AT5G51380

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001980
Physical Location & Seq
Forward (+)
20875832 .. 20877989
2158 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G51380.1

Sequence Viewer

Length: 1440 bp
ATGACGTTTAGGGAGAAAATGCCGACGAGTCCTAAATCGCCTCTGAGAAGACGACGTTCGAGCTGGACCGGTACATGGTTAAACCATCAGACGACGTCGTTTAAGCAAGCAGTCTCCGCCGTTATTCAAGCTCAATCACCAAGATCCAGGTTTAAATCCCTATCTTCTGATTTCTCCGACGTCGATCGAACTCTTTCGTTGTCAGATTCTCTTCTTCTCAAGATCCTTGAGAAGCTTCCTGAATCTCAGAACGAAGATGTTTCACTCGTGTGTAAACGGTGGTTGAGTGTTCAGGGACGGCGTTTACGGAGTATGAAGGTTTTTGATTGGGAATTTTTATTGTCTGGGAGGCTTGTTTCGAGGTTTCCTAAGCTTACGAGTGTTGATTTGGTTAACGCGTGTTTCAATCCGTCGAGCAATTCAGGGATTTTGCTATGTCATACGTCGATTTCGTTTCATGTATCAACCGATTCGTCGTTGAATTTGAATTTTGTTGAGGAGAGTCTGTTGGATAATGAAATGGTTGATAAAGGGCTTAGGGTTTTAGGAAGAGGGAGTTTTGATTTGATTAAGCTTGTAGTGATTAATGCTACTGAATTGGGATTGCTGAGTTTAGCTGAGGATTGTTCGGATTTGCAGGAGTTAGAGTTGCATAAGTGTAGCGATAATCTCTTGCGTGGTATTGCTGCTTGTGAGAATCTGAGGGGATTGAGATTGGTTGGAAGTGTTGATGGATTGTATAGTTCATCGGTTTCTGATATTGGTTTGACGATTTTAGCACAAGGGTGTAAGAGATTGGTGAAGCTTGAGCTTAGTGGTTGTGAAGGTAGTTTTGATGGGATTAAAGCAATTGGGCAATGTTGTGAAGTGCTTGAGGAGCTGAGTATTTGTGATCATAGAATGGATGATGGTTGGATAGCTGCGCTTTCGTATTTTGAGAGTTTGAAGACTTTGTTGATTTCGTCTTGTAGAAAGATAGATTCTAGTCCTGGACCGGGAAAGTTGCTGGGATCTTGTCCAGCTCTGGAGAGTTTGCAACTCAGGAGGTGTTGTTTGAATGACAAGGAGGGGATGAGAGCGTTGTTTAAGGTGTGTGATGGAGTAACTAAGGTTAATATTCAGGATTGTTGGGGATTGGATGATGATTCTTTCAGCTTGGCTAAAGCTTTCAGGAGGGTGCGGTTTTTATCTTTGGAAGGATGCTCAATCCTAACAACAAGCGGTTTAGAGTCAGTAATTCTACACTGGGAAGAGCTTGAGAGCATGAGAGTAGTATCATGTAAGAACATAAAAGACAGCGAAATTTCAGCCGCACTCTCGTCTTTGTTCTCCCTTCTCAAAGAACTAACGTGGAGACCGGACACAAGGTCTCATCTCTCATCCAGTCTTGAAGGTACCGGAATTGGTAAGAGAGGTAGCAAATTCTTCAAGAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like Remorin_C

Protein Analysis

479

Amino Acids

53.15

Weight (kDa)

