Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006653

Physical Location & Seq

Genomic Coordinates Reverse (-)

5703730 .. 5706429

Gene Structure 2700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G053300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGAGAGAAAGGCAGTGAGAAGCGAAGCGATGGAGAGCATATCAGAGAGGCTATCGTCAATGGAGGGCCTCTACTTCCCTCGTGCCTTACACTCCAACACCGTCAATCCCTCCCAGCGCAAGGCCATACTCCTGGACCTCCTCTCTCGCGACGTCACTGTTTTCCTAGAACGTTATGGATCGAAATTGACTTTTGATGAGCTCCAGGAGTTTGACGTGCTTAAAGATGATTATGAAATCAATTGGCATGTGAATCATCTTAGAAGTTTAATGAGCCCAACGTCAGATGAATTGAAGTCAAGGTCAGTTACAGTCAAGAACCGGAGGCGAGCATATCTGAATAAACTGATATTTGATGGGCATTATTTCTCAGAAGATGCTATGAGGGAGAGGGAGCCATACTTGCATCACGAGTATGTAGGGAAGTTTCAGGATCCTATTGGAAGGAGCATGGCCAGACCTGGGGAGAGGTGGTCAGACACGTTGTTGAGGAGGGCAGAGGAAGCAATTTTGGTTGCAAAGATTAGAGGGGAGCAGCAAAGGTTGGGTGTTTCTGAGAGTGATTGGGTTGGTGGTGAGAGAAACCAGCAAGAAGAGCAAGAAGAGGAAGAAGAGGAAGAAGAAGAAGAGGAAGATGAAGACGAAGACGAAGAAGAAGTTAAGAAGGCTAACAGGGGCGCACAATCTGCAGAGGTGCTTATGGATCATCCAGATGCACCCAATGGTGCTCAAACTGGGGATCGTCTGGATGCGCCCAATGGTGCTCAAACCATCACAGACGAGTGCAGTGAGCAAGCAACTGTATCTGCAGAAGAGTTGCAAGATCAGATGGATCAGTTCACCCACATCATGCAGCAGAAGTTTTTGTTGGGAGAAGATAATGAGTATCTAGATTACTCAAAAATCGACAATGATGAGACCTTGGATGATCACTGGCAGAGGGAAGCCAACCATGACGCTGAGGAGAAGTACTTTGCTGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2052

Protein Analysis

329

Amino Acids

38.22

Weight (kDa)

4.51

Isoelectric Point (pI)

