Rh6CG302900

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001980
Physical Location & Seq
Reverse (-)
48334290 .. 48338282
3993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG302900.1

Sequence Viewer

Length: 588 bp
ATGTCGAGCTCCACAATGAAGGCCCTCAGCTGCCGTGGCGCCGTTTGGTGTTGCGATGTCTCCAGAGACTCCTCACGCCTCATGATTGGTAGCGGCGACTACGCCGCAAAGCTCTGGAATGTTCAAACTGACGTGTCGTCGAGGATTTCAAGGATTATTGTGACAAGGAGGGGTTTGTCGGTGCATGTGGACTCGCTGTTCACTTCGGGTGGGTTTATTGAAGAAATGGATGTGTTGAAGCAAAGTGTGGTGGATGATGGGCTGAGATTGATTGCAAACCTGAATCTGCGGCGGATTGCGGTGATAGATGTCGGGGTTGATGGGATGTTGAGCATTGCAAAGGAGTGTCAGACACTGCAAGAGTTGGAGCTGCATTGCTGTGGGGAGTTGGCGTTGAAGAGGATTAGTGGGTTTAGGAACTTGCCGATTGTGAAGTTGATTGAGTGCGTGGATGGGTTTTACAGTGCGCATATTTCGGATATTGGGTTGACGATTTTGGCTAAGGGGTGCAGGAGGTTGGTGAAGCTTGAGCTTTGTGGGTGTGAAGGGAGCTATCATTGGGGGGGGGGGGGTGAGAAAGAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like Remorin_C

Protein Analysis

195

Amino Acids

21.26

Weight (kDa)