8.2

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 98, 183
Acc65I GGTACC 1 cut(s) 1394
AccB1I GGYRCC 1 cut(s) 1394
AccII CGCG 1 cut(s) 398
AciI CCGC 4 cut(s) 117, 1180, 1221, 1311
AclWI GGATC 3 cut(s) 138, 217, 1018
AcsI RAATTY 5 cut(s) 332, 481, 487, 1302, 1421
AcyI GRCGYC 2 cut(s) 95, 180
AfaI GTAC 2 cut(s) 73, 1396
AfiI CCNNNNNNNGG 2 cut(s) 75, 995
AflIII ACRYGT 1 cut(s) 396
AgeI ACCGGT 1 cut(s) 68
AgsI TTSAA 8 cut(s) 128, 406, 481, 487, 946, 1057, 1391, 1429
AhdI GACNNNNNGTC 1 cut(s) 1366
AjnI CCWGG 2 cut(s) 146, 988
AleI CACNNNNGTG 2 cut(s) 268, 784
Alw26I GTCTC 3 cut(s) 118, 1348, 1374
AlwI GGATC 3 cut(s) 138, 217, 1018
ApeKI GCWGC 2 cut(s) 686, 920
ApoI RAATTY 5 cut(s) 332, 481, 487, 1302, 1421
AseI ATTAAT 1 cut(s) 585
AsiGI ACCGGT 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 193
Asp718I GGTACC 1 cut(s) 1394
AspLEI GCGC 1 cut(s) 925
AspS9I GGNCC 2 cut(s) 66, 992
AsuC2I CCSGG 1 cut(s) 996
AsuHPI GGTGA 2 cut(s) 129, 811
AvaII GGWCC 2 cut(s) 66, 992
BanI GGYRCC 1 cut(s) 1394
BauI CACGAG 1 cut(s) 266
BbsI GAAGAC 2 cut(s) 55, 953
BbvCI CCTCAGC 1 cut(s) 618
BbvI GCAGC 2 cut(s) 673, 907
BccI CCATC 5 cut(s) 93, 725, 830, 902, 1091
BceAI ACGGC 2 cut(s) 104, 314
BciT130I CCWGG 2 cut(s) 148, 990
BclI TGATCA 1 cut(s) 892
BcnI CCSGG 1 cut(s) 996
BcoDI GTCTC 3 cut(s) 118, 1348, 1374
BfaI CTAG 1 cut(s) 984
BisI GCNGC 3 cut(s) 687, 921, 1311
BlsI GCNGC 3 cut(s) 688, 922, 1312
Bme1390I CCNGG 3 cut(s) 148, 990, 996
Bme18I GGWCC 2 cut(s) 66, 992
BmeRI GACNNNNNGTC 1 cut(s) 1366
BmgT120I GGNCC 2 cut(s) 66, 992
BmiI GGNNCC 1 cut(s) 1396
BmrFI CCNGG 3 cut(s) 148, 990, 996
BmrI ACTGGG 1 cut(s) 1255
BmsI GCATC 1 cut(s) 1190
BmuI ACTGGG 1 cut(s) 1255
BpiI GAAGAC 2 cut(s) 55, 953
BpmI CTGGAG 1 cut(s) 1046
Bpu10I CCTNAGC 3 cut(s) 369, 536, 618
BpuEI CTTGAG 5 cut(s) 203, 248, 827, 893, 1277
BpuMI CCSGG 1 cut(s) 996
BsaHI GRCGYC 2 cut(s) 95, 180
BsaI GGTCTC 2 cut(s) 1348, 1374
BsaWI WCCGGW 3 cut(s) 68, 1357, 1397
BsaXI ACNNNNNCTCC 6 cut(s) 491, 521, 632, 662, 1036, 1066
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 995
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 1250, 1383
Bse3DI GCAATG 1 cut(s) 863
BseBI CCWGG 2 cut(s) 148, 990
BseGI GGATG 5 cut(s) 910, 1077, 1144, 1205, 1379
BseLI CCNNNNNNNGG 2 cut(s) 75, 995
BseMI GCAATG 1 cut(s) 863
BseMII CTCAG 7 cut(s) 35, 260, 599, 609, 692, 872, 1054
