pycom01g19190

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0001980
Physical Location & Seq
Forward (+)
17974949 .. 17976853
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g19190.1

Sequence Viewer

Length: 1506 bp
ATGGGATACAGAGTGACAGCGGAAGACGACCCCGAAACCATGTCGTTACAGGCAGTGAAAGCGAACCCAAAGACCAGCCCTTTACCGTCGTCGAAGCGGCGGACGGCGAGCTGGTCAGACATCGGGCTCAAGAAGAACACCACCCCTCTCAAGAACCTGATATTCGCTATGCAGCTGGCTTCCCCCAAATCGAAACCCTCCCACGAGACCCTTATCCCCCCTTGCGAAAACATTGATCGGACTTCCGTGTTATCCGATGAAATTTTCCTCAAGATCCTCGCCAAGCTGCCGGAGTCGCAGCGGAAGCCTAGCTCCGTCCTCTGCAAGCGGTGGCTCAACCTCCACGGCCGCCTTGTACGGTCAATCAAGGTCTTGGACTGGAACTTTCTCCAATCTGGTCGGTTAATTTCTCGGTTTCCCGATCTGAATCAGGTGGACCTGCTAGCTGGGTCGTTGATTCCGGACCAAAATTCTGGAATTTTGTTGAGTTGTGGGATGTTTCCGGTGCGTACCGGTTCCGGGTTTTCACCGAATCAGCGAGGTTTGGAATCGAGTTTGCTTCCAGCTGAAGTTGTTGATAGAGGGCTTGACGGGTTGGCGACTGGGTGCCCCAACTTGCGGAAGCTTGTGGTGATTGGCGCTAGTGAATTGGGGCTGCTGAGTGTAGCAGAGGAGTGCCTCACATTGCAAGAACTGGAATTGCACAAGTGCAGCGACAATGTGCTGCGTGGGATTGCGGCGTGTGAGAATTTGCAGGTGTTGAAGCTGGTTGCAAATGTAGAGGAACTTTACAGTTCAGTGGTTTCAGATATCGGATTGACGATTTTAGCTCAAGGGTGTACTAGATTGGTAAAGCTGGAGCTTTGGGGATGTGAGGGAAGCTTTGATGGGATTAAGGCAATTGGGCAGTGTTGCCAAATGCTGGAGGAGCTGACTTTCTGCGATCATAGGATGGATGGTGGGTGGGTGGCCGCCCTATCGTACTGCGAAAATTTGAAGACTTTGAGGTTTCTGTCGTGTAAAAGGATTGAAACTGTTCCGGGGCCGGACGAGTATTTGGATGCTTGTCCGGCTCTGGAAAGGTTGCATTTGGAGAAATGTCAGCTGAGGGACAAGAAGGGTGTGGGAGCTTTATTTATGGTGTGTGGAGCCGCCAGGGAGATTGTTTTACAGGACTGTTGGGGATTGGAGAATGATATGTTCAGGCTAGCGAGCACTTGCAGGAGAGTGAGGTTCCTATCACTAGAAGGCTGCTCGGTGCTAACAACAGAGGGTCTGGAGTCTGTAATTCTTCCCTGGAAGGAGCTCGAATGTCTTCGAGTAGTGTCGTGCAAGAACTTAAAGGACAAGGAGATATCTCCTGCACTCGTAACCTTATTTTCTACTCTCAAAGAGCTGCAATGGAGACCGGAAACCAAATCTCTTCCCCCGTCAAGCATTATCGGAACCATCATAGGAAAGAAAGGCAGTAGATTTTTCAGGAAGAGTCGAAGACACGAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like Remorin_C

Protein Analysis

502

Amino Acids

55.5

Weight (kDa)

