Rh7CG243600

Coiled-coil domain containing protein (DUF2052)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0006653
Physical Location & Seq
Forward (+)
22799998 .. 22802345
2348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG243600.1

Sequence Viewer

Length: 1071 bp
ATGGAGACGAAGGTAGTGAGAAGCGAAGCGATAGAGAGCATATCGGACAGGCTATCGGCGTCGGAGGACCTCTACTTCCCTCGCGCCCTGCAATCCACCACCATCACCCCCTCTCAGCGCAAGGCCATTCTCCTCGACCTCCTATCCCGCGACGCTGCCGTCTTCTTAGAACGTTATGGATCAAAATTAACATCTGAGGAGCTCCTGGAGTTTGATGCGCTGACAGATGACTATGAAGTCAGCTGGCATGTGAAGCATCTTAGAAGTTTATTGAGTCCAACATCGGATGAATTGAAATCAAGAGCAGTTCAAGTGAAGAACAGGAGGCGAGCCTACCTGAATAAATTGATATTTGATGGGCAGTATTTCTCGGAGGATTCAATGAGGGAGAGAGAGCCCTACTTGCATCATGAGTATGTGGGGAAGTTTCAGGATCCGAGTGGTAGGAGCATGGCAAGACCTGGGGAGCGGTGGTCAGATACTTTGTTGAGGAGGTCAGAGGAAGCGATTTTGGTAGCAAAGATTAGAGGGGAGCAACAGAGGTTGGGTGTTGCTGAGAGTGATTGGGTTGGCGTTGAGAGAATCCAGGAAGTAGAGGAACAGGAGGAGGAAGAAGAAGAGGAGGAAGAGGAAGAAGAAGAGGAGGAGGAGGAGGAAGAATCTAACGAGGCTAATGGGGGCACACAATCATCAGAGATGTTGGTGGATCCTCTGGATGCGCCCAATGTTGCTGAAACTGCAGACCATCCGGATGCGCCCAATGTTGCTCAAGCAACCACAGCAGGGCAGAGTGAGCAAGCAACTGTATCTGTAGAAGAGTTGCAAGATCTGATGGACCAGTTCACCTACATCATGCATGAGAAATTTTTGTTAGGTGAAGATCACGAGTACTTAGATTACTCAAAGATAGACAACGACGAGACATTGGATGATCACTGGCAGAGAGAAGCCAACCATGACGCTGAAGAGAAGTACTTTGATGACATTATTGATGAGGACGAGACATTGGATGATCACCGGCAGAGAGAAGTGAACCATGACGCTGAACAGAAGTACTTTGATGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2052

Protein Analysis

356

Amino Acids

41.36

Weight (kDa)

4.32

Isoelectric Point (pI)