BseNI ACTGG 2 cut(s) 1250, 1383
BseRI GAGGAG 2 cut(s) 512, 890
BseXI GCAGC 2 cut(s) 673, 907
BseYI CCCAGC 1 cut(s) 1006
Bsh1236I CGCG 1 cut(s) 398
Bsh1285I CGRYCG 1 cut(s) 187
BshNI GGYRCC 1 cut(s) 1394
BshTI ACCGGT 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 187
BsiSI CCGG 4 cut(s) 69, 995, 1358, 1398
BslFI GGGAC 1 cut(s) 309
BslI CCNNNNNNNGG 2 cut(s) 75, 995
BsmAI GTCTC 3 cut(s) 118, 1348, 1374
BsmFI GGGAC 1 cut(s) 309
Bso31I GGTCTC 2 cut(s) 1348, 1374
Bsp143I GATC 5 cut(s) 143, 184, 222, 892, 1010
BspACI CCGC 4 cut(s) 117, 1180, 1221, 1311
BspCNI CTCAG 7 cut(s) 36, 259, 600, 610, 693, 873, 1053
BspFNI CGCG 1 cut(s) 398
BspLI GGNNCC 1 cut(s) 1396
BspPI GGATC 3 cut(s) 138, 217, 1018
BspQI GCTCTTC 1 cut(s) 1245
BspT107I GGYRCC 1 cut(s) 1394
BspTNI GGTCTC 2 cut(s) 1348, 1374
BsrDI GCAATG 1 cut(s) 863
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 2 cut(s) 1250, 1383
BssAI RCCGGY 1 cut(s) 68
BssMI GATC 5 cut(s) 143, 184, 222, 892, 1010
BssNI GRCGYC 2 cut(s) 95, 180
BssSI CACGAG 1 cut(s) 266
Bst2BI CACGAG 1 cut(s) 266
Bst2UI CCWGG 2 cut(s) 148, 990
Bst4CI ACNGT 1 cut(s) 279
Bst6I CTCTTC 4 cut(s) 216, 544, 1245, 1427
BstACI GRCGYC 2 cut(s) 95, 180
BstC8I GCNNGC 1 cut(s) 108
BstF5I GGATG 5 cut(s) 910, 1077, 1144, 1205, 1379
BstFNI CGCG 1 cut(s) 398
BstHHI GCGC 1 cut(s) 925
BstKTI GATC 5 cut(s) 146, 187, 225, 895, 1013
BstMAI GTCTC 3 cut(s) 118, 1348, 1374
BstMBI GATC 5 cut(s) 143, 184, 222, 892, 1010
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 2 cut(s) 116, 877
BstNI CCWGG 2 cut(s) 148, 990
BstSCI CCNGG 3 cut(s) 146, 988, 994
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 2 cut(s) 673, 907
BstV2I GAAGAC 2 cut(s) 55, 953
BstX2I RGATCY 3 cut(s) 143, 222, 1010
BstYI RGATCY 3 cut(s) 143, 222, 1010
BtsCI GGATG 5 cut(s) 910, 1077, 1144, 1205, 1379
BtsIMutI CAGTG 1 cut(s) 1243
Cac8I GCNNGC 1 cut(s) 108
CfoI GCGC 1 cut(s) 925
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 66, 992
Csp6I GTAC 2 cut(s) 72, 1395
CspAI ACCGGT 1 cut(s) 68
CviAII CATG 4 cut(s) 75, 458, 1264, 1278
CviQI GTAC 2 cut(s) 72, 1395
DpnI GATC 5 cut(s) 145, 186, 224, 894, 1012
DpnII GATC 5 cut(s) 143, 184, 222, 892, 1010
DraI TTTAAA 1 cut(s) 154
DriI GACNNNNNGTC 1 cut(s) 1366
Eam1104I CTCTTC 4 cut(s) 216, 544, 1245, 1427
Eam1105I GACNNNNNGTC 1 cut(s) 1366
EarI CTCTTC 4 cut(s) 216, 544, 1245, 1427
EciI GGCGGA 1 cut(s) 106