6.87

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EIF3I PF24805 12 - 44 6.5e-06 EIF3I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 468
AccB1I GGYRCC 1 cut(s) 38
AciI CCGC 5 cut(s) 93, 105, 289, 292, 299
AcyI GRCGYC 1 cut(s) 39
AflIII ACRYGT 1 cut(s) 132
AgsI TTSAA 5 cut(s) 125, 150, 221, 238, 397
AhdI GACNNNNNGTC 1 cut(s) 136
AjiI CACGTC 1 cut(s) 133
AloI GAACNNNNNNTCC 2 cut(s) 182, 214
AluBI AGCT 7 cut(s) 9, 30, 112, 370, 526, 532, 552
AluI AGCT 7 cut(s) 9, 30, 112, 370, 526, 532, 552
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 2 cut(s) 60, 64
AlwNI CAGNNNCTG 1 cut(s) 355
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 2 cut(s) 30, 370
AspLEI GCGC 2 cut(s) 41, 469
AspS9I GGNCC 1 cut(s) 22
AsuHPI GGTGA 3 cut(s) 313, 532, 584
BanI GGYRCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 11
BbvCI CCTCAGC 1 cut(s) 26
BbvI GCAGC 2 cut(s) 17, 357
BccI CCATC 3 cut(s) 251, 314, 446
BceAI ACGGC 2 cut(s) 18, 26
BcoDI GTCTC 2 cut(s) 60, 64
BfoI RGCGCY 1 cut(s) 42
BisI GCNGC 5 cut(s) 31, 94, 105, 290, 371
BlsI GCNGC 5 cut(s) 32, 95, 106, 291, 372
BmeRI GACNNNNNGTC 1 cut(s) 136
BmgBI CACGTC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 40
BpmI CTGGAG 1 cut(s) 46
Bpu10I CCTNAGC 2 cut(s) 26, 501
BpuEI CTTGAG 1 cut(s) 548
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bse3DI GCAATG 2 cut(s) 333, 373
BseDI CCNNGG 1 cut(s) 34
BseGI GGATG 4 cut(s) 235, 259, 330, 457
BseMI GCAATG 2 cut(s) 333, 373
BseMII CTCAG 2 cut(s) 40, 254
BseRI GAGGAG 1 cut(s) 61
BseXI GCAGC 2 cut(s) 17, 357
BsgI GTGCAG 1 cut(s) 529
BshFI GGCC 1 cut(s) 23
BshNI GGYRCC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 11
BsmAI GTCTC 2 cut(s) 60, 64
BsnI GGCC 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 11
BspACI CCGC 5 cut(s) 93, 105, 289, 292, 299
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 2 cut(s) 39, 255
BspHI TCATGA 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 40
BspT107I GGYRCC 1 cut(s) 38
BsrDI GCAATG 2 cut(s) 333, 373
BssECI CCNNGG 1 cut(s) 34
BssNI GRCGYC 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 464
Bst6I CTCTTC 1 cut(s) 392
BstACI GRCGYC 1 cut(s) 39
BstDEI CTNAG 3 cut(s) 26, 263, 501
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 4 cut(s) 235, 259, 330, 457
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 2 cut(s) 41, 469
BstMAI GTCTC 2 cut(s) 60, 64
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNSI RCATGY 1 cut(s) 188
BstV1I GCAGC 2 cut(s) 17, 357
BsuRI GGCC 1 cut(s) 23
BtgI CCRYGG 1 cut(s) 34
BtgZI GCGATG 1 cut(s) 69
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 4 cut(s) 235, 259, 330, 457
BtsI GCAGTG 1 cut(s) 353
BtsIMutI CAGTG 2 cut(s) 353, 469
CaiI CAGNNNCTG 1 cut(s) 355
CciI TCATGA 1 cut(s) 81
CfoI GCGC 2 cut(s) 41, 469
Cfr13I GGNCC 1 cut(s) 22
CviAII CATG 2 cut(s) 82, 185
DdeI CTNAG 3 cut(s) 26, 263, 501
DinI GGCGCC 1 cut(s) 40
DriI GACNNNNNGTC 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 392
Eam1105I GACNNNNNGTC 1 cut(s) 136
EarI CTCTTC 1 cut(s) 392
EciI GGCGGA 1 cut(s) 307
Ecl136II GAGCTC 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 9
EcoICRI GAGCTC 1 cut(s) 9
EcoO109I RGGNCCY 1 cut(s) 22
EcoT38I GRGCYC 1 cut(s) 11
EgeI GGCGCC 1 cut(s) 40
EheI GGCGCC 1 cut(s) 40
FaeI CATG 2 cut(s) 85, 188
FaiI YATR 4 cut(s) 83, 186, 471, 586
FatI CATG 2 cut(s) 81, 184
Fnu4HI GCNGC 5 cut(s) 31, 94, 105, 290, 371
FokI GGATG 4 cut(s) 242, 266, 337, 464
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 5 cut(s) 31, 94, 105, 290, 371
FspAI RTGCGCAY 1 cut(s) 468
FspI TGCGCA 1 cut(s) 468
GlaI GCGC 2 cut(s) 40, 468
GluI GCNGC 5 cut(s) 31, 94, 105, 290, 371
GsuI CTGGAG 1 cut(s) 46
HaeII RGCGCY 1 cut(s) 42
HaeIII GGCC 1 cut(s) 23
HhaI GCGC 2 cut(s) 41, 469
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 2 cut(s) 85, 188
Hin6I GCGC 2 cut(s) 39, 467
HinP1I GCGC 2 cut(s) 39, 467
HincII GTYRAC 1 cut(s) 489
HindII GTYRAC 1 cut(s) 489
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 3 cut(s) 68, 191, 283
HphI GGTGA 3 cut(s) 313, 532, 584
Hpy166II GTNNAC 3 cut(s) 190, 201, 489
Hpy188I TCNGA 2 cut(s) 351, 478
Hpy188III TCNNGA 3 cut(s) 63, 82, 115
Hpy8I GTNNAC 3 cut(s) 190, 201, 489
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 2 cut(s) 13, 539
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 6 cut(s) 184, 275, 338, 358, 373, 510
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 3 cut(s) 26, 263, 501
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 2 cut(s) 85, 188
HspAI GCGC 2 cut(s) 39, 467
KasI GGCGCC 1 cut(s) 38
LmnI GCTCC 3 cut(s) 14, 367, 549
LpnPI CCDG 4 cut(s) 76, 100, 293, 496
Lsp1109I GCAGC 2 cut(s) 17, 357
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 160
MboII GAAGA 2 cut(s) 233, 409
MhlI GDGCHC 1 cut(s) 11
Mly113I GGCGCC 1 cut(s) 39
MlyI GAGTC 2 cut(s) 62, 185
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 7 cut(s) 35, 82, 89, 135, 162, 393, 507
MslI CAYNNNNRTG 1 cut(s) 378
MspA1I CMGCKG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 36
NarI GGCGCC 1 cut(s) 39
NlaIII CATG 2 cut(s) 85, 188
NlaIV GGNNCC 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 160
NsbI TGCGCA 1 cut(s) 468
NspI RCATGY 1 cut(s) 188
PagI TCATGA 1 cut(s) 81
PfeI GAWTC 1 cut(s) 283
PkrI GCNGC 5 cut(s) 32, 95, 106, 291, 372
PleI GAGTC 2 cut(s) 62, 185
PluTI GGCGCC 1 cut(s) 42
PpsI GAGTC 2 cut(s) 62, 185
Psp124BI GAGCTC 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 1 cut(s) 22
PstNI CAGNNNCTG 1 cut(s) 355
PvuII CAGCTG 1 cut(s) 30
RseI CAYNNNNRTG 1 cut(s) 378
SacI GAGCTC 1 cut(s) 11
SatI GCNGC 5 cut(s) 31, 94, 105, 290, 371
Sau96I GGNCC 1 cut(s) 22
SchI GAGTC 2 cut(s) 62, 185
SduI GDGCHC 1 cut(s) 11
SfoI GGCGCC 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
SsiI CCGC 5 cut(s) 93, 105, 289, 292, 299
SspDI GGCGCC 1 cut(s) 38
SstI GAGCTC 1 cut(s) 11
TaaI ACNGT 1 cut(s) 464
TaiI ACGT 1 cut(s) 135
TaqI TCGA 2 cut(s) 5, 140
TauI GCSGC 3 cut(s) 96, 107, 292
TfiI GAWTC 1 cut(s) 283
TscAI CASTG 2 cut(s) 360, 469
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 2 cut(s) 30, 370
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 32
TspRI CASTG 2 cut(s) 360, 469
XceI RCATGY 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.