AT5G51370

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001980
Physical Location & Seq
Forward (+)
20872719 .. 20874349
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G51370.1

Sequence Viewer

Length: 1068 bp
ATGTCTGAATTTGATAAGCATGTCCAAAACCACATCAAAAATGAGAAGCCTTTCAATTCAATCAAACCTTCAGAAATCGATTCAACTCTCTCTTTATCCGATTCTCTTCTCCTCAAGATCATCGAGAAGCTTCCTGAATCACAGAGCAACGACGTCTCACTCGTCTGCAAACGCTGGTTGAATCTTCAGGGACAACGTTTACGGAGTCTAAAGCTTCTTGATTTTGATTTTCTCTTGTCTGAGAGACTCACCACGAGATTCCCTAATCTCACGCATGTCGATTTGGTGAACGCGTGTATGAATCCGCGGGTCAATTCCGGTATTTTGTTCTGTCACAAGTCGATTTCTTTTCATTTATCTTCAGACTCGTCGAATTGGGAGTTTCTTGAGGAGAATCTATTGCACAGTGACGTAATTGATAGAGGGCTTAGGATATTAAGCAGAGAGAGTTTTGATTTGCTTAACCTTAAAGTGATTAACGCTTCTGAATTGGGATTATTGAGTTTAGCTGGAGACTGCTCTGATTTGCAAGAGTTAGAATTGCATAAGTGTAATGATAATCTCTTGCATGGCATTGCTGCGTGTAAGAATCTGAAGGGATTGAGATTGGTAGGAAGCGTAGACGGATTGTATAGTTCATCTGTGTCGGATATAGGATTAACATTCTTAGCACAAGGATGTAGGAGTTTGGTGAAGCTTGAGCTTAGTGGTTGTGAAGGTAGCTTTGATGGGATTAAAGCAATTGGGCAATGTTGTGAAGTGCTTGAGGAGTTGAGTATTTGTGACCATAGAATGGACGATGGTTGGATCGCTGCGCTTTCGTATTTTGAGAGTTTGAAGATATTGAGGATTTCGTCTTGTAGAAAGATAGACGCTAGTCCTGGACCGGAAAAGTTGTTGCGGTCTTGTCCTGCTATGGAGAGTTTGCAGCTCAAGAGGTGTTGTTTGAATGACAAGGAGGGGATAAAAGCTTTGTTTAAAGTGTGTGATGGAGCAACAGAGGTTAATATTCAGGATTGTTGGGGACTGAGTGATGATTGTTTCAGTTTGGCTAAAGCTTTCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like Remorin_C

Protein Analysis

355

Amino Acids

39.56

Weight (kDa)