Eco31I GGTCTC 2 cut(s) 1348, 1374
Eco47I GGWCC 2 cut(s) 66, 992
EcoRII CCWGG 2 cut(s) 146, 988
FaeI CATG 4 cut(s) 78, 461, 1267, 1281
FaqI GGGAC 1 cut(s) 309
FatI CATG 4 cut(s) 74, 457, 1263, 1277
FbaI TGATCA 1 cut(s) 892
Fnu4HI GCNGC 3 cut(s) 687, 921, 1311
FokI GGATG 5 cut(s) 917, 1084, 1151, 1212, 1366
Fsp4HI GCNGC 3 cut(s) 687, 921, 1311
FspBI CTAG 1 cut(s) 984
GlaI GCGC 1 cut(s) 924
GluI GCNGC 3 cut(s) 687, 921, 1311
GsaI CCCAGC 1 cut(s) 1010
GsuI CTGGAG 1 cut(s) 1046
HapII CCGG 4 cut(s) 69, 995, 1358, 1398
HhaI GCGC 1 cut(s) 925
Hin1I GRCGYC 2 cut(s) 95, 180
Hin1II CATG 4 cut(s) 78, 461, 1267, 1281
Hin6I GCGC 1 cut(s) 923
HinP1I GCGC 1 cut(s) 923
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HindIII AAGCTT 5 cut(s) 233, 371, 572, 803, 1164
HinfI GANTC 9 cut(s) 28, 206, 242, 470, 502, 697, 980, 1145, 1229
HpaI GTTAAC 1 cut(s) 394
HpaII CCGG 4 cut(s) 69, 995, 1358, 1398
HphI GGTGA 2 cut(s) 129, 811
Hpy166II GTNNAC 3 cut(s) 275, 305, 394
Hpy188I TCNGA 9 cut(s) 45, 90, 169, 178, 205, 249, 631, 702, 757
Hpy188III TCNNGA 8 cut(s) 220, 239, 1025, 1042, 1121, 1171, 1388, 1429
Hpy8I GTNNAC 3 cut(s) 275, 305, 394
Hpy99I CGWCG 9 cut(s) 28, 57, 97, 100, 182, 185, 415, 448, 478
HpyAV CCTTC 5 cut(s) 310, 818, 1190, 1343, 1385
HpyCH4III ACNGT 1 cut(s) 279
HpyCH4IV ACGT 6 cut(s) 5, 55, 95, 180, 443, 1349
HpyCH4V TGCA 3 cut(s) 637, 652, 1036
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 877
HpySE526I ACGT 6 cut(s) 5, 55, 95, 180, 443, 1349
Hsp92I GRCGYC 2 cut(s) 95, 180
Hsp92II CATG 4 cut(s) 78, 461, 1267, 1281
HspAI GCGC 1 cut(s) 923
KpnI GGTACC 1 cut(s) 1398
Ksp22I TGATCA 1 cut(s) 892
KspAI GTTAAC 1 cut(s) 394
Kzo9I GATC 5 cut(s) 143, 184, 222, 892, 1010
LguI GCTCTTC 1 cut(s) 1245
LmnI GCTCC 1 cut(s) 877
Lsp1109I GCAGC 2 cut(s) 673, 907
LweI GCATC 1 cut(s) 1190
MaeI CTAG 1 cut(s) 984
MaeII ACGT 6 cut(s) 5, 55, 95, 180, 443, 1349
MaeIII GTNAC 1 cut(s) 1102
MalI GATC 5 cut(s) 145, 186, 224, 894, 1012
MboI GATC 5 cut(s) 143, 184, 222, 892, 1010
MboII GAAGA 9 cut(s) 60, 156, 203, 206, 266, 561, 958, 1262, 1417
MfeI CAATTG 1 cut(s) 849
MflI RGATCY 3 cut(s) 143, 222, 1010
MluI ACGCGT 1 cut(s) 396
MlyI GAGTC 3 cut(s) 37, 511, 1238
MmeI TCCRAC 4 cut(s) 201, 489, 700, 893
MroXI GAANNNNTTC 1 cut(s) 193
MseI TTAA 9 cut(s) 80, 102, 153, 393, 570, 585, 843, 1086, 1113
MslI CAYNNNNRTG 2 cut(s) 268, 784
MspI CCGG 4 cut(s) 69, 995, 1358, 1398
