Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003652.1

Orthogroup ID

OG0006653

Physical Location & Seq

Genomic Coordinates Forward (+)

81854 .. 83975

Gene Structure 2122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003652.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atggagacgaaggtagtgagaagcgaagcgatagagagcatatcggacaggctatcagcgtcggaggacctctacttccctcgcgccctgcaatccaccaccatcaccccctctcagcgcaaggccattctcctcgacctcctatcccgcgacgctgccgtcttcttagaacgttatggatcgaaattaacatctgaggagctcctggagtttgatgcgctgacagatgactatgaagtcagctggcatgtgaagcatcttagaagtttattgagtccgacatcggatgaattgaaatcaagggcagttcaagtgaagaacaggaggcgagcctacctgaataagttgatatttgatgggcagtatttctcggaggattcaatgagggagagagagccctacttgcatcatgagtatgtggggaagtttcaggatccgagtggtaggagcatggcaagacctggggagcggtggtcagatactttgttgaggaggtcagaggaagcgattttggtagcaaagattagaggggagcaacagaggttgggtgttgctgagagtgattgggttggcggtgagagaatccaggaagtagaggaacaggaggaggaagaagaagaggaggaagaggaagaggaagaggaagaagaagaggaggaggaggaggaggaagaatctaacgaggctaatgggggcacacaatcatcagagatgctggtagatcctcctaatgtggccagtggtgctgaaactgcagaccatccggatgcgcccaatgttgctcaagcaaccacagcagggcagagtgagcaagcaactgtatctgcagaagagttgcaagatctgatggaccagttcacctacatcatgcatgagaaatttttgttaggtgaagatcacgagtacttagattactcaaagatagacaacgacgagacattggatgatcactggcagagagaagccaaccatgacgctgaagagaagtactttgatgacattattgatgaggacgagacattggatgatcacccgcacagagaagtgaaccatgacgctgaagagaagtactttgatgaggattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2052

Protein Analysis

361

Amino Acids

41.8

Weight (kDa)

4.29

Isoelectric Point (pI)