64.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47090 AT5G47090
fragaria_vesca	FvH4_5g20690 FvH4_5g20690
malus_domestica	MD04G1054200.v1.1
prunus_persica	Prupe.5G053300_v2.0.a1 Prupe.5G053300_v2.0.a1
pyrus_communis	pycom04g04730
rosa_chinensis	RchiOBHm_Chr7g0206421
rosa_laevigata	RLG00000003313
rosa_multiflora	Rmu_sc0003652.1_g000021 Rmu_sc0005065.1_g000026
rosa_roxburghii	Rroxscaffold_3G00251530
rosa_rugosa	Rorug07G0097400
rosa_samantha	Rh1AG232100 Rh1BG376000 Rh1CG216900 Rh1CG389800 Rh1DG406600 Rh3BG038900 Rh5AG411300 Rh7AG229000 Rh7BG225500 Rh7CG243600 Rh7DG236000
rosa_wichuraiana	Rw7G019710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	156
AccII	CGCG	1 cut(s)	150
AclI	AACGTT	1 cut(s)	172
AclWI	GGATC	6 cut(s)	187, 428, 441, 711, 747, 840
AcoI	YGGCCR	1 cut(s)	453
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	1 cut(s)	971
AfiI	CCNNNNNNNGG	2 cut(s)	121, 462
AflIII	ACRYGT	1 cut(s)	480
AgsI	TTSAA	1 cut(s)	295
AjiI	CACGTC	1 cut(s)	217
AjnI	CCWGG	3 cut(s)	132, 204, 460
AjuI	GAANNNNNNNTTGG	2 cut(s)	851, 883
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
Alw21I	GWGCWC	3 cut(s)	204, 730, 766
Alw26I	GTCTC	1 cut(s)	911
AlwI	GGATC	6 cut(s)	187, 428, 441, 711, 747, 840
AoxI	GGCC	3 cut(s)	67, 123, 453
ApeKI	GCWGC	2 cut(s)	535, 853
AspLEI	GCGC	3 cut(s)	120, 680, 754
AspS9I	GGNCC	2 cut(s)	67, 136
AsuHPI	GGTGA	2 cut(s)	587, 832
AvaII	GGWCC	1 cut(s)	136
BalI	TGGCCA	1 cut(s)	455
BamHI	GGATCC	1 cut(s)	433
BanII	GRGCYC	2 cut(s)	204, 278
BauI	CACGAG	2 cut(s)	81, 410
BbsI	GAAGAC	2 cut(s)	645, 651
Bbv12I	GWGCWC	3 cut(s)	204, 730, 766
BbvCI	CCTCAGC	2 cut(s)	960, 978
BbvI	GCAGC	2 cut(s)	547, 865
BccI	CCATC	4 cut(s)	25, 350, 779, 823
BciT130I	CCWGG	3 cut(s)	134, 206, 462
BclI	TGATCA	1 cut(s)	928
BcoDI	GTCTC	1 cut(s)	911
BfaI	CTAG	2 cut(s)	167, 890
BfmI	CTRYAG	2 cut(s)	687, 807
BisI	GCNGC	2 cut(s)	536, 854
BlsI	GCNGC	2 cut(s)	537, 855
BmcAI	AGTACT	1 cut(s)	971
Bme1390I	CCNGG	3 cut(s)	134, 206, 462
Bme18I	GGWCC	1 cut(s)	136
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	2 cut(s)	67, 136
BmiI	GGNNCC	2 cut(s)	396, 435
BmrFI	CCNGG	3 cut(s)	134, 206, 462
BmrI	ACTGGG	1 cut(s)	744
BmsI	GCATC	4 cut(s)	367, 415, 703, 739
BmuI	ACTGGG	1 cut(s)	744
BpiI	GAAGAC	2 cut(s)	645, 651
BpmI	CTGGAG	1 cut(s)	188
Bpu10I	CCTNAGC	2 cut(s)	960, 978
BsaHI	GRCGYC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	911
BsaJI	CCNNGG	2 cut(s)	461, 921
BsaWI	WCCGGW	1 cut(s)	321
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 462
Bse1I	ACTGG	2 cut(s)	739, 938
BseBI	CCWGG	3 cut(s)	134, 206, 462
