f-box protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G51370 AT5G51370 AT5G51380 |
| fragaria_vesca | FvH4_7g10820 FvH4_7g27300 FvH4_7g27300 FvH4_7g27300 |
| malus_domestica | MD01G1182100.v1.1 MD02G1213700.v1.1 MD07G1113100.v1.1 MD07G1252400.v1.1 MD11G1194200.v1.1 |
| prunus_persica | Prupe.2G136200_v2.0.a1 Prupe.2G136200_v2.0.a1 Prupe.2G275900_v2.0.a1 |
| pyrus_communis | pycom01g19190 pycom07g09790 pycom07g22480 pycom11g20120 |
| rosa_chinensis | RchiOBHm_Chr1g0348741 RchiOBHm_Chr1g0374141 RchiOBHm_Chr6g0287661 |
| rosa_laevigata | RLG00000012476 RLG00000026759 RLG00000028626 |
| rosa_multiflora | Rmu_co7963096.1_g000001 Rmu_sc0001813.1_g000001 Rmu_sc0006564.1_g000008 Rmu_sc0031820.1_g000001 Rmu_ssc0000007.1_g000044 Rmu_ssc0000450.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00283690 Rroxscaffold_4G00306650 |
| rosa_rugosa | Rorug01G0197700 Rorug01G0381000 |
| rosa_samantha | Rh1AG214600 Rh1AG392000 Rh1BG181200 Rh1BG356000 Rh1CG199300 Rh1CG368900 Rh1DG211300 Rh6CG302900 |
| rosa_wichuraiana | Rw1G018210 Rw1G034370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 481 |
| AccB1I | GGYRCC | 3 cut(s) | 481, 544, 642 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 958 |
| AccII | CGCG | 1 cut(s) | 353 |
| AciI | CCGC | 4 cut(s) | 80, 83, 367, 388 |
| AclWI | GGATC | 1 cut(s) | 935 |
| AcoI | YGGCCR | 3 cut(s) | 113, 318, 807 |
| AcsI | RAATTY | 5 cut(s) | 267, 312, 508, 784, 1027 |
| AfaI | GTAC | 2 cut(s) | 483, 877 |
| AfeI | AGCGCT | 1 cut(s) | 621 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 567, 958 |
| AjnI | CCWGG | 4 cut(s) | 381, 468, 598, 1331 |
| Alw26I | GTCTC | 3 cut(s) | 82, 1435, 1521 |
| AlwI | GGATC | 1 cut(s) | 935 |
| Ama87I | CYCGRG | 2 cut(s) | 97, 1076 |
| Aor51HI | AGCGCT | 1 cut(s) | 621 |
| AoxI | GGCC | 7 cut(s) | 113, 237, 282, 318, 385, 807, 1079 |
| ApeKI | GCWGC | 5 cut(s) | 202, 773, 1007, 1184, 1187 |
| ApoI | RAATTY | 5 cut(s) | 267, 312, 508, 784, 1027 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 407, 439 |
| Asp718I | GGTACC | 1 cut(s) | 481 |
| AspLEI | GCGC | 4 cut(s) | 353, 355, 622, 1012 |
| AspS9I | GGNCC | 5 cut(s) | 238, 283, 385, 502, 1079 |
| AsuC2I | CCSGG | 5 cut(s) | 486, 514, 569, 1077, 1078 |
| AsuHPI | GGTGA | 5 cut(s) | 415, 557, 614, 898, 1276 |
| AsuII | TTCGAA | 1 cut(s) | 576 |
| AvaI | CYCGRG | 2 cut(s) | 97, 1076 |
| AvaII | GGWCC | 1 cut(s) | 502 |
| BaeGI | GKGCMC | 2 cut(s) | 647, 716 |
| BalI | TGGCCA | 2 cut(s) | 320, 809 |
| BanI | GGYRCC | 3 cut(s) | 481, 544, 642 |
| BanII | GRGCYC | 1 cut(s) | 212 |
| BbsI | GAAGAC | 2 cut(s) | 420, 1040 |
| BbvCI | CCTCAGC | 1 cut(s) | 1142 |
| BbvI | GCAGC | 5 cut(s) | 214, 785, 994, 1174, 1196 |
| BccI | CCATC | 4 cut(s) | 917, 982, 986, 1474 |