5.55

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 156
AccB7I CCANNNNNTGG 1 cut(s) 793
AccI GTMKAC 1 cut(s) 621
AccII CGCG 2 cut(s) 293, 307
AciI CCGC 3 cut(s) 305, 307, 901
AclI AACGTT 1 cut(s) 196
AclWI GGATC 1 cut(s) 815
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 4 cut(s) 54, 170, 345, 614
AcyI GRCGYC 1 cut(s) 153
AfiI CCNNNNNNNGG 1 cut(s) 793
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 6 cut(s) 55, 60, 84, 181, 838, 949
AjnI CCWGG 1 cut(s) 880
AluBI AGCT 9 cut(s) 130, 214, 509, 697, 703, 723, 931, 971, 1058
AluI AGCT 9 cut(s) 130, 214, 509, 697, 703, 723, 931, 971, 1058
Alw26I GTCTC 3 cut(s) 160, 238, 507
AlwI GGATC 1 cut(s) 815
ApeKI GCWGC 3 cut(s) 578, 812, 928
ApoI RAATTY 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 817
AspS9I GGNCC 1 cut(s) 884
AsuHPI GGTGA 3 cut(s) 241, 298, 703
AvaII GGWCC 1 cut(s) 884
BauI CACGAG 1 cut(s) 253
BbvI GCAGC 3 cut(s) 565, 799, 940
BccI CCATC 3 cut(s) 722, 794, 983
BciT130I CCWGG 1 cut(s) 882
BcoDI GTCTC 3 cut(s) 160, 238, 507
BfaI CTAG 1 cut(s) 876
BisI GCNGC 3 cut(s) 579, 813, 929
BlsI GCNGC 3 cut(s) 580, 814, 930
Bme1390I CCNGG 1 cut(s) 882
Bme18I GGWCC 1 cut(s) 884
BmgT120I GGNCC 1 cut(s) 884
BmrFI CCNGG 1 cut(s) 882
BoxI GACNNNNGTC 1 cut(s) 876
BpmI CTGGAG 1 cut(s) 531
Bpu10I CCTNAGC 1 cut(s) 428
BpuEI CTTGAG 5 cut(s) 98, 407, 719, 785, 917
Bsa29I ATCGAT 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 305
BsaWI WCCGGW 2 cut(s) 317, 886
Bsc4I CCNNNNNNNGG 1 cut(s) 793
Bse3DI GCAATG 2 cut(s) 573, 755
BseBI CCWGG 1 cut(s) 882
BseCI ATCGAT 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 1 cut(s) 683
BseLI CCNNNNNNNGG 1 cut(s) 793
BseMI GCAATG 2 cut(s) 573, 755
BseMII CTCAG 2 cut(s) 231, 1019
BseRI GAGGAG 3 cut(s) 101, 404, 782
BseXI GCAGC 3 cut(s) 565, 799, 940
Bsh1236I CGCG 2 cut(s) 293, 307
BshVI ATCGAT 1 cut(s) 78
BsiSI CCGG 2 cut(s) 318, 887
BslFI GGGAC 2 cut(s) 204, 1038
BslI CCNNNNNNNGG 1 cut(s) 793
BsmAI GTCTC 3 cut(s) 160, 238, 507
BsmBI CGTCTC 1 cut(s) 160
BsmFI GGGAC 2 cut(s) 204, 1038
Bsp143I GATC 2 cut(s) 117, 807
BspACI CCGC 3 cut(s) 305, 307, 901
BspCNI CTCAG 2 cut(s) 232, 1020
BspDI ATCGAT 1 cut(s) 78
BspFNI CGCG 2 cut(s) 293, 307
BspPI GGATC 1 cut(s) 815
BsrDI GCAATG 2 cut(s) 573, 755
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 2 cut(s) 117, 807
BssNI GRCGYC 1 cut(s) 153
BssSI CACGAG 1 cut(s) 253
Bst2BI CACGAG 1 cut(s) 253
Bst2UI CCWGG 1 cut(s) 882
Bst4CI ACNGT 1 cut(s) 407
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 1 cut(s) 153
BstDEI CTNAG 5 cut(s) 240, 428, 667, 704, 1028