BseDI	CCNNGG	2 cut(s)	461, 921
BseGI	GGATG	3 cut(s)	706, 754, 931
BseLI	CCNNNNNNNGG	2 cut(s)	121, 462
BseMII	CTCAG	4 cut(s)	384, 546, 951, 969
BseNI	ACTGG	2 cut(s)	739, 938
BseRI	GAGGAG	3 cut(s)	131, 505, 977
BseXI	GCAGC	2 cut(s)	547, 865
BseYI	CCCAGC	1 cut(s)	114
BsgI	GTGCAG	1 cut(s)	805
Bsh1236I	CGCG	1 cut(s)	150
BshFI	GGCC	3 cut(s)	69, 125, 455
BsiHKAI	GWGCWC	3 cut(s)	204, 730, 766
BsiSI	CCGG	1 cut(s)	322
BslI	CCNNNNNNNGG	2 cut(s)	121, 462
BsmAI	GTCTC	1 cut(s)	911
BsnI	GGCC	3 cut(s)	69, 125, 455
Bso31I	GGTCTC	1 cut(s)	911
Bsp1286I	GDGCHC	4 cut(s)	204, 278, 730, 766
Bsp143I	GATC	7 cut(s)	179, 433, 703, 739, 823, 832, 928
Bsp68I	TCGCGA	1 cut(s)	150
BspANI	GGCC	3 cut(s)	69, 125, 455
BspCNI	CTCAG	4 cut(s)	383, 547, 952, 970
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	396, 435
BspMAI	CTGCAG	2 cut(s)	691, 811
BspPI	GGATC	6 cut(s)	187, 428, 441, 711, 747, 840
BspQI	GCTCTTC	1 cut(s)	588
BspTNI	GGTCTC	1 cut(s)	911
BsrI	ACTGG	2 cut(s)	739, 938
BssECI	CCNNGG	2 cut(s)	461, 921
BssMI	GATC	7 cut(s)	179, 433, 703, 739, 823, 832, 928
BssNI	GRCGYC	1 cut(s)	153
BssSI	CACGAG	2 cut(s)	81, 410
BssT1I	CCWWGG	1 cut(s)	921
Bst2BI	CACGAG	2 cut(s)	81, 410
Bst2UI	CCWGG	3 cut(s)	134, 206, 462
Bst4CI	ACNGT	4 cut(s)	103, 160, 313, 802
Bst6I	CTCTTC	5 cut(s)	588, 597, 606, 621, 807
BstACI	GRCGYC	1 cut(s)	153
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstC8I	GCNNGC	2 cut(s)	330, 795
BstDEI	CTNAG	5 cut(s)	260, 370, 555, 960, 978
BstF5I	GGATG	3 cut(s)	706, 754, 931
BstFNI	CGCG	1 cut(s)	150
BstHHI	GCGC	3 cut(s)	120, 680, 754
BstKTI	GATC	7 cut(s)	182, 436, 706, 742, 826, 835, 931
BstMAI	GTCTC	1 cut(s)	911
BstMBI	GATC	7 cut(s)	179, 433, 703, 739, 823, 832, 928
BstMWI	GCNNNNNNNGC	4 cut(s)	403, 503, 595, 686
BstNI	CCWGG	3 cut(s)	134, 206, 462
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	3 cut(s)	132, 204, 460
BstSFI	CTRYAG	2 cut(s)	687, 807
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	547, 865
BstV2I	GAAGAC	2 cut(s)	645, 651
BstX2I	RGATCY	1 cut(s)	433
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	433
BsuRI	GGCC	3 cut(s)	69, 125, 455
BtgZI	GCGATG	1 cut(s)	44
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	3 cut(s)	706, 754, 931
BtsI	GCAGTG	2 cut(s)	21, 793
BtsIMutI	CAGTG	4 cut(s)	21, 156, 793, 931
BtuMI	TCGCGA	1 cut(s)	150
Cac8I	GCNNGC	2 cut(s)	330, 795
CfoI	GCGC	3 cut(s)	120, 680, 754
Cfr13I	GGNCC	2 cut(s)	67, 136
CseI	GACGC	1 cut(s)	965
Csp6I	GTAC	1 cut(s)	970
CviAII	CATG	4 cut(s)	248, 451, 850, 953
CviJI	RGCY	9 cut(s)	52, 69, 125, 202, 276, 397, 455, 668, 947
CviKI_1	RGCY	9 cut(s)	52, 69, 125, 202, 276, 397, 455, 668, 947