73.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47090 AT5G47090
fragaria_vesca	FvH4_5g20690 FvH4_5g20690
malus_domestica	MD04G1054200.v1.1
prunus_persica	Prupe.5G053300_v2.0.a1 Prupe.5G053300_v2.0.a1
pyrus_communis	pycom04g04730
rosa_chinensis	RchiOBHm_Chr7g0206421
rosa_laevigata	RLG00000003313
rosa_multiflora	Rmu_sc0003652.1_g000021 Rmu_sc0005065.1_g000026
rosa_roxburghii	Rroxscaffold_3G00251530
rosa_rugosa	Rorug07G0097400
rosa_samantha	Rh1AG232100 Rh1BG376000 Rh1CG216900 Rh1CG389800 Rh1DG406600 Rh3BG038900 Rh5AG411300 Rh7AG229000 Rh7BG225500 Rh7CG243600 Rh7DG236000
rosa_wichuraiana	Rw7G019710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	158, 236
AccBSI	CCGCTC	1 cut(s)	469
AccII	CGCG	2 cut(s)	84, 150
AccIII	TCCGGA	1 cut(s)	763
AciI	CCGC	4 cut(s)	148, 469, 573, 1034
AclI	AACGTT	1 cut(s)	172
AclWI	GGATC	4 cut(s)	187, 428, 441, 716
AcoI	YGGCCR	1 cut(s)	735
AcsI	RAATTY	1 cut(s)	878
AcuI	CTGAAG	2 cut(s)	999, 1080
AfaI	GTAC	3 cut(s)	905, 989, 1070
AfiI	CCNNNNNNNGG	1 cut(s)	798
AgsI	TTSAA	3 cut(s)	295, 311, 381
AjnI	CCWGG	3 cut(s)	204, 460, 585
AluBI	AGCT	2 cut(s)	202, 243
AluI	AGCT	2 cut(s)	202, 243
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	2 cut(s)	929, 1010
AlwI	GGATC	4 cut(s)	187, 428, 441, 716
Aor13HI	TCCGGA	1 cut(s)	763
AoxI	GGCC	2 cut(s)	123, 735
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	878
AspLEI	GCGC	4 cut(s)	86, 120, 220, 772
AspS9I	GGNCC	2 cut(s)	67, 850
AsuHPI	GGTGA	5 cut(s)	97, 587, 850, 902, 1022
AvaII	GGWCC	2 cut(s)	67, 850
BaeGI	GKGCMC	1 cut(s)	698
BalI	TGGCCA	1 cut(s)	737
BamHI	GGATCC	1 cut(s)	433
BanII	GRGCYC	2 cut(s)	204, 399
BauI	CACGAG	1 cut(s)	899
BbsI	GAAGAC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	4 cut(s)	110, 350, 768, 841
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	3 cut(s)	206, 462, 587
BclI	TGATCA	2 cut(s)	946, 1027
BcoDI	GTCTC	2 cut(s)	929, 1010
BfmI	CTRYAG	2 cut(s)	753, 825
BglII	AGATCT	1 cut(s)	841
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
BmcAI	AGTACT	3 cut(s)	905, 989, 1070
Bme1390I	CCNGG	3 cut(s)	206, 462, 587
Bme18I	GGWCC	2 cut(s)	67, 850
BmgT120I	GGNCC	2 cut(s)	67, 850
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	3 cut(s)	206, 462, 587
BmsI	GCATC	5 cut(s)	205, 265, 415, 702, 757
BpiI	GAAGAC	1 cut(s)	154
BpmI	CTGGAG	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	768
BsaJI	CCNNGG	1 cut(s)	461
BsaWI	WCCGGW	1 cut(s)	763
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	1 cut(s)	798
Bse1I	ACTGG	3 cut(s)	738, 853, 956
BseAI	TCCGGA	1 cut(s)	763
BseBI	CCWGG	3 cut(s)	206, 462, 587
BseDI	CCNNGG	1 cut(s)	461
BseGI	GGATG	5 cut(s)	292, 760, 772, 949, 1030
BseLI	CCNNNNNNNGG	1 cut(s)	798
BseMII	CTCAG	3 cut(s)	128, 186, 546
BseNI	ACTGG	3 cut(s)	738, 853, 956
BseSI	GKGCMC	1 cut(s)	698
BseXI	GCAGC	1 cut(s)	142
Bsh1236I	CGCG	2 cut(s)	84, 150
BshFI	GGCC	2 cut(s)	125, 737
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	764
BslI	CCNNNNNNNGG	1 cut(s)	798
BsmAI	GTCTC	2 cut(s)	929, 1010
BsnI	GGCC	2 cut(s)	125, 737
Bsp1286I	GDGCHC	3 cut(s)	204, 399, 698
Bsp13I	TCCGGA	1 cut(s)	763
Bsp143I	GATC	7 cut(s)	179, 433, 721, 841, 895, 946, 1027
BspACI	CCGC	4 cut(s)	148, 469, 573, 1034
BspANI	GGCC	2 cut(s)	125, 737
BspCNI	CTCAG	3 cut(s)	127, 187, 547
BspEI	TCCGGA	1 cut(s)	763
BspFNI	CGCG	2 cut(s)	84, 150
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	435
BspMAI	CTGCAG	2 cut(s)	757, 829
BspPI	GGATC	4 cut(s)	187, 428, 441, 716
