Rh5AG411300

Coiled-coil domain containing protein (DUF2052)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0006653
Physical Location & Seq
Reverse (-)
71076672 .. 71080269
3598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG411300.1

Sequence Viewer

Length: 477 bp
ATGTATTTTATGCCTTTCAATAAACGTTATGGATCGAAATTAACATCTGAGGAGCTCCTGGAGTTTGATGCGCTGACAGATGACTATGAAGTCAGCTGGCATGTGAAGCATCTTAGAAGTTTATTGAGTCCGACATCGGATGAATTGAAATCCAGGGCAGTTCAAGTGATGAACCGGAGGCGAGCCTACCTGAATAAGTTCCGAGTTGTAGGAGCACGGCAAGACCTGGGGAGCGGTGAGGAAGCGATTTTGGTAGCAAAGATTAGAGGGGAGCAACAGAGGTTGGGTGTTGCTGAGAGTGATTGGGTTGGCGGAGAAGATCACGAGTACTTAGATTACTCAAAGATAGACAATGACCAGACATTGGATGATCACTGGCAGAGAGAAGCCAACCATGACGCTGAAGAGAACAGCCTCCGGAACTTAACCGAGGAAGACTACTTCATGTTCAGAGAAAGGCGTGCACCAAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2052

Protein Analysis

158

Amino Acids

18.65

Weight (kDa)

5.3

Isoelectric Point (pI)