BstDSI CCRYGG 1 cut(s) 305
BstF5I GGATG 1 cut(s) 683
BstFNI CGCG 2 cut(s) 293, 307
BstHHI GCGC 1 cut(s) 817
BstKTI GATC 2 cut(s) 120, 810
BstMAI GTCTC 3 cut(s) 160, 238, 507
BstMBI GATC 2 cut(s) 117, 807
BstNI CCWGG 1 cut(s) 882
BstNSI RCATGY 2 cut(s) 23, 278
BstPAI GACNNNNGTC 1 cut(s) 876
BstSCI CCNGG 1 cut(s) 880
BstUI CGCG 2 cut(s) 293, 307
BstV1I GCAGC 3 cut(s) 565, 799, 940
Bsu15I ATCGAT 1 cut(s) 78
BsuTUI ATCGAT 1 cut(s) 78
BtgI CCRYGG 1 cut(s) 305
BtsCI GGATG 1 cut(s) 683
BtsIMutI CAGTG 1 cut(s) 412
CfoI GCGC 1 cut(s) 817
Cfr13I GGNCC 1 cut(s) 884
Cfr42I CCGCGG 1 cut(s) 308
ClaI ATCGAT 1 cut(s) 78
CseI GACGC 1 cut(s) 881
CviAII CATG 3 cut(s) 20, 275, 569
DdeI CTNAG 5 cut(s) 240, 428, 667, 704, 1028
DpnI GATC 2 cut(s) 119, 809
DpnII GATC 2 cut(s) 117, 807
DraI TTTAAA 1 cut(s) 979
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 884
Eco57I CTGAAG 4 cut(s) 54, 170, 345, 614
EcoRII CCWGG 1 cut(s) 880
Esp3I CGTCTC 1 cut(s) 160
FaeI CATG 3 cut(s) 23, 278, 572
FaiI YATR 9 cut(s) 21, 276, 299, 546, 570, 633, 653, 789, 917
FaqI GGGAC 2 cut(s) 204, 1038
FatI CATG 3 cut(s) 19, 274, 568
FauI CCCGC 1 cut(s) 300
FblI GTMKAC 1 cut(s) 621
Fnu4HI GCNGC 3 cut(s) 579, 813, 929
FokI GGATG 1 cut(s) 690
Fsp4HI GCNGC 3 cut(s) 579, 813, 929
FspBI CTAG 1 cut(s) 876
GlaI GCGC 1 cut(s) 816
GluI GCNGC 3 cut(s) 579, 813, 929
GsuI CTGGAG 1 cut(s) 531
HapII CCGG 2 cut(s) 318, 887
HgaI GACGC 1 cut(s) 881
HhaI GCGC 1 cut(s) 817
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 3 cut(s) 23, 278, 572
Hin6I GCGC 1 cut(s) 815
HinP1I GCGC 1 cut(s) 815
HindIII AAGCTT 5 cut(s) 128, 212, 695, 969, 1056
HpaII CCGG 2 cut(s) 318, 887
HphI GGTGA 3 cut(s) 241, 298, 703
Hpy166II GTNNAC 3 cut(s) 200, 289, 622
Hpy188I TCNGA 9 cut(s) 7, 73, 100, 241, 364, 487, 523, 594, 649
Hpy188III TCNNGA 7 cut(s) 115, 124, 134, 218, 386, 934, 1013
Hpy8I GTNNAC 3 cut(s) 200, 289, 622
Hpy99I CGWCG 2 cut(s) 155, 373
HpyAV CCTTC 3 cut(s) 78, 589, 710
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4IV ACGT 3 cut(s) 153, 196, 411
HpyCH4V TGCA 6 cut(s) 168, 403, 529, 544, 568, 928
HpyF3I CTNAG 5 cut(s) 240, 428, 667, 704, 1028
HpySE526I ACGT 3 cut(s) 153, 196, 411
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 3 cut(s) 23, 278, 572
HspAI GCGC 1 cut(s) 815
KspI CCGCGG 1 cut(s) 308
Kzo9I GATC 2 cut(s) 117, 807
LmnI GCTCC 1 cut(s) 992
Lsp1109I GCAGC 3 cut(s) 565, 799, 940
MaeI CTAG 1 cut(s) 876
MaeII ACGT 3 cut(s) 153, 196, 411
MaeIII GTNAC 3 cut(s) 332, 407, 782
MalI GATC 2 cut(s) 119, 809
MboI GATC 2 cut(s) 117, 807
MboII GAAGA 4 cut(s) 98, 176, 351, 850
