACGC 3 cut(s) 48, 161, 932
HhaI GCGC 3 cut(s) 86, 120, 220
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 6 cut(s) 251, 413, 454, 820, 824, 923
Hin6I GCGC 3 cut(s) 84, 118, 218
HinP1I GCGC 3 cut(s) 84, 118, 218
HinfI GANTC 4 cut(s) 274, 377, 549, 652
HpaII CCGG 3 cut(s) 462, 713, 982
HphI GGTGA 5 cut(s) 97, 554, 799, 851, 971
Hpy166II GTNNAC 1 cut(s) 807
Hpy188III TCNNGA 5 cut(s) 300, 410, 431, 713, 848
Hpy8I GTNNAC 1 cut(s) 807
Hpy99I CGWCG 3 cut(s) 64, 155, 884
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 1 cut(s) 769
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 7 cut(s) 91, 406, 704, 719, 776, 787, 820
HpyF10VI GCNNNNNNNGC 5 cut(s) 253, 403, 701, 743, 757
HpyF3I CTNAG 6 cut(s) 114, 166, 195, 260, 522, 856
HpySE526I ACGT 1 cut(s) 172
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 6 cut(s) 251, 413, 454, 820, 824, 923
HspAI GCGC 3 cut(s) 84, 118, 218
Kpn2I TCCGGA 1 cut(s) 712
Ksp22I TGATCA 2 cut(s) 895, 976
Kzo9I GATC 6 cut(s) 179, 433, 790, 844, 895, 976
LmnI GCTCC 5 cut(s) 199, 207, 447, 466, 499
LweI GCATC 4 cut(s) 205, 265, 415, 706
MaeII ACGT 1 cut(s) 172
MalI GATC 6 cut(s) 181, 435, 792, 846, 897, 978
MbiI CCGCTC 1 cut(s) 469
MboI GATC 6 cut(s) 179, 433, 790, 844, 895, 976
MflI RGATCY 2 cut(s) 433, 790
MhlI GDGCHC 3 cut(s) 204, 399, 676
MluCI AATT 3 cut(s) 185, 290, 827
MlyI GAGTC 1 cut(s) 283
MmeI TCCRAC 2 cut(s) 42, 302
Mph1103I ATGCAT 1 cut(s) 822
MroI TCCGGA 1 cut(s) 712
MseI TTAA 1 cut(s) 188
MslI CAYNNNNRTG 3 cut(s) 414, 687, 714
MspA1I CMGCKG 1 cut(s) 243
MspI CCGG 3 cut(s) 462, 713, 982
MspR9I CCNGG 4 cut(s) 206, 462, 463, 554
MvaI CCWGG 2 cut(s) 206, 554
MvnI CGCG 2 cut(s) 84, 150
MwoI GCNNNNNNNGC 5 cut(s) 253, 403, 701, 743, 757
NciI CCSGG 2 cut(s) 462, 463
NdeII GATC 6 cut(s) 179, 433, 790, 844, 895, 976
NlaIII CATG 6 cut(s) 251, 413, 454, 820, 824, 923
NlaIV GGNNCC 1 cut(s) 435
NsiI ATGCAT 1 cut(s) 822
NspI RCATGY 1 cut(s) 251
PagI TCATGA 1 cut(s) 409
PfeI GAWTC 3 cut(s) 377, 549, 652
PfoI TCCNGGA 2 cut(s) 204, 552
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
PpuMI RGGWCCY 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 204
Psp1406I AACGTT 1 cut(s) 172
Psp5II RGGWCCY 1 cut(s) 67
Psp6I CCWGG 2 cut(s) 204, 552
PspGI CCWGG 2 cut(s) 204, 552
PspN4I GGNNCC 1 cut(s) 435
PspPI GGNCC 2 cut(s) 67, 799
PspPPI RGGWCCY 1 cut(s) 67
PstI CTGCAG 2 cut(s) 706, 778
PsuI RGATCY 2 cut(s) 433, 790
PvuII CAGCTG 1 cut(s) 243
RsaI GTAC 2 cut(s) 854, 938
RsaNI GTAC 2 cut(s) 853, 937
RseI CAYNNNNRTG 3 cut(s) 414, 687, 714
SacI GAGCTC 1 cut(s) 204
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 6 cut(s) 179, 433, 790, 844, 895, 976
Sau96I GGNCC 2 cut(s) 67, 799
ScaI AGTACT 2 cut(s) 854, 938
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 4 cut(s) 206, 462, 463, 554
SduI GDGCHC 3 cut(s) 204, 399, 676
SfaNI GCATC 4 cut(s) 205, 265, 415, 706
SfcI CTRYAG 2 cut(s) 702, 774
SinI GGWCC 2 cut(s) 67, 799
SmaI CCCGGG 1 cut(s) 463
SmiMI CAYNNNNRTG 3 cut(s) 414, 687, 714
SmlI CTYRAG 1 cut(s) 732
SmoI CTYRAG 1 cut(s) 732
Sse9I AATT 3 cut(s) 185, 290, 827
SsiI CCGC 4 cut(s) 148, 156, 469, 540
SstI GAGCTC 1 cut(s) 204
StyD4I CCNGG 4 cut(s) 204, 460, 461, 552
TaaI ACNGT 1 cut(s) 769
TaiI ACGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 135, 182
TasI AATT 3 cut(s) 185, 290, 827
TatI WGTACW 2 cut(s) 852, 936
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 3 cut(s) 377, 549, 652
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TscAI CASTG 1 cut(s) 905
TspDTI ATGAA 2 cut(s) 249, 303
TspMI CCCGGG 1 cut(s) 461
TspRI CASTG 1 cut(s) 905
VpaK11BI GGWCC 2 cut(s) 67, 799
XapI RAATTY 1 cut(s) 827
XceI RCATGY 1 cut(s) 251
XmaI CCCGGG 1 cut(s) 461
ZrmI AGTACT 2 cut(s) 854, 938
Zsp2I ATGCAT 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.