8.38

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 745
Acc36I ACCTGC 2 cut(s) 447, 745
AccB1I GGYRCC 1 cut(s) 606
AccB7I CCANNNNNTGG 1 cut(s) 922
AccIII TCCGGA 1 cut(s) 460
AclWI GGATC 1 cut(s) 268
AcoI YGGCCR 2 cut(s) 346, 969
AcsI RAATTY 5 cut(s) 261, 469, 477, 748, 991
AcuI CTGAAG 1 cut(s) 588
AfaI GTAC 4 cut(s) 357, 511, 841, 983
AfiI CCNNNNNNNGG 3 cut(s) 519, 618, 922
AgeI ACCGGT 1 cut(s) 512
AgsI TTSAA 3 cut(s) 763, 997, 1031
AjnI CCWGG 2 cut(s) 1154, 1295
Alw21I GWGCWC 2 cut(s) 1217, 1308
Alw26I GTCTC 2 cut(s) 200, 1399
AlwI GGATC 1 cut(s) 268
Aor13HI TCCGGA 1 cut(s) 460
AoxI GGCC 3 cut(s) 346, 969, 1043
ApeKI GCWGC 8 cut(s) 172, 286, 298, 655, 711, 724, 1251, 1396
ApoI RAATTY 5 cut(s) 261, 469, 477, 748, 991
ArsI GACNNNNNNTTYG 1 cut(s) 1485
AsiGI ACCGGT 1 cut(s) 512
Asp700I GAANNNNTTC 2 cut(s) 1035, 1314
AspLEI GCGC 1 cut(s) 641
AspS9I GGNCC 3 cut(s) 436, 463, 1043
AsuC2I CCSGG 2 cut(s) 520, 1041
AsuHPI GGTGA 2 cut(s) 519, 643
AsuNHI GCTAGC 2 cut(s) 442, 1207
AvaII GGWCC 2 cut(s) 436, 463
BaeGI GKGCMC 1 cut(s) 611
BanI GGYRCC 1 cut(s) 606
BanII GRGCYC 2 cut(s) 129, 1308
BauI CACGAG 2 cut(s) 203, 1496
BbsI GAAGAC 4 cut(s) 30, 1004, 1307, 1498
Bbv12I GWGCWC 2 cut(s) 1217, 1308
BbvCI CCTCAGC 1 cut(s) 1106
BbvI GCAGC 8 cut(s) 184, 273, 310, 642, 711, 723, 1238, 1383
BccI CCATC 4 cut(s) 881, 946, 950, 1457
BceAI ACGGC 2 cut(s) 120, 361
BciT130I CCWGG 2 cut(s) 1156, 1297
BcnI CCSGG 2 cut(s) 520, 1041
BcoDI GTCTC 2 cut(s) 200, 1399
BfaI CTAG 6 cut(s) 309, 443, 642, 843, 1208, 1244
BfoI RGCGCY 1 cut(s) 642
BfuAI ACCTGC 2 cut(s) 447, 745
Bme1390I CCNGG 4 cut(s) 520, 1041, 1156, 1297
Bme18I GGWCC 2 cut(s) 436, 463
BmgT120I GGNCC 3 cut(s) 436, 463, 1043
BmiI GGNNCC 6 cut(s) 517, 608, 1044, 1150, 1235, 1447
BmrFI CCNGG 4 cut(s) 520, 1041, 1156, 1297
BmrI ACTGGG 1 cut(s) 612
BmsI GCATC 1 cut(s) 1051
BmtI GCTAGC 2 cut(s) 446, 1211
BmuI ACTGGG 1 cut(s) 612
BpiI GAAGAC 4 cut(s) 30, 1004, 1307, 1498
BpmI CTGGAG 3 cut(s) 878, 944, 1298
Bpu10I CCTNAGC 1 cut(s) 1106
BpuEI CTTGAG 4 cut(s) 113, 134, 254, 816
BpuMI CCSGG 2 cut(s) 520, 1041
BsaBI GATNNNNATC 1 cut(s) 426
BsaI GGTCTC 2 cut(s) 200, 1399
BsaJI CCNNGG 4 cut(s) 343, 1040, 1155, 1295
BsaWI WCCGGW 4 cut(s) 460, 502, 512, 1408
Bsc4I CCNNNNNNNGG 3 cut(s) 519, 618, 922
Bse118I RCCGGY 1 cut(s) 512
Bse1I ACTGG 3 cut(s) 383, 607, 699
Bse3DI GCAATG 2 cut(s) 683, 1406
Bse8I GATNNNNATC 1 cut(s) 426
BseAI TCCGGA 1 cut(s) 460
BseBI CCWGG 2 cut(s) 1156, 1297
BseDI CCNNGG 4 cut(s) 343, 1040, 1155, 1295
BseGI GGATG 5 cut(s) 501, 875, 957, 961, 1066
BseJI GATNNNNATC 1 cut(s) 426