69.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCD97-like_C PF09747 107 - 328 7.8e-54 Coiled-coil domain containing protein 97-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 158, 236
AccBSI CCGCTC 1 cut(s) 469
AccII CGCG 2 cut(s) 84, 150
AccIII TCCGGA 1 cut(s) 748
AciI CCGC 2 cut(s) 148, 469
AclI AACGTT 1 cut(s) 172
AclWI GGATC 5 cut(s) 187, 428, 441, 701, 714
AcsI RAATTY 1 cut(s) 863
AcuI CTGAAG 1 cut(s) 984
AcyI GRCGYC 1 cut(s) 59
AfaI GTAC 3 cut(s) 890, 974, 1055
AfiI CCNNNNNNNGG 1 cut(s) 783
AgsI TTSAA 3 cut(s) 295, 311, 381
AjnI CCWGG 3 cut(s) 204, 460, 585
AluBI AGCT 2 cut(s) 202, 243
AluI AGCT 2 cut(s) 202, 243
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 2 cut(s) 914, 995
AlwI GGATC 5 cut(s) 187, 428, 441, 701, 714
Aor13HI TCCGGA 1 cut(s) 748
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 863
AspLEI GCGC 5 cut(s) 86, 120, 220, 721, 757
AspS9I GGNCC 2 cut(s) 67, 835
AsuHPI GGTGA 4 cut(s) 97, 835, 887, 1007
AvaII GGWCC 2 cut(s) 67, 835
BaeGI GKGCMC 1 cut(s) 683
BamHI GGATCC 2 cut(s) 433, 706
BanII GRGCYC 2 cut(s) 204, 399
BauI CACGAG 1 cut(s) 884
BbsI GAAGAC 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 142
BccI CCATC 4 cut(s) 110, 350, 753, 826
BceAI ACGGC 1 cut(s) 143
BciT130I CCWGG 3 cut(s) 206, 462, 587
BclI TGATCA 2 cut(s) 931, 1012
BcoDI GTCTC 2 cut(s) 914, 995
BfmI CTRYAG 2 cut(s) 738, 810
BglII AGATCT 1 cut(s) 826
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BmcAI AGTACT 3 cut(s) 890, 974, 1055
Bme1390I CCNGG 3 cut(s) 206, 462, 587
Bme18I GGWCC 2 cut(s) 67, 835
BmgT120I GGNCC 2 cut(s) 67, 835
BmiI GGNNCC 2 cut(s) 435, 708
BmrFI CCNGG 3 cut(s) 206, 462, 587
BmsI GCATC 5 cut(s) 205, 265, 415, 706, 742
BpiI GAAGAC 1 cut(s) 154
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 753
BsaHI GRCGYC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 461
BsaWI WCCGGW 1 cut(s) 748
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 1 cut(s) 783
Bse118I RCCGGY 1 cut(s) 1017
Bse1I ACTGG 2 cut(s) 838, 941
BseAI TCCGGA 1 cut(s) 748
BseBI CCWGG 3 cut(s) 206, 462, 587
BseDI CCNNGG 1 cut(s) 461
BseGI GGATG 6 cut(s) 292, 721, 745, 757, 934, 1015
BseLI CCNNNNNNNGG 1 cut(s) 783
BseMII CTCAG 3 cut(s) 128, 186, 546
BseNI ACTGG 2 cut(s) 838, 941
BseRI GAGGAG 9 cut(s) 122, 212, 505, 620, 635, 656, 659, 662, 665
BseSI GKGCMC 1 cut(s) 683
BseXI GCAGC 1 cut(s) 142
Bsh1236I CGCG 2 cut(s) 84, 150
BshFI GGCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 2 cut(s) 749, 1018
BslI CCNNNNNNNGG 1 cut(s) 783
BsmAI GTCTC 2 cut(s) 914, 995
BsnI GGCC 1 cut(s) 125
Bsp1286I GDGCHC 3 cut(s) 204, 399, 683
Bsp13I TCCGGA 1 cut(s) 748
Bsp143I GATC 7 cut(s) 179, 433, 706, 826, 880, 931, 1012
BspACI CCGC 2 cut(s) 148, 469
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 3 cut(s) 127, 187, 547
BspEI TCCGGA 1 cut(s) 748
BspFNI CGCG 2 cut(s) 84, 150
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 2 cut(s) 435, 708
BspMAI CTGCAG 1 cut(s) 742
BspPI GGATC 5 cut(s) 187, 428, 441, 701, 714
BsrBI CCGCTC 1 cut(s) 469
BsrFI RCCGGY 1 cut(s) 1017
BsrI ACTGG 2 cut(s) 838, 941
BssAI RCCGGY 1 cut(s) 1017
BssECI CCNNGG 1 cut(s) 461
BssMI GATC 7 cut(s) 179, 433, 706, 826, 880, 931, 1012
BssNI GRCGYC 1 cut(s) 59
BssSI CACGAG 1 cut(s) 884