57.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCD97-like_C PF09747 99 - 136 2.3e-06 Coiled-coil domain containing protein 97-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
AccB7I CCANNNNNTGG 1 cut(s) 364
AccBSI CCGCTC 1 cut(s) 234
AccIII TCCGGA 1 cut(s) 417
AciI CCGC 2 cut(s) 234, 312
AclI AACGTT 1 cut(s) 25
AclWI GGATC 1 cut(s) 40
AcuI CTGAAG 1 cut(s) 423
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 364
AgsI TTSAA 3 cut(s) 19, 148, 164
AjnI CCWGG 3 cut(s) 57, 152, 225
AluBI AGCT 2 cut(s) 55, 96
AluI AGCT 2 cut(s) 55, 96
Alw21I GWGCWC 3 cut(s) 57, 217, 466
Alw44I GTGCAC 1 cut(s) 462
AlwI GGATC 1 cut(s) 40
Aor13HI TCCGGA 1 cut(s) 417
ApaLI GTGCAC 1 cut(s) 462
Asp700I GAANNNNTTC 1 cut(s) 197
AspLEI GCGC 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 248
BaeGI GKGCMC 1 cut(s) 466
BanII GRGCYC 1 cut(s) 57
BauI CACGAG 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 441
Bbv12I GWGCWC 3 cut(s) 57, 217, 466
BceAI ACGGC 1 cut(s) 233
BciT130I CCWGG 3 cut(s) 59, 154, 227
BclI TGATCA 1 cut(s) 370
BmcAI AGTACT 1 cut(s) 329
Bme1390I CCNGG 3 cut(s) 59, 154, 227
BmrFI CCNGG 3 cut(s) 59, 154, 227
BmsI GCATC 2 cut(s) 58, 118
BpiI GAAGAC 1 cut(s) 441
BpmI CTGGAG 1 cut(s) 80
BsaJI CCNNGG 3 cut(s) 153, 226, 429
BsaWI WCCGGW 2 cut(s) 174, 417
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 380
BseAI TCCGGA 1 cut(s) 417
BseBI CCWGG 3 cut(s) 59, 154, 227
BseDI CCNNGG 3 cut(s) 153, 226, 429
BseGI GGATG 2 cut(s) 145, 373
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMII CTCAG 2 cut(s) 39, 285
BseNI ACTGG 1 cut(s) 380
BseRI GAGGAG 1 cut(s) 65
BseSI GKGCMC 1 cut(s) 466
BsiHKAI GWGCWC 3 cut(s) 57, 217, 466
BsiSI CCGG 2 cut(s) 175, 418
BslI CCNNNNNNNGG 1 cut(s) 364
Bsp1286I GDGCHC 3 cut(s) 57, 217, 466
Bsp13I TCCGGA 1 cut(s) 417
Bsp143I GATC 3 cut(s) 32, 319, 370
BspACI CCGC 2 cut(s) 234, 312
BspCNI CTCAG 2 cut(s) 40, 286
BspEI TCCGGA 1 cut(s) 417
BspPI GGATC 1 cut(s) 40
BsrBI CCGCTC 1 cut(s) 234
BsrI ACTGG 1 cut(s) 380
BssECI CCNNGG 3 cut(s) 153, 226, 429
BssMI GATC 3 cut(s) 32, 319, 370
BssSI CACGAG 1 cut(s) 323
Bst2BI CACGAG 1 cut(s) 323
Bst2UI CCWGG 3 cut(s) 59, 154, 227
Bst6I CTCTTC 1 cut(s) 399
BstC8I GCNNGC 3 cut(s) 98, 183, 462
BstDEI CTNAG 4 cut(s) 48, 113, 294, 331
BstF5I GGATG 2 cut(s) 145, 373
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 3 cut(s) 35, 322, 373
BstMBI GATC 3 cut(s) 32, 319, 370
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNI CCWGG 3 cut(s) 59, 154, 227
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 3 cut(s) 57, 152, 225
BstSLI GKGCMC 1 cut(s) 466
BstV2I GAAGAC 1 cut(s) 441
BtsCI GGATG 2 cut(s) 145, 373
BtsIMutI CAGTG 1 cut(s) 373
Cac8I GCNNGC 3 cut(s) 98, 183, 462
CfoI GCGC 1 cut(s) 73
CseI GACGC 1 cut(s) 407
Csp6I GTAC 1 cut(s) 328
CviAII CATG 3 cut(s) 101, 395, 445
CviJI RGCY 5 cut(s) 55, 96, 185, 389, 414
CviKI_1 RGCY 5 cut(s) 55, 96, 185, 389, 414
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 4 cut(s) 48, 113, 294, 331
DpnI GATC 3 cut(s) 34, 321, 372
DpnII GATC 3 cut(s) 32, 319, 370
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
EciI GGCGGA 1 cut(s) 327
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 423
EcoICRI GAGCTC 1 cut(s) 55
EcoRII CCWGG 3 cut(s) 57, 152, 225
EcoT38I GRGCYC 1 cut(s) 57
FaeI CATG 3 cut(s) 104, 398, 448
FaiI YATR 6 cut(s) 11, 30, 87, 102, 396, 446
FatI CATG 3 cut(s) 100, 394, 444
FbaI TGATCA 1 cut(s) 370
FokI GGATG 2 cut(s) 152, 380
FriOI GRGCYC 1 cut(s) 57
GlaI GCGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 80
HapII CCGG 2 cut(s) 175, 418
HgaI GACGC 1 cut(s) 407
HhaI GCGC 1 cut(s) 73
Hin1II CATG 3 cut(s) 104, 398, 448
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 1 cut(s) 127
HpaII CCGG 2 cut(s) 175, 418
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 1 cut(s) 464
Hpy188I TCNGA 5 cut(s) 49, 132, 139, 203, 452
Hpy188III TCNNGA 2 cut(s) 323, 418
Hpy8I GTNNAC 1 cut(s) 464
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 1 cut(s) 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
HpyF3I CTNAG 4 cut(s) 48, 113, 294, 331
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 3 cut(s) 104, 398, 448
HspAI GCGC 1 cut(s) 71
Kpn2I TCCGGA 1 cut(s) 417
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 3 cut(s) 32, 319, 370
LmnI GCTCC 5 cut(s) 52, 60, 212, 231, 271
LweI GCATC 2 cut(s) 58, 118
MaeII ACGT 1 cut(s) 25
MalI GATC 3 cut(s) 34, 321, 372
MbiI CCGCTC 1 cut(s) 234
MboI GATC 3 cut(s) 32, 319, 370
MboII GAAGA 3 cut(s) 329, 416, 446
MhlI GDGCHC 3 cut(s) 57, 217, 466
MluCI AATT 2 cut(s) 38, 143
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 7 cut(s) 43, 171, 232, 260, 273, 424, 425
MroI TCCGGA 1 cut(s) 417
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 2 cut(s) 41, 425
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 2 cut(s) 175, 418
MspR9I CCNGG 3 cut(s) 59, 154, 227
MvaI CCWGG 3 cut(s) 59, 154, 227
MwoI GCNNNNNNNGC 1 cut(s) 106
NdeII GATC 3 cut(s) 32, 319, 370
NlaIII CATG 3 cut(s) 104, 398, 448
NspI RCATGY 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 197
PflMI CCANNNNNTGG 1 cut(s) 364
PfoI TCCNGGA 1 cut(s) 57
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
Psp124BI GAGCTC 1 cut(s) 57
Psp1406I AACGTT 1 cut(s) 25
Psp6I CCWGG 3 cut(s) 57, 152, 225
PspGI CCWGG 3 cut(s) 57, 152, 225
PvuII CAGCTG 1 cut(s) 96
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 2 cut(s) 41, 425
Sau3AI GATC 3 cut(s) 32, 319, 370
ScaI AGTACT 1 cut(s) 329
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 3 cut(s) 59, 154, 227
SduI GDGCHC 3 cut(s) 57, 217, 466
SetI ASST 6 cut(s) 28, 57, 98, 192, 228, 284
SfaNI GCATC 2 cut(s) 58, 118
Sse9I AATT 2 cut(s) 38, 143
SsiI CCGC 2 cut(s) 234, 312
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 3 cut(s) 57, 152, 225
TaiI ACGT 1 cut(s) 28
TaqI TCGA 1 cut(s) 35
TasI AATT 2 cut(s) 38, 143
TatI WGTACW 1 cut(s) 327
Tru1I TTAA 2 cut(s) 41, 425
Tru9I TTAA 2 cut(s) 41, 425
TscAI CASTG 1 cut(s) 380
TspDTI ATGAA 4 cut(s) 102, 156, 185, 433
TspRI CASTG 1 cut(s) 380
Van91I CCANNNNNTGG 1 cut(s) 364
VneI GTGCAC 1 cut(s) 462
XceI RCATGY 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 197
ZrmI AGTACT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.