BseLI CCNNNNNNNGG 3 cut(s) 519, 618, 922
BseMI GCAATG 2 cut(s) 683, 1406
BseMII CTCAG 2 cut(s) 650, 1097
BseNI ACTGG 3 cut(s) 383, 607, 699
BseRI GAGGAG 2 cut(s) 686, 941
BseSI GKGCMC 1 cut(s) 611
BseX3I CGGCCG 1 cut(s) 346
BseXI GCAGC 8 cut(s) 184, 273, 310, 642, 711, 723, 1238, 1383
BseYI CCCAGC 1 cut(s) 446
BsgI GTGCAG 2 cut(s) 730, 1347
Bsh1285I CGRYCG 1 cut(s) 349
BshFI GGCC 3 cut(s) 348, 971, 1045
BshNI GGYRCC 1 cut(s) 606
BshTI ACCGGT 1 cut(s) 512
BsiEI CGRYCG 1 cut(s) 349
BsiHKAI GWGCWC 2 cut(s) 1217, 1308
BsiSI CCGG 9 cut(s) 290, 461, 503, 513, 519, 1040, 1046, 1070, 1409
BslFI GGGAC 1 cut(s) 1124
BslI CCNNNNNNNGG 3 cut(s) 519, 618, 922
BsmAI GTCTC 2 cut(s) 200, 1399
BsmFI GGGAC 1 cut(s) 1124
BsnI GGCC 3 cut(s) 348, 971, 1045
Bso31I GGTCTC 2 cut(s) 200, 1399
Bsp1286I GDGCHC 4 cut(s) 129, 611, 1217, 1308
Bsp13I TCCGGA 1 cut(s) 460
Bsp143I GATC 4 cut(s) 235, 273, 421, 943
BspANI GGCC 3 cut(s) 348, 971, 1045
BspCNI CTCAG 2 cut(s) 651, 1098
BspEI TCCGGA 1 cut(s) 460
BspLI GGNNCC 6 cut(s) 517, 608, 1044, 1150, 1235, 1447
BspMI ACCTGC 2 cut(s) 447, 745
BspOI GCTAGC 2 cut(s) 446, 1211
BspPI GGATC 1 cut(s) 268
BspT107I GGYRCC 1 cut(s) 606
BspTNI GGTCTC 2 cut(s) 200, 1399
BsrDI GCAATG 2 cut(s) 683, 1406
BsrFI RCCGGY 1 cut(s) 512
BsrI ACTGG 3 cut(s) 383, 607, 699
BssAI RCCGGY 1 cut(s) 512
BssECI CCNNGG 4 cut(s) 343, 1040, 1155, 1295
BssMI GATC 4 cut(s) 235, 273, 421, 943
BssSI CACGAG 2 cut(s) 203, 1496
Bst2BI CACGAG 2 cut(s) 203, 1496
Bst2UI CCWGG 2 cut(s) 1156, 1297
Bst4CI ACNGT 5 cut(s) 87, 360, 794, 1036, 1178
Bst6I CTCTTC 2 cut(s) 1428, 1478
BstC8I GCNNGC 6 cut(s) 109, 177, 326, 444, 1209, 1213
BstDEI CTNAG 2 cut(s) 659, 1106
BstDSI CCRYGG 1 cut(s) 343
BstF5I GGATG 5 cut(s) 501, 875, 957, 961, 1066
BstH2I RGCGCY 1 cut(s) 642
BstHHI GCGC 1 cut(s) 641
BstKTI GATC 4 cut(s) 238, 276, 424, 946
BstMAI GTCTC 2 cut(s) 200, 1399
BstMBI GATC 4 cut(s) 235, 273, 421, 943
BstMCI CGRYCG 1 cut(s) 349
BstMWI GCNNNNNNNGC 5 cut(s) 59, 295, 304, 928, 1070
BstNI CCWGG 2 cut(s) 1156, 1297
BstSCI CCNGG 4 cut(s) 518, 1039, 1154, 1295
BstSLI GKGCMC 1 cut(s) 611
BstV1I GCAGC 8 cut(s) 184, 273, 310, 642, 711, 723, 1238, 1383
BstV2I GAAGAC 4 cut(s) 30, 1004, 1307, 1498
BstX2I RGATCY 1 cut(s) 273
BstXI CCANNNNNNTGG 1 cut(s) 473
BstYI RGATCY 1 cut(s) 273
BstZI CGGCCG 1 cut(s) 346
BsuRI GGCC 3 cut(s) 348, 971, 1045
BtgI CCRYGG 1 cut(s) 343
BtsCI GGATG 5 cut(s) 501, 875, 957, 961, 1066
BtsI GCAGTG 2 cut(s) 60, 914
BtsIMutI CAGTG 3 cut(s) 60, 804, 914
BveI ACCTGC 2 cut(s) 447, 745
Cac8I GCNNGC 6 cut(s) 109, 177, 326, 444, 1209, 1213