Bst2BI CACGAG 1 cut(s) 884
Bst2UI CCWGG 3 cut(s) 206, 462, 587
Bst4CI ACNGT 1 cut(s) 805
Bst6I CTCTTC 5 cut(s) 612, 621, 633, 810, 960
BstACI GRCGYC 1 cut(s) 59
BstC8I GCNNGC 3 cut(s) 245, 330, 798
BstDEI CTNAG 6 cut(s) 114, 166, 195, 260, 555, 892
BstF5I GGATG 6 cut(s) 292, 721, 745, 757, 934, 1015
BstFNI CGCG 2 cut(s) 84, 150
BstHHI GCGC 5 cut(s) 86, 120, 220, 721, 757
BstKTI GATC 7 cut(s) 182, 436, 709, 829, 883, 934, 1015
BstMAI GTCTC 2 cut(s) 914, 995
BstMBI GATC 7 cut(s) 179, 433, 706, 826, 880, 931, 1012
BstMWI GCNNNNNNNGC 5 cut(s) 253, 403, 737, 779, 793
BstNI CCWGG 3 cut(s) 206, 462, 587
BstNSI RCATGY 1 cut(s) 251
BstSCI CCNGG 3 cut(s) 204, 460, 585
BstSFI CTRYAG 2 cut(s) 738, 810
BstSLI GKGCMC 1 cut(s) 683
BstUI CGCG 2 cut(s) 84, 150
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 154
BstX2I RGATCY 3 cut(s) 433, 706, 826
BstYI RGATCY 3 cut(s) 433, 706, 826
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 6 cut(s) 292, 721, 745, 757, 934, 1015
BtsIMutI CAGTG 1 cut(s) 934
Cac8I GCNNGC 3 cut(s) 245, 330, 798
CciI TCATGA 1 cut(s) 409
CfoI GCGC 5 cut(s) 86, 120, 220, 721, 757
Cfr10I RCCGGY 1 cut(s) 1017
Cfr13I GGNCC 2 cut(s) 67, 835
CseI GACGC 4 cut(s) 48, 161, 968, 1049
Csp6I GTAC 3 cut(s) 889, 973, 1054
CviAII CATG 7 cut(s) 248, 410, 451, 853, 857, 956, 1037
CviJI RGCY 8 cut(s) 52, 125, 202, 243, 332, 397, 671, 950
CviKI_1 RGCY 8 cut(s) 52, 125, 202, 243, 332, 397, 671, 950
CviQI GTAC 3 cut(s) 889, 973, 1054
DdeI CTNAG 6 cut(s) 114, 166, 195, 260, 555, 892
DpnI GATC 7 cut(s) 181, 435, 708, 828, 882, 933, 1014
DpnII GATC 7 cut(s) 179, 433, 706, 826, 880, 931, 1012
DrdI GACNNNNNNGTC 2 cut(s) 158, 236
DseDI GACNNNNNNGTC 2 cut(s) 158, 236
Eam1104I CTCTTC 5 cut(s) 612, 621, 633, 810, 960
EarI CTCTTC 5 cut(s) 612, 621, 633, 810, 960
Ecl136II GAGCTC 1 cut(s) 202
Eco24I GRGCYC 2 cut(s) 204, 399
Eco47I GGWCC 2 cut(s) 67, 835
Eco53kI GAGCTC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 984
EcoICRI GAGCTC 1 cut(s) 202
EcoO109I RGGNCCY 1 cut(s) 67
EcoRII CCWGG 3 cut(s) 204, 460, 585
EcoT22I ATGCAT 1 cut(s) 858
EcoT38I GRGCYC 2 cut(s) 204, 399
FaeI CATG 7 cut(s) 251, 413, 454, 856, 860, 959, 1040
FatI CATG 7 cut(s) 247, 409, 450, 852, 856, 955, 1036
FauI CCCGC 1 cut(s) 155
FbaI TGATCA 2 cut(s) 931, 1012
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 6 cut(s) 299, 728, 732, 764, 941, 1022
FriOI GRGCYC 2 cut(s) 204, 399
Fsp4HI GCNGC 1 cut(s) 156
GlaI GCGC 5 cut(s) 85, 119, 219, 720, 756
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 1 cut(s) 125
HapII CCGG 2 cut(s) 749, 1018
HgaI GACGC 4 cut(s) 48, 161, 968, 1049
HhaI GCGC 5 cut(s) 86, 120, 220, 721, 757
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 7 cut(s) 251, 413, 454, 856, 860, 959, 1040
Hin6I GCGC 5 cut(s) 84, 118, 218, 719, 755
HinP1I GCGC 5 cut(s) 84, 118, 218, 719, 755
HinfI GANTC 4 cut(s) 274, 377, 582, 659
HpaII CCGG 2 cut(s) 749, 1018
HphI GGTGA 4 cut(s) 97, 835, 887, 1007
Hpy166II GTNNAC 2 cut(s) 843, 1033
Hpy188III TCNNGA 6 cut(s) 300, 410, 431, 713, 749, 884
Hpy8I GTNNAC 2 cut(s) 843, 1033
Hpy99I CGWCG 3 cut(s) 64, 155, 920
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 1 cut(s) 805
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 5 cut(s) 91, 406, 740, 823, 856