MfeI CAATTG 1 cut(s) 741
MluCI AATT 8 cut(s) 8, 55, 313, 373, 414, 488, 539, 741
MluI ACGCGT 1 cut(s) 291
MlyI GAGTC 3 cut(s) 214, 240, 359
MmeI TCCRAC 2 cut(s) 627, 785
MnlI CCTC 8 cut(s) 122, 382, 416, 760, 840, 930, 952, 994
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 8 cut(s) 437, 462, 468, 477, 659, 735, 978, 1005
MslI CAYNNNNRTG 1 cut(s) 676
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 2 cut(s) 318, 887
MspR9I CCNGG 1 cut(s) 882
MunI CAATTG 1 cut(s) 741
MvaI CCWGG 1 cut(s) 882
MvnI CGCG 2 cut(s) 293, 307
NdeII GATC 2 cut(s) 117, 807
NlaIII CATG 3 cut(s) 23, 278, 572
NmuCI GTSAC 3 cut(s) 332, 407, 782
NspI RCATGY 2 cut(s) 23, 278
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 8 cut(s) 80, 101, 137, 181, 258, 301, 394, 589
PflMI CCANNNNNTGG 1 cut(s) 793
PfoI TCCNGGA 1 cut(s) 880
PkrI GCNGC 3 cut(s) 580, 814, 930
PleI GAGTC 3 cut(s) 213, 240, 359
PpsI GAGTC 3 cut(s) 213, 240, 359
PshAI GACNNNNGTC 1 cut(s) 876
Psp1406I AACGTT 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 880
PspGI CCWGG 1 cut(s) 880
PspPI GGNCC 1 cut(s) 884
RseI CAYNNNNRTG 1 cut(s) 676
SacII CCGCGG 1 cut(s) 308
SaqAI TTAA 8 cut(s) 437, 462, 468, 477, 659, 735, 978, 1005
SatI GCNGC 3 cut(s) 579, 813, 929
Sau3AI GATC 2 cut(s) 117, 807
Sau96I GGNCC 1 cut(s) 884
SchI GAGTC 3 cut(s) 214, 240, 359
ScrFI CCNGG 1 cut(s) 882
Sfr303I CCGCGG 1 cut(s) 308
SgrBI CCGCGG 1 cut(s) 308
SinI GGWCC 1 cut(s) 884
SmiMI CAYNNNNRTG 1 cut(s) 676
SmlI CTYRAG 5 cut(s) 113, 386, 698, 764, 932
SmoI CTYRAG 5 cut(s) 113, 386, 698, 764, 932
Sse9I AATT 8 cut(s) 8, 55, 313, 373, 414, 488, 539, 741
SsiI CCGC 3 cut(s) 305, 307, 901
SspI AATATT 1 cut(s) 1009
SspMI CTAG 1 cut(s) 876
StyD4I CCNGG 1 cut(s) 880
TaaI ACNGT 1 cut(s) 407
TaiI ACGT 3 cut(s) 156, 199, 414
TaqI TCGA 5 cut(s) 78, 123, 279, 341, 371
TasI AATT 8 cut(s) 8, 55, 313, 373, 414, 488, 539, 741
TfiI GAWTC 8 cut(s) 80, 101, 137, 181, 258, 301, 394, 589
Tru1I TTAA 8 cut(s) 437, 462, 468, 477, 659, 735, 978, 1005
Tru9I TTAA 8 cut(s) 437, 462, 468, 477, 659, 735, 978, 1005
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 3 cut(s) 332, 407, 782
TseI GCWGC 3 cut(s) 578, 812, 928
Tsp45I GTSAC 3 cut(s) 332, 407, 782
TspDTI ATGAA 3 cut(s) 314, 341, 627
TspGWI ACGGA 2 cut(s) 217, 639
TspRI CASTG 1 cut(s) 412
Van91I CCANNNNNTGG 1 cut(s) 793
VpaK11BI GGWCC 1 cut(s) 884
XapI RAATTY 1 cut(s) 8
XceI RCATGY 2 cut(s) 23, 278
XmiI GTMKAC 1 cut(s) 621
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 1 cut(s) 876
ZraI GACGTC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.