MspR9I CCNGG 3 cut(s) 148, 990, 996
MunI CAATTG 1 cut(s) 849
MvaI CCWGG 2 cut(s) 148, 990
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 2 cut(s) 116, 877
NciI CCSGG 1 cut(s) 996
NdeII GATC 5 cut(s) 143, 184, 222, 892, 1010
NlaIII CATG 4 cut(s) 78, 461, 1267, 1281
NlaIV GGNNCC 1 cut(s) 1396
OliI CACNNNNGTG 2 cut(s) 268, 784
PciSI GCTCTTC 1 cut(s) 1245
PcsI WCGNNNNNNNCGW 1 cut(s) 449
PdmI GAANNNNTTC 1 cut(s) 193
PfeI GAWTC 6 cut(s) 206, 242, 470, 697, 980, 1145
PflFI GACNNNGTC 1 cut(s) 94
PfoI TCCNGGA 1 cut(s) 988
PinAI ACCGGT 1 cut(s) 68
PkrI GCNGC 3 cut(s) 688, 922, 1312
Ple19I CGATCG 1 cut(s) 187
PleI GAGTC 3 cut(s) 36, 510, 1237
PpsI GAGTC 3 cut(s) 36, 510, 1237
PshBI ATTAAT 1 cut(s) 585
Psp6I CCWGG 2 cut(s) 146, 988
PspFI CCCAGC 1 cut(s) 1006
PspGI CCWGG 2 cut(s) 146, 988
PspN4I GGNNCC 1 cut(s) 1396
PspPI GGNCC 2 cut(s) 66, 992
PsuI RGATCY 3 cut(s) 143, 222, 1010
PsyI GACNNNGTC 1 cut(s) 94
PvuI CGATCG 1 cut(s) 187
RsaI GTAC 2 cut(s) 73, 1396
RsaNI GTAC 2 cut(s) 72, 1395
RseI CAYNNNNRTG 2 cut(s) 268, 784
SapI GCTCTTC 1 cut(s) 1245
SaqAI TTAA 9 cut(s) 80, 102, 153, 393, 570, 585, 843, 1086, 1113
SatI GCNGC 3 cut(s) 687, 921, 1311
Sau3AI GATC 5 cut(s) 143, 184, 222, 892, 1010
Sau96I GGNCC 2 cut(s) 66, 992
SchI GAGTC 3 cut(s) 37, 511, 1238
ScrFI CCNGG 3 cut(s) 148, 990, 996
SfaNI GCATC 1 cut(s) 1190
SinI GGWCC 2 cut(s) 66, 992
SmiMI CAYNNNNRTG 2 cut(s) 268, 784
SmlI CTYRAG 5 cut(s) 218, 227, 806, 872, 1256
SmoI CTYRAG 5 cut(s) 218, 227, 806, 872, 1256
SsiI CCGC 4 cut(s) 117, 1180, 1221, 1311
SspI AATATT 1 cut(s) 1117
SspMI CTAG 1 cut(s) 984
StyD4I CCNGG 3 cut(s) 146, 988, 994
TaaI ACNGT 1 cut(s) 279
TaiI ACGT 6 cut(s) 8, 58, 98, 183, 446, 1352
TaqI TCGA 6 cut(s) 59, 183, 187, 359, 413, 446
TauI GCSGC 1 cut(s) 1313
TfiI GAWTC 6 cut(s) 206, 242, 470, 697, 980, 1145
Tru1I TTAA 9 cut(s) 80, 102, 153, 393, 570, 585, 843, 1086, 1113
Tru9I TTAA 9 cut(s) 80, 102, 153, 393, 570, 585, 843, 1086, 1113
TscAI CASTG 1 cut(s) 1250
TseI GCWGC 2 cut(s) 686, 920
TspDTI ATGAA 4 cut(s) 329, 446, 531, 735
TspGWI ACGGA 2 cut(s) 322, 399
TspRI CASTG 1 cut(s) 1250
Tth111I GACNNNGTC 1 cut(s) 94
VpaK11BI GGWCC 2 cut(s) 66, 992
VspI ATTAAT 1 cut(s) 585
XapI RAATTY 5 cut(s) 332, 481, 487, 1302, 1421
XmnI GAANNNNTTC 1 cut(s) 193
XspI CTAG 1 cut(s) 984
ZraI GACGTC 2 cut(s) 96, 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.