HpyF10VI GCNNNNNNNGC 5 cut(s) 253, 403, 737, 779, 793
HpyF3I CTNAG 6 cut(s) 114, 166, 195, 260, 555, 892
HpySE526I ACGT 1 cut(s) 172
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 7 cut(s) 251, 413, 454, 856, 860, 959, 1040
HspAI GCGC 5 cut(s) 84, 118, 218, 719, 755
Kpn2I TCCGGA 1 cut(s) 748
Ksp22I TGATCA 2 cut(s) 931, 1012
Kzo9I GATC 7 cut(s) 179, 433, 706, 826, 880, 931, 1012
LmnI GCTCC 5 cut(s) 199, 207, 447, 466, 532
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 5 cut(s) 205, 265, 415, 706, 742
MaeII ACGT 1 cut(s) 172
MalI GATC 7 cut(s) 181, 435, 708, 828, 882, 933, 1014
MbiI CCGCTC 1 cut(s) 469
MboI GATC 7 cut(s) 179, 433, 706, 826, 880, 931, 1012
MflI RGATCY 3 cut(s) 433, 706, 826
MhlI GDGCHC 3 cut(s) 204, 399, 683
MluCI AATT 4 cut(s) 185, 290, 344, 863
MlyI GAGTC 1 cut(s) 283
MmeI TCCRAC 2 cut(s) 42, 302
Mph1103I ATGCAT 1 cut(s) 858
MroI TCCGGA 1 cut(s) 748
MseI TTAA 2 cut(s) 188, 1069
MslI CAYNNNNRTG 2 cut(s) 414, 750
MspA1I CMGCKG 1 cut(s) 243
MspI CCGG 2 cut(s) 749, 1018
MspR9I CCNGG 3 cut(s) 206, 462, 587
MvaI CCWGG 3 cut(s) 206, 462, 587
MvnI CGCG 2 cut(s) 84, 150
MwoI GCNNNNNNNGC 5 cut(s) 253, 403, 737, 779, 793
NdeII GATC 7 cut(s) 179, 433, 706, 826, 880, 931, 1012
NlaIII CATG 7 cut(s) 251, 413, 454, 856, 860, 959, 1040
NlaIV GGNNCC 2 cut(s) 435, 708
NsiI ATGCAT 1 cut(s) 858
NspI RCATGY 1 cut(s) 251
PagI TCATGA 1 cut(s) 409
PfeI GAWTC 3 cut(s) 377, 582, 659
PfoI TCCNGGA 2 cut(s) 204, 585
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
PpuMI RGGWCCY 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 204
Psp1406I AACGTT 1 cut(s) 172
Psp5II RGGWCCY 1 cut(s) 67
Psp6I CCWGG 3 cut(s) 204, 460, 585
PspGI CCWGG 3 cut(s) 204, 460, 585
PspN4I GGNNCC 2 cut(s) 435, 708
PspPI GGNCC 2 cut(s) 67, 835
PspPPI RGGWCCY 1 cut(s) 67
PstI CTGCAG 1 cut(s) 742
PsuI RGATCY 3 cut(s) 433, 706, 826
PvuII CAGCTG 1 cut(s) 243
RsaI GTAC 3 cut(s) 890, 974, 1055
RsaNI GTAC 3 cut(s) 889, 973, 1054
RseI CAYNNNNRTG 2 cut(s) 414, 750
SacI GAGCTC 1 cut(s) 204
SaqAI TTAA 2 cut(s) 188, 1069
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 7 cut(s) 179, 433, 706, 826, 880, 931, 1012
Sau96I GGNCC 2 cut(s) 67, 835
ScaI AGTACT 3 cut(s) 890, 974, 1055
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 3 cut(s) 206, 462, 587
SduI GDGCHC 3 cut(s) 204, 399, 683
SfaNI GCATC 5 cut(s) 205, 265, 415, 706, 742
SfcI CTRYAG 2 cut(s) 738, 810
SinI GGWCC 2 cut(s) 67, 835
SmiMI CAYNNNNRTG 2 cut(s) 414, 750
SmlI CTYRAG 1 cut(s) 768
SmoI CTYRAG 1 cut(s) 768
Sse9I AATT 4 cut(s) 185, 290, 344, 863
SsiI CCGC 2 cut(s) 148, 469
SstI GAGCTC 1 cut(s) 204
StyD4I CCNGG 3 cut(s) 204, 460, 585
TaaI ACNGT 1 cut(s) 805
TaiI ACGT 1 cut(s) 175
TaqI TCGA 1 cut(s) 135
TasI AATT 4 cut(s) 185, 290, 344, 863
TatI WGTACW 3 cut(s) 888, 972, 1053
TfiI GAWTC 3 cut(s) 377, 582, 659
Tru1I TTAA 2 cut(s) 188, 1069
Tru9I TTAA 2 cut(s) 188, 1069
TscAI CASTG 1 cut(s) 941
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 249, 303
TspRI CASTG 1 cut(s) 941
VpaK11BI GGWCC 2 cut(s) 67, 835
XapI RAATTY 1 cut(s) 863
XceI RCATGY 1 cut(s) 251
ZrmI AGTACT 3 cut(s) 890, 974, 1055
Zsp2I ATGCAT 1 cut(s) 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.