CviQI	GTAC	1 cut(s)	970
DdeI	CTNAG	5 cut(s)	260, 370, 555, 960, 978
DpnI	GATC	7 cut(s)	181, 435, 705, 741, 825, 834, 930
DpnII	GATC	7 cut(s)	179, 433, 703, 739, 823, 832, 928
EaeI	YGGCCR	1 cut(s)	453
Eam1104I	CTCTTC	5 cut(s)	588, 597, 606, 621, 807
EarI	CTCTTC	5 cut(s)	588, 597, 606, 621, 807
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	921
Eco24I	GRGCYC	2 cut(s)	204, 278
Eco31I	GGTCTC	1 cut(s)	911
Eco47I	GGWCC	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	3 cut(s)	132, 204, 460
EcoT14I	CCWWGG	1 cut(s)	921
EcoT38I	GRGCYC	2 cut(s)	204, 278
ErhI	CCWWGG	1 cut(s)	921
FaeI	CATG	4 cut(s)	251, 454, 853, 956
FatI	CATG	4 cut(s)	247, 450, 849, 952
FbaI	TGATCA	1 cut(s)	928
Fnu4HI	GCNGC	2 cut(s)	536, 854
FokI	GGATG	3 cut(s)	693, 761, 938
FriOI	GRGCYC	2 cut(s)	204, 278
Fsp4HI	GCNGC	2 cut(s)	536, 854
FspBI	CTAG	2 cut(s)	167, 890
GlaI	GCGC	3 cut(s)	119, 679, 753
GluI	GCNGC	2 cut(s)	536, 854
GsaI	CCCAGC	1 cut(s)	118
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	3 cut(s)	69, 125, 455
HapII	CCGG	1 cut(s)	322
HgaI	GACGC	1 cut(s)	965
HhaI	GCGC	3 cut(s)	120, 680, 754
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	4 cut(s)	251, 454, 853, 956
Hin6I	GCGC	3 cut(s)	118, 678, 752
HinP1I	GCGC	3 cut(s)	118, 678, 752
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	1 cut(s)	322
HphI	GGTGA	2 cut(s)	587, 832
Hpy166II	GTNNAC	1 cut(s)	840
Hpy188I	TCNGA	7 cut(s)	46, 286, 339, 373, 478, 556, 828
Hpy188III	TCNNGA	7 cut(s)	149, 316, 410, 431, 710, 746, 890
Hpy8I	GTNNAC	1 cut(s)	840
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	2 cut(s)	438, 658
HpyCH4III	ACNGT	4 cut(s)	103, 160, 313, 802
HpyCH4IV	ACGT	5 cut(s)	153, 172, 216, 281, 482
HpyCH4V	TGCA	8 cut(s)	406, 518, 689, 716, 786, 809, 820, 853
HpyF10VI	GCNNNNNNNGC	4 cut(s)	403, 503, 595, 686
HpyF3I	CTNAG	5 cut(s)	260, 370, 555, 960, 978
HpySE526I	ACGT	5 cut(s)	153, 172, 216, 281, 482
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	4 cut(s)	251, 454, 853, 956
HspAI	GCGC	3 cut(s)	118, 678, 752
Ksp22I	TGATCA	1 cut(s)	928
Kzo9I	GATC	7 cut(s)	179, 433, 703, 739, 823, 832, 928
LguI	GCTCTTC	1 cut(s)	588
LmnI	GCTCC	4 cut(s)	207, 394, 447, 532
Lsp1109I	GCAGC	2 cut(s)	547, 865
LweI	GCATC	4 cut(s)	367, 415, 703, 739
MaeI	CTAG	2 cut(s)	167, 890
MaeII	ACGT	5 cut(s)	153, 172, 216, 281, 482
MaeIII	GTNAC	2 cut(s)	154, 307
MalI	GATC	7 cut(s)	181, 435, 705, 741, 825, 834, 930
MboI	GATC	7 cut(s)	179, 433, 703, 739, 823, 832, 928
MfeI	CAATTG	1 cut(s)	241
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	4 cut(s)	204, 278, 730, 766