CfoI GCGC 1 cut(s) 641
Cfr10I RCCGGY 1 cut(s) 512
Cfr13I GGNCC 3 cut(s) 436, 463, 1043
Csp6I GTAC 4 cut(s) 356, 510, 840, 982
CspAI ACCGGT 1 cut(s) 512
CviAII CATG 1 cut(s) 40
CviQI GTAC 4 cut(s) 356, 510, 840, 982
DdeI CTNAG 2 cut(s) 659, 1106
DpnI GATC 4 cut(s) 237, 275, 423, 945
DpnII GATC 4 cut(s) 235, 273, 421, 943
EaeI YGGCCR 2 cut(s) 346, 969
EagI CGGCCG 1 cut(s) 346
Eam1104I CTCTTC 2 cut(s) 1428, 1478
EarI CTCTTC 2 cut(s) 1428, 1478
EciI GGCGGA 1 cut(s) 115
Ecl136II GAGCTC 1 cut(s) 1306
EclXI CGGCCG 1 cut(s) 346
Eco24I GRGCYC 2 cut(s) 129, 1308
Eco31I GGTCTC 2 cut(s) 200, 1399
Eco32I GATATC 2 cut(s) 811, 1356
Eco47I GGWCC 2 cut(s) 436, 463
Eco52I CGGCCG 1 cut(s) 346
Eco53kI GAGCTC 1 cut(s) 1306
Eco57I CTGAAG 1 cut(s) 588
EcoICRI GAGCTC 1 cut(s) 1306
EcoRII CCWGG 2 cut(s) 1154, 1295
EcoRV GATATC 2 cut(s) 811, 1356
EcoT38I GRGCYC 2 cut(s) 129, 1308
FaeI CATG 1 cut(s) 43
FaiI YATR 6 cut(s) 41, 170, 948, 1139, 1199, 1454
FaqI GGGAC 1 cut(s) 1124
FatI CATG 1 cut(s) 39
FokI GGATG 5 cut(s) 508, 882, 964, 968, 1073
FriOI GRGCYC 2 cut(s) 129, 1308
FspBI CTAG 6 cut(s) 309, 443, 642, 843, 1208, 1244
GlaI GCGC 1 cut(s) 640
GsaI CCCAGC 1 cut(s) 450
GsuI CTGGAG 3 cut(s) 878, 944, 1298
HaeII RGCGCY 1 cut(s) 642
HaeIII GGCC 3 cut(s) 348, 971, 1045
HapII CCGG 9 cut(s) 290, 461, 503, 513, 519, 1040, 1046, 1070, 1409
HhaI GCGC 1 cut(s) 641
Hin1II CATG 1 cut(s) 43
Hin6I GCGC 1 cut(s) 639
HinP1I GCGC 1 cut(s) 639
HindIII AAGCTT 2 cut(s) 623, 880
HinfI GANTC 7 cut(s) 293, 427, 457, 532, 548, 1280, 1486
HpaII CCGG 9 cut(s) 290, 461, 503, 513, 519, 1040, 1046, 1070, 1409
HphI GGTGA 2 cut(s) 519, 643
Hpy166II GTNNAC 2 cut(s) 436, 840
Hpy188I TCNGA 7 cut(s) 118, 240, 256, 426, 808, 815, 1445
Hpy188III TCNNGA 9 cut(s) 130, 151, 271, 419, 461, 474, 1076, 1277, 1480
Hpy8I GTNNAC 2 cut(s) 436, 840
Hpy99I CGWCG 2 cut(s) 91, 94
HpyAV CCTTC 3 cut(s) 1111, 1241, 1294
HpyCH4III ACNGT 5 cut(s) 87, 360, 794, 1036, 1178
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 295, 304, 928, 1070
HpyF3I CTNAG 2 cut(s) 659, 1106
Hsp92II CATG 1 cut(s) 43
HspAI GCGC 1 cut(s) 639
Kpn2I TCCGGA 1 cut(s) 460
Kzo9I GATC 4 cut(s) 235, 273, 421, 943
LmnI GCTCC 6 cut(s) 317, 859, 928, 1127, 1148, 1303
Lsp1109I GCAGC 8 cut(s) 184, 273, 310, 642, 711, 723, 1238, 1383
LweI GCATC 1 cut(s) 1051
MaeI CTAG 6 cut(s) 309, 443, 642, 843, 1208, 1244
MaeIII GTNAC 3 cut(s) 13, 45, 1369
MalI GATC 4 cut(s) 237, 275, 423, 945
MboI GATC 4 cut(s) 235, 273, 421, 943
MboII GAAGA 8 cut(s) 35, 145, 1009, 1283, 1307, 1415, 1495, 1503
MfeI CAATTG 1 cut(s) 900
MflI RGATCY 1 cut(s) 273
