Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7963096.1

Orthogroup ID

OG0001980

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 432

Gene Structure 431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7963096.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 431 bp

atggatgtgctgaagcagagcgtggtggacgatgggctgagactgattgcgaattcgtacccgaatctgcggcgggttgcggtgattggtgccggggttgacgggctgttgagcgttgcggaggagtgtcagacgctgcaggagctggagctgcattgctgtggggacttggcgctgaaggggatcagtgggtttaggaacttgcagattgtgaagttgattggctgcgtggatgggttttacagcgcgcagatttcggatattgggttgactattttggcgcaggggtgcaggaggttggtgaagcttgagctttgtgggtgtgaggggagctatgatgggattaaggcgattgggcagtgttgccagatgcttgaggagctgactctcagtgatcataggatggatggagggtggttggcggcgttgca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Remorin_C

Protein Analysis

143

Amino Acids

15.37

Weight (kDa)

4.79

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51370 AT5G51370 AT5G51380
fragaria_vesca	FvH4_7g10820 FvH4_7g27300 FvH4_7g27300 FvH4_7g27300
malus_domestica	MD01G1182100.v1.1 MD02G1213700.v1.1 MD07G1113100.v1.1 MD07G1252400.v1.1 MD11G1194200.v1.1
prunus_persica	Prupe.2G136200_v2.0.a1 Prupe.2G136200_v2.0.a1 Prupe.2G275900_v2.0.a1
pyrus_communis	pycom01g19190 pycom07g09790 pycom07g22480 pycom11g20120
rosa_chinensis	RchiOBHm_Chr1g0348741 RchiOBHm_Chr1g0374141 RchiOBHm_Chr6g0287661
rosa_laevigata	RLG00000012476 RLG00000026759 RLG00000028626
rosa_multiflora	Rmu_co7963096.1_g000001 Rmu_sc0001813.1_g000001 Rmu_sc0006564.1_g000008 Rmu_sc0031820.1_g000001 Rmu_ssc0000007.1_g000044 Rmu_ssc0000450.1_g000002
rosa_roxburghii	Rroxscaffold_4G00283690 Rroxscaffold_4G00306650
rosa_rugosa	Rorug01G0197700 Rorug01G0381000
rosa_samantha	Rh1AG214600 Rh1AG392000 Rh1BG181200 Rh1BG356000 Rh1CG199300 Rh1CG368900 Rh1DG211300 Rh6CG302900
rosa_wichuraiana	Rw1G018210 Rw1G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AccII	CGCG	1 cut(s)	248
AciI	CCGC	5 cut(s)	70, 73, 80, 119, 422
AclWI	GGATC	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	52
AcuI	CTGAAG	2 cut(s)	32, 197
AfaI	GTAC	1 cut(s)	59
AluBI	AGCT	6 cut(s)	145, 151, 307, 313, 333, 382
AluI	AGCT	6 cut(s)	145, 151, 307, 313, 333, 382
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	1 cut(s)	191
AlwNI	CAGNNNCTG	2 cut(s)	136, 145
ApeKI	GCWGC	3 cut(s)	136, 151, 225
ApoI	RAATTY	1 cut(s)	52
AspLEI	GCGC	4 cut(s)	175, 248, 250, 283
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	2 cut(s)	94, 313
BanI	GGYRCC	1 cut(s)	89
BbvI	GCAGC	3 cut(s)	123, 138, 212
BccI	CCATC	5 cut(s)	26, 227, 332, 397, 401
BclI	TGATCA	1 cut(s)	394
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	34
BfmI	CTRYAG	1 cut(s)	137
BfoI	RGCGCY	1 cut(s)	176
BisI	GCNGC	5 cut(s)	71, 137, 152, 226, 423
BlsI	GCNGC	5 cut(s)	72, 138, 153, 227, 424
Bme1390I	CCNGG	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	167
BpuEI	CTTGAG	2 cut(s)	329, 395
BpuMI	CCSGG	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	4 cut(s)	10, 238, 408, 412
BseMI	GCAATG	1 cut(s)	154
BseMII	CTCAG	2 cut(s)	29, 403
BsePI	GCGCGC	1 cut(s)	246
BseRI	GAGGAG	2 cut(s)	137, 392
BseXI	GCAGC	3 cut(s)	123, 138, 212
BsgI	GTGCAG	1 cut(s)	310
Bsh1236I	CGCG	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	179
Bsp143I	GATC	2 cut(s)	183, 394
BspACI	CCGC	5 cut(s)	70, 73, 80, 119, 422
BspCNI	CTCAG	2 cut(s)	30, 402
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	1 cut(s)	91
BspMAI	CTGCAG	1 cut(s)	141
BspPI	GGATC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	93
BssHII	GCGCGC	1 cut(s)	246
BssMI	GATC	2 cut(s)	183, 394
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	2 cut(s)	38, 389
BstF5I	GGATG	4 cut(s)	10, 238, 408, 412