MlsI	TGGCCA	1 cut(s)	455
MluCI	AATT	4 cut(s)	185, 241, 290, 507
MluNI	TGGCCA	1 cut(s)	455
MmeI	TCCRAC	1 cut(s)	120
Mox20I	TGGCCA	1 cut(s)	455
MscI	TGGCCA	1 cut(s)	455
MseI	TTAA	4 cut(s)	222, 269, 660, 985
MslI	CAYNNNNRTG	2 cut(s)	414, 711
Msp20I	TGGCCA	1 cut(s)	455
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	3 cut(s)	134, 206, 462
MunI	CAATTG	1 cut(s)	241
MvaI	CCWGG	3 cut(s)	134, 206, 462
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	4 cut(s)	403, 503, 595, 686
NdeII	GATC	7 cut(s)	179, 433, 703, 739, 823, 832, 928
NlaIII	CATG	4 cut(s)	251, 454, 853, 956
NlaIV	GGNNCC	2 cut(s)	396, 435
NmuCI	GTSAC	1 cut(s)	154
NruI	TCGCGA	1 cut(s)	150
NspI	RCATGY	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	588
PfeI	GAWTC	1 cut(s)	253
PfoI	TCCNGGA	2 cut(s)	132, 204
PkrI	GCNGC	2 cut(s)	537, 855
Psp124BI	GAGCTC	1 cut(s)	204
Psp1406I	AACGTT	1 cut(s)	172
Psp6I	CCWGG	3 cut(s)	132, 204, 460
PspFI	CCCAGC	1 cut(s)	114
PspGI	CCWGG	3 cut(s)	132, 204, 460
PspN4I	GGNNCC	2 cut(s)	396, 435
PspPI	GGNCC	2 cut(s)	67, 136
PstI	CTGCAG	2 cut(s)	691, 811
PsuI	RGATCY	1 cut(s)	433
RruI	TCGCGA	1 cut(s)	150
RsaI	GTAC	1 cut(s)	971
RsaNI	GTAC	1 cut(s)	970
RseI	CAYNNNNRTG	2 cut(s)	414, 711
SacI	GAGCTC	1 cut(s)	204
SapI	GCTCTTC	1 cut(s)	588
SaqAI	TTAA	4 cut(s)	222, 269, 660, 985
SatI	GCNGC	2 cut(s)	536, 854
Sau3AI	GATC	7 cut(s)	179, 433, 703, 739, 823, 832, 928
Sau96I	GGNCC	2 cut(s)	67, 136
ScaI	AGTACT	1 cut(s)	971
ScrFI	CCNGG	3 cut(s)	134, 206, 462
SduI	GDGCHC	4 cut(s)	204, 278, 730, 766
SfaNI	GCATC	4 cut(s)	367, 415, 703, 739
SfcI	CTRYAG	2 cut(s)	687, 807
SinI	GGWCC	1 cut(s)	136
SmiMI	CAYNNNNRTG	2 cut(s)	414, 711
Sse9I	AATT	4 cut(s)	185, 241, 290, 507
SspMI	CTAG	2 cut(s)	167, 890
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	3 cut(s)	132, 204, 460
StyI	CCWWGG	1 cut(s)	921
TaaI	ACNGT	4 cut(s)	103, 160, 313, 802
TaiI	ACGT	5 cut(s)	156, 175, 219, 284, 485
TaqI	TCGA	2 cut(s)	182, 906
TasI	AATT	4 cut(s)	185, 241, 290, 507
TatI	WGTACW	1 cut(s)	969
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	4 cut(s)	222, 269, 660, 985
Tru9I	TTAA	4 cut(s)	222, 269, 660, 985
TscAI	CASTG	4 cut(s)	21, 163, 793, 938
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	2 cut(s)	535, 853
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	3 cut(s)	249, 303, 651
TspRI	CASTG	4 cut(s)	21, 163, 793, 938
VpaK11BI	GGWCC	1 cut(s)	136
XbaI	TCTAGA	1 cut(s)	889
XceI	RCATGY	1 cut(s)	251
XspI	CTAG	2 cut(s)	167, 890
ZraI	GACGTC	1 cut(s)	154
ZrmI	AGTACT	1 cut(s)	971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.