| BceAI | ACGGC | 4 cut(s) | 87, 100, 128, 297 |
| BciT130I | CCWGG | 4 cut(s) | 383, 470, 600, 1333 |
| BclI | TGATCA | 2 cut(s) | 189, 979 |
| BcnI | CCSGG | 5 cut(s) | 486, 514, 569, 1077, 1078 |
| BcoDI | GTCTC | 3 cut(s) | 82, 1435, 1521 |
| BfaI | CTAG | 4 cut(s) | 678, 1191, 1248, 1280 |
| BfoI | RGCGCY | 1 cut(s) | 623 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 384 |
| BisI | GCNGC | 7 cut(s) | 81, 203, 388, 774, 1008, 1185, 1188 |
| BlpI | GCTNAGC | 1 cut(s) | 374 |
| BlsI | GCNGC | 7 cut(s) | 82, 204, 389, 775, 1009, 1186, 1189 |
| Bme1390I | CCNGG | 9 cut(s) | 383, 470, 486, 514, 569, 600, 1077, 1078, 1333 |
| Bme18I | GGWCC | 1 cut(s) | 502 |
| BmeT110I | CYCGRG | 2 cut(s) | 97, 1076 |
| BmgT120I | GGNCC | 5 cut(s) | 238, 283, 385, 502, 1079 |
| BmiI | GGNNCC | 6 cut(s) | 333, 483, 546, 597, 644, 1483 |
| BmrFI | CCNGG | 9 cut(s) | 383, 470, 486, 514, 569, 600, 1077, 1078, 1333 |
| BmrI | ACTGGG | 1 cut(s) | 912 |
| BmsI | GCATC | 1 cut(s) | 1537 |
| BmuI | ACTGGG | 1 cut(s) | 912 |
| BpiI | GAAGAC | 2 cut(s) | 420, 1040 |
| BpmI | CTGGAG | 3 cut(s) | 365, 439, 1334 |
| Bpu10I | CCTNAGC | 2 cut(s) | 867, 1142 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 374 |
| Bpu14I | TTCGAA | 1 cut(s) | 576 |
| BpuEI | CTTGAG | 4 cut(s) | 146, 164, 914, 1390 |
| BpuMI | CCSGG | 5 cut(s) | 486, 514, 569, 1077, 1078 |
| BsaBI | GATNNNNATC | 1 cut(s) | 28 |
| BsaI | GGTCTC | 2 cut(s) | 82, 1435 |
| BsaJI | CCNNGG | 3 cut(s) | 382, 468, 1076 |
| BsaWI | WCCGGW | 3 cut(s) | 276, 504, 560 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 567, 958 |
| Bse118I | RCCGGY | 2 cut(s) | 235, 547 |
| Bse1I | ACTGG | 3 cut(s) | 422, 907, 1485 |
| Bse3DI | GCAATG | 1 cut(s) | 754 |
| Bse8I | GATNNNNATC | 1 cut(s) | 28 |
| BseBI | CCWGG | 4 cut(s) | 383, 470, 600, 1333 |
| BseDI | CCNNGG | 3 cut(s) | 382, 468, 1076 |
| BseGI | GGATG | 4 cut(s) | 993, 997, 1090, 1292 |
| BseJI | GATNNNNATC | 1 cut(s) | 28 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 567, 958 |
| BseMI | GCAATG | 1 cut(s) | 754 |
| BseMII | CTCAG | 6 cut(s) | 365, 618, 752, 881, 1031, 1133 |
| BseNI | ACTGG | 3 cut(s) | 422, 907, 1485 |
| BsePI | GCGCGC | 1 cut(s) | 351 |
| BseRI | GAGGAG | 5 cut(s) | 62, 65, 68, 296, 977 |
| BseSI | GKGCMC | 2 cut(s) | 647, 716 |
| BseX3I | CGGCCG | 1 cut(s) | 113 |
| BseXI | GCAGC | 5 cut(s) | 214, 785, 994, 1174, 1196 |
| BseYI | CCCAGC | 1 cut(s) | 205 |
| BsgI | GTGCAG | 1 cut(s) | 1203 |
| Bsh1236I | CGCG | 1 cut(s) | 353 |
| Bsh1285I | CGRYCG | 1 cut(s) | 116 |
| BshFI | GGCC | 7 cut(s) | 115, 239, 284, 320, 387, 809, 1081 |
| BshNI | GGYRCC | 3 cut(s) | 481, 544, 642 |
| BsiEI | CGRYCG | 1 cut(s) | 116 |