BsrBI	CCGCTC	1 cut(s)	469
BsrI	ACTGG	3 cut(s)	738, 853, 956
BssECI	CCNNGG	1 cut(s)	461
BssMI	GATC	7 cut(s)	179, 433, 721, 841, 895, 946, 1027
BssSI	CACGAG	1 cut(s)	899
Bst2BI	CACGAG	1 cut(s)	899
Bst2UI	CCWGG	3 cut(s)	206, 462, 587
Bst4CI	ACNGT	1 cut(s)	820
Bst6I	CTCTTC	8 cut(s)	612, 621, 627, 633, 645, 825, 975, 1056
BstC8I	GCNNGC	3 cut(s)	245, 330, 813
BstDEI	CTNAG	6 cut(s)	114, 166, 195, 260, 555, 907
BstF5I	GGATG	5 cut(s)	292, 760, 772, 949, 1030
BstFNI	CGCG	2 cut(s)	84, 150
BstHHI	GCGC	4 cut(s)	86, 120, 220, 772
BstKTI	GATC	7 cut(s)	182, 436, 724, 844, 898, 949, 1030
BstMAI	GTCTC	2 cut(s)	929, 1010
BstMBI	GATC	7 cut(s)	179, 433, 721, 841, 895, 946, 1027
BstMWI	GCNNNNNNNGC	6 cut(s)	253, 403, 743, 752, 794, 808
BstNI	CCWGG	3 cut(s)	206, 462, 587
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	3 cut(s)	204, 460, 585
BstSFI	CTRYAG	2 cut(s)	753, 825
BstSLI	GKGCMC	1 cut(s)	698
BstUI	CGCG	2 cut(s)	84, 150
BstV1I	GCAGC	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	154
BstX2I	RGATCY	3 cut(s)	433, 721, 841
BstYI	RGATCY	3 cut(s)	433, 721, 841
BsuRI	GGCC	2 cut(s)	125, 737
BtsCI	GGATG	5 cut(s)	292, 760, 772, 949, 1030
BtsIMutI	CAGTG	2 cut(s)	745, 949
Cac8I	GCNNGC	3 cut(s)	245, 330, 813
CciI	TCATGA	1 cut(s)	409
CfoI	GCGC	4 cut(s)	86, 120, 220, 772
Cfr13I	GGNCC	2 cut(s)	67, 850
CseI	GACGC	4 cut(s)	48, 161, 983, 1064
Csp6I	GTAC	3 cut(s)	904, 988, 1069
CviAII	CATG	7 cut(s)	248, 410, 451, 868, 872, 971, 1052
CviJI	RGCY	9 cut(s)	52, 125, 202, 243, 332, 397, 686, 737, 965
CviKI_1	RGCY	9 cut(s)	52, 125, 202, 243, 332, 397, 686, 737, 965
CviQI	GTAC	3 cut(s)	904, 988, 1069
DdeI	CTNAG	6 cut(s)	114, 166, 195, 260, 555, 907
DpnI	GATC	7 cut(s)	181, 435, 723, 843, 897, 948, 1029
DpnII	GATC	7 cut(s)	179, 433, 721, 841, 895, 946, 1027
DrdI	GACNNNNNNGTC	2 cut(s)	158, 236
DseDI	GACNNNNNNGTC	2 cut(s)	158, 236
EaeI	YGGCCR	1 cut(s)	735
Eam1104I	CTCTTC	8 cut(s)	612, 621, 627, 633, 645, 825, 975, 1056
EarI	CTCTTC	8 cut(s)	612, 621, 627, 633, 645, 825, 975, 1056
Ecl136II	GAGCTC	1 cut(s)	202
Eco24I	GRGCYC	2 cut(s)	204, 399
Eco47I	GGWCC	2 cut(s)	67, 850
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	2 cut(s)	999, 1080
EcoICRI	GAGCTC	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	3 cut(s)	204, 460, 585
EcoT22I	ATGCAT	1 cut(s)	873
EcoT38I	GRGCYC	2 cut(s)	204, 399
FaeI	CATG	7 cut(s)	251, 413, 454, 871, 875, 974, 1055
FatI	CATG	7 cut(s)	247, 409, 450, 867, 871, 970, 1051
FauI	CCCGC	2 cut(s)	155, 1041
FbaI	TGATCA	2 cut(s)	946, 1027
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	5 cut(s)	299, 747, 779, 956, 1037
FriOI	GRGCYC	2 cut(s)	204, 399
Fsp4HI	GCNGC	1 cut(s)	156
GlaI	GCGC	4 cut(s)	85, 119, 219, 771
GluI	GCNGC	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	125, 737
HapII	CCGG	1 cut(s)	764
HgaI	GACGC	4 cut(s)	48, 161, 983, 1064
HhaI	GCGC	4 cut(s)	86, 120, 220, 772
Hin1II	CATG	7 cut(s)	251, 413, 454, 871, 875, 974, 1055
Hin6I	GCGC	4 cut(s)	84, 118, 218, 770
HinP1I	GCGC	4 cut(s)	84, 118, 218, 770
HinfI	GANTC	4 cut(s)	274, 377, 582, 674
HpaII	CCGG	1 cut(s)	764
HphI	GGTGA	5 cut(s)	97, 587, 850, 902, 1022
Hpy166II	GTNNAC	2 cut(s)	858, 1048
Hpy188III	TCNNGA	4 cut(s)	410, 431, 764, 899
Hpy8I	GTNNAC	2 cut(s)	858, 1048
Hpy99I	CGWCG	3 cut(s)	64, 155, 935
HpyAV	CCTTC	1 cut(s)	4
HpyCH4III	ACNGT	1 cut(s)	820
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	6 cut(s)	91, 406, 755, 827, 838, 871