MhlI GDGCHC 4 cut(s) 129, 611, 1217, 1308
MlyI GAGTC 3 cut(s) 302, 1289, 1495
MroI TCCGGA 1 cut(s) 460
MroXI GAANNNNTTC 2 cut(s) 1035, 1314
MseI TTAA 3 cut(s) 404, 894, 1340
MspA1I CMGCKG 5 cut(s) 20, 175, 301, 566, 1105
MspI CCGG 9 cut(s) 290, 461, 503, 513, 519, 1040, 1046, 1070, 1409
MspR9I CCNGG 4 cut(s) 520, 1041, 1156, 1297
MunI CAATTG 1 cut(s) 900
MvaI CCWGG 2 cut(s) 1156, 1297
MwoI GCNNNNNNNGC 5 cut(s) 59, 295, 304, 928, 1070
NciI CCSGG 2 cut(s) 520, 1041
NdeII GATC 4 cut(s) 235, 273, 421, 943
NheI GCTAGC 2 cut(s) 442, 1207
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 6 cut(s) 517, 608, 1044, 1150, 1235, 1447
NmuCI GTSAC 1 cut(s) 13
PaqCI CACCTGC 1 cut(s) 745
PdmI GAANNNNTTC 2 cut(s) 1035, 1314
PfeI GAWTC 4 cut(s) 427, 457, 532, 548
PflMI CCANNNNNTGG 1 cut(s) 922
PinAI ACCGGT 1 cut(s) 512
PleI GAGTC 3 cut(s) 301, 1288, 1494
PpsI GAGTC 3 cut(s) 301, 1288, 1494
Psp124BI GAGCTC 1 cut(s) 1308
Psp6I CCWGG 2 cut(s) 1154, 1295
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 2 cut(s) 1154, 1295
PspN4I GGNNCC 6 cut(s) 517, 608, 1044, 1150, 1235, 1447
PspPI GGNCC 3 cut(s) 436, 463, 1043
PsuI RGATCY 1 cut(s) 273
PvuII CAGCTG 3 cut(s) 175, 566, 1105
RsaI GTAC 4 cut(s) 357, 511, 841, 983
RsaNI GTAC 4 cut(s) 356, 510, 840, 982
SacI GAGCTC 1 cut(s) 1308
SaqAI TTAA 3 cut(s) 404, 894, 1340
Sau3AI GATC 4 cut(s) 235, 273, 421, 943
Sau96I GGNCC 3 cut(s) 436, 463, 1043
SchI GAGTC 3 cut(s) 302, 1289, 1495
ScrFI CCNGG 4 cut(s) 520, 1041, 1156, 1297
SduI GDGCHC 4 cut(s) 129, 611, 1217, 1308
SfaNI GCATC 1 cut(s) 1051
SinI GGWCC 2 cut(s) 436, 463
SmlI CTYRAG 4 cut(s) 128, 149, 269, 831
SmoI CTYRAG 4 cut(s) 128, 149, 269, 831
SspMI CTAG 6 cut(s) 309, 443, 642, 843, 1208, 1244
SstI GAGCTC 1 cut(s) 1308
StyD4I CCNGG 4 cut(s) 518, 1039, 1154, 1295
TaaI ACNGT 5 cut(s) 87, 360, 794, 1036, 1178
TaqI TCGA 6 cut(s) 92, 191, 551, 1308, 1318, 1489
TatI WGTACW 1 cut(s) 839
TauI GCSGC 5 cut(s) 100, 351, 740, 974, 1154
TfiI GAWTC 4 cut(s) 427, 457, 532, 548
Tru1I TTAA 3 cut(s) 404, 894, 1340
Tru9I TTAA 3 cut(s) 404, 894, 1340
TscAI CASTG 3 cut(s) 60, 804, 914
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 8 cut(s) 172, 286, 298, 655, 711, 724, 1251, 1396
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 273
TspGWI ACGGA 2 cut(s) 235, 304
TspRI CASTG 3 cut(s) 60, 804, 914
Van91I CCANNNNNTGG 1 cut(s) 922
VpaK11BI GGWCC 2 cut(s) 436, 463
XapI RAATTY 5 cut(s) 261, 469, 477, 748, 991
XmnI GAANNNNTTC 2 cut(s) 1035, 1314
XspI CTAG 6 cut(s) 309, 443, 642, 843, 1208, 1244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.