BstFNI	CGCG	1 cut(s)	248
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	4 cut(s)	175, 248, 250, 283
BstKTI	GATC	2 cut(s)	186, 397
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	2 cut(s)	183, 394
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 151, 379
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	137
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	3 cut(s)	123, 138, 212
BtsCI	GGATG	4 cut(s)	10, 238, 408, 412
BtsI	GCAGTG	1 cut(s)	365
BtsIMutI	CAGTG	3 cut(s)	193, 365, 397
Cac8I	GCNNGC	1 cut(s)	248
CaiI	CAGNNNCTG	2 cut(s)	136, 145
CfoI	GCGC	4 cut(s)	175, 248, 250, 283
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	58
CviJI	RGCY	9 cut(s)	37, 106, 145, 151, 225, 307, 313, 333, 382
CviKI_1	RGCY	9 cut(s)	37, 106, 145, 151, 225, 307, 313, 333, 382
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	2 cut(s)	38, 389
DpnI	GATC	2 cut(s)	185, 396
DpnII	GATC	2 cut(s)	183, 394
Eco57I	CTGAAG	2 cut(s)	32, 197
EcoRI	GAATTC	1 cut(s)	52
FaiI	YATR	2 cut(s)	336, 399
FaqI	GGGAC	1 cut(s)	179
FauI	CCCGC	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	394
Fnu4HI	GCNGC	5 cut(s)	71, 137, 152, 226, 423
FokI	GGATG	4 cut(s)	17, 245, 415, 419
Fsp4HI	GCNGC	5 cut(s)	71, 137, 152, 226, 423
GlaI	GCGC	4 cut(s)	174, 247, 249, 282
GluI	GCNGC	5 cut(s)	71, 137, 152, 226, 423
GsuI	CTGGAG	1 cut(s)	167
HaeII	RGCGCY	1 cut(s)	176
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	142
HhaI	GCGC	4 cut(s)	175, 248, 250, 283
Hin6I	GCGC	4 cut(s)	173, 246, 248, 281
HinP1I	GCGC	4 cut(s)	173, 246, 248, 281
HincII	GTYRAC	2 cut(s)	100, 270
HindII	GTYRAC	2 cut(s)	100, 270
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	2 cut(s)	64, 385
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	94, 313
Hpy166II	GTNNAC	3 cut(s)	28, 100, 270
Hpy188I	TCNGA	2 cut(s)	132, 259
Hpy8I	GTNNAC	3 cut(s)	28, 100, 270
HpyAV	CCTTC	1 cut(s)	172
HpyCH4V	TGCA	5 cut(s)	139, 154, 205, 291, 430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 151, 379
HpyF3I	CTNAG	2 cut(s)	38, 389
HspAI	GCGC	4 cut(s)	173, 246, 248, 281
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	183, 394
LmnI	GCTCC	4 cut(s)	142, 148, 330, 379
LpnPI	CCDG	6 cut(s)	106, 125, 131, 269, 277, 380
Lsp1109I	GCAGC	3 cut(s)	123, 138, 212
LweI	GCATC	1 cut(s)	360
MalI	GATC	2 cut(s)	185, 396
MboI	GATC	2 cut(s)	183, 394
MluCI	AATT	1 cut(s)	52
MlyI	GAGTC	1 cut(s)	379
MnlI	CCTC	5 cut(s)	115, 288, 319, 370, 404
MseI	TTAA	1 cut(s)	345
MslI	CAYNNNNRTG	1 cut(s)	159
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	94
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	3 cut(s)	142, 151, 379
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	2 cut(s)	183, 394
NlaIV	GGNNCC	1 cut(s)	91
PauI	GCGCGC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	5 cut(s)	72, 138, 153, 227, 424
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	91
PstI	CTGCAG	1 cut(s)	141
PstNI	CAGNNNCTG	2 cut(s)	136, 145
PteI	GCGCGC	1 cut(s)	246
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	5 cut(s)	71, 137, 152, 226, 423
Sau3AI	GATC	2 cut(s)	183, 394
SchI	GAGTC	1 cut(s)	379
ScrFI	CCNGG	1 cut(s)	94
SetI	ASST	7 cut(s)	147, 153, 299, 309, 315, 335, 384
SfaNI	GCATC	1 cut(s)	360
SfcI	CTRYAG	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	2 cut(s)	308, 374
SmoI	CTYRAG	2 cut(s)	308, 374
Sse9I	AATT	1 cut(s)	52
SsiI	CCGC	5 cut(s)	70, 73, 80, 119, 422
StyD4I	CCNGG	1 cut(s)	92
TasI	AATT	1 cut(s)	52
TauI	GCSGC	2 cut(s)	73, 425
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	3 cut(s)	193, 365, 397
TseI	GCWGC	3 cut(s)	136, 151, 225
TspRI	CASTG	3 cut(s)	193, 365, 397
XapI	RAATTY	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.