HpyF10VI	GCNNNNNNNGC	6 cut(s)	253, 403, 743, 752, 794, 808
HpyF3I	CTNAG	6 cut(s)	114, 166, 195, 260, 555, 907
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	7 cut(s)	251, 413, 454, 871, 875, 974, 1055
HspAI	GCGC	4 cut(s)	84, 118, 218, 770
Kpn2I	TCCGGA	1 cut(s)	763
Ksp22I	TGATCA	2 cut(s)	946, 1027
Kzo9I	GATC	7 cut(s)	179, 433, 721, 841, 895, 946, 1027
LmnI	GCTCC	5 cut(s)	199, 207, 447, 466, 532
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	5 cut(s)	205, 265, 415, 702, 757
MaeII	ACGT	1 cut(s)	172
MalI	GATC	7 cut(s)	181, 435, 723, 843, 897, 948, 1029
MbiI	CCGCTC	1 cut(s)	469
MboI	GATC	7 cut(s)	179, 433, 721, 841, 895, 946, 1027
MflI	RGATCY	3 cut(s)	433, 721, 841
MhlI	GDGCHC	3 cut(s)	204, 399, 698
MlsI	TGGCCA	1 cut(s)	737
MluCI	AATT	3 cut(s)	185, 290, 878
MluNI	TGGCCA	1 cut(s)	737
MlyI	GAGTC	1 cut(s)	283
MmeI	TCCRAC	2 cut(s)	42, 302
Mox20I	TGGCCA	1 cut(s)	737
Mph1103I	ATGCAT	1 cut(s)	873
MroI	TCCGGA	1 cut(s)	763
MscI	TGGCCA	1 cut(s)	737
MseI	TTAA	2 cut(s)	188, 1084
MslI	CAYNNNNRTG	2 cut(s)	414, 765
Msp20I	TGGCCA	1 cut(s)	737
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	1 cut(s)	764
MspR9I	CCNGG	3 cut(s)	206, 462, 587
MvaI	CCWGG	3 cut(s)	206, 462, 587
MvnI	CGCG	2 cut(s)	84, 150
MwoI	GCNNNNNNNGC	6 cut(s)	253, 403, 743, 752, 794, 808
NdeII	GATC	7 cut(s)	179, 433, 721, 841, 895, 946, 1027
NlaIII	CATG	7 cut(s)	251, 413, 454, 871, 875, 974, 1055
NlaIV	GGNNCC	1 cut(s)	435
NsiI	ATGCAT	1 cut(s)	873
NspI	RCATGY	1 cut(s)	251
PagI	TCATGA	1 cut(s)	409
PfeI	GAWTC	3 cut(s)	377, 582, 674
PfoI	TCCNGGA	2 cut(s)	204, 585
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
PpuMI	RGGWCCY	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	204
Psp1406I	AACGTT	1 cut(s)	172
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	3 cut(s)	204, 460, 585
PspGI	CCWGG	3 cut(s)	204, 460, 585
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	2 cut(s)	67, 850
PspPPI	RGGWCCY	1 cut(s)	67
PstI	CTGCAG	2 cut(s)	757, 829
PsuI	RGATCY	3 cut(s)	433, 721, 841
PvuII	CAGCTG	1 cut(s)	243
RsaI	GTAC	3 cut(s)	905, 989, 1070
RsaNI	GTAC	3 cut(s)	904, 988, 1069
RseI	CAYNNNNRTG	2 cut(s)	414, 765
SacI	GAGCTC	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	188, 1084
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	7 cut(s)	179, 433, 721, 841, 895, 946, 1027
Sau96I	GGNCC	2 cut(s)	67, 850
ScaI	AGTACT	3 cut(s)	905, 989, 1070
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	3 cut(s)	206, 462, 587
SduI	GDGCHC	3 cut(s)	204, 399, 698
SfaNI	GCATC	5 cut(s)	205, 265, 415, 702, 757
SfcI	CTRYAG	2 cut(s)	753, 825
SinI	GGWCC	2 cut(s)	67, 850
SmiMI	CAYNNNNRTG	2 cut(s)	414, 765
SmlI	CTYRAG	1 cut(s)	783
SmoI	CTYRAG	1 cut(s)	783
Sse9I	AATT	3 cut(s)	185, 290, 878
SsiI	CCGC	4 cut(s)	148, 469, 573, 1034
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	3 cut(s)	204, 460, 585
TaaI	ACNGT	1 cut(s)	820
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	2 cut(s)	135, 182
TasI	AATT	3 cut(s)	185, 290, 878
TatI	WGTACW	3 cut(s)	903, 987, 1068
TfiI	GAWTC	3 cut(s)	377, 582, 674
Tru1I	TTAA	2 cut(s)	188, 1084
Tru9I	TTAA	2 cut(s)	188, 1084
TscAI	CASTG	2 cut(s)	745, 956
TseI	GCWGC	1 cut(s)	155
TspDTI	ATGAA	2 cut(s)	249, 303
TspRI	CASTG	2 cut(s)	745, 956
VpaK11BI	GGWCC	2 cut(s)	67, 850
XapI	RAATTY	1 cut(s)	878
XceI	RCATGY	1 cut(s)	251
ZrmI	AGTACT	3 cut(s)	905, 989, 1070
Zsp2I	ATGCAT	1 cut(s)	873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.