| BsiHKCI | CYCGRG | 2 cut(s) | 97, 1076 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 567, 958 |
| BsmAI | GTCTC | 3 cut(s) | 82, 1435, 1521 |
| BsmI | GAATGC | 1 cut(s) | 1352 |
| BsnI | GGCC | 7 cut(s) | 115, 239, 284, 320, 387, 809, 1081 |
| Bso31I | GGTCTC | 2 cut(s) | 82, 1435 |
| BsoBI | CYCGRG | 2 cut(s) | 97, 1076 |
| Bsp119I | TTCGAA | 1 cut(s) | 576 |
| Bsp1286I | GDGCHC | 3 cut(s) | 212, 647, 716 |
| Bsp1407I | TGTACA | 1 cut(s) | 875 |
| Bsp143I | GATC | 8 cut(s) | 23, 189, 295, 337, 475, 495, 927, 979 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 374 |
| BspACI | CCGC | 4 cut(s) | 80, 83, 367, 388 |
| BspANI | GGCC | 7 cut(s) | 115, 239, 284, 320, 387, 809, 1081 |
| BspCNI | CTCAG | 6 cut(s) | 366, 619, 753, 880, 1032, 1134 |
| BspFNI | CGCG | 1 cut(s) | 353 |
| BspLI | GGNNCC | 6 cut(s) | 333, 483, 546, 597, 644, 1483 |
| BspPI | GGATC | 1 cut(s) | 935 |
| BspT104I | TTCGAA | 1 cut(s) | 576 |
| BspT107I | GGYRCC | 3 cut(s) | 481, 544, 642 |
| BspTNI | GGTCTC | 2 cut(s) | 82, 1435 |
| BsrDI | GCAATG | 1 cut(s) | 754 |
| BsrFI | RCCGGY | 2 cut(s) | 235, 547 |
| BsrGI | TGTACA | 1 cut(s) | 875 |
| BsrI | ACTGG | 3 cut(s) | 422, 907, 1485 |
| BssAI | RCCGGY | 2 cut(s) | 235, 547 |
| BssECI | CCNNGG | 3 cut(s) | 382, 468, 1076 |
| BssHII | GCGCGC | 1 cut(s) | 351 |
| BssMI | GATC | 8 cut(s) | 23, 189, 295, 337, 475, 495, 927, 979 |
| Bst2UI | CCWGG | 4 cut(s) | 383, 470, 600, 1333 |
| Bst4CI | ACNGT | 2 cut(s) | 587, 1214 |
| Bst6I | CTCTTC | 4 cut(s) | 39, 702, 726, 1148 |
| BstAUI | TGTACA | 1 cut(s) | 875 |
| BstBI | TTCGAA | 1 cut(s) | 576 |
| BstC8I | GCNNGC | 6 cut(s) | 61, 212, 237, 353, 365, 1245 |
| BstDEI | CTNAG | 8 cut(s) | 374, 627, 695, 761, 867, 1040, 1142, 1352 |
| BstEII | GGTNACC | 1 cut(s) | 563 |
| BstF5I | GGATG | 4 cut(s) | 993, 997, 1090, 1292 |
| BstFNI | CGCG | 1 cut(s) | 353 |
| BstH2I | RGCGCY | 1 cut(s) | 623 |
| BstHHI | GCGC | 4 cut(s) | 353, 355, 622, 1012 |
| BstKTI | GATC | 8 cut(s) | 26, 192, 298, 340, 478, 498, 930, 982 |
| BstMAI | GTCTC | 3 cut(s) | 82, 1435, 1521 |
| BstMBI | GATC | 8 cut(s) | 23, 189, 295, 337, 475, 495, 927, 979 |
| BstMCI | CGRYCG | 1 cut(s) | 116 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 80, 121, 211, 352, 384, 889, 1106 |
| BstNI | CCWGG | 4 cut(s) | 383, 470, 600, 1333 |
| BstPI | GGTNACC | 1 cut(s) | 563 |
| BstSCI | CCNGG | 9 cut(s) | 381, 468, 484, 512, 567, 598, 1075, 1076, 1331 |
| BstSLI | GKGCMC | 2 cut(s) | 647, 716 |
| BstUI | CGCG | 1 cut(s) | 353 |
| BstV1I | GCAGC | 5 cut(s) | 214, 785, 994, 1174, 1196 |
| BstV2I | GAAGAC | 2 cut(s) | 420, 1040 |
| BstZI | CGGCCG | 1 cut(s) | 113 |
| BsuRI | GGCC | 7 cut(s) | 115, 239, 284, 320, 387, 809, 1081 |
| BtsCI | GGATG | 4 cut(s) | 993, 997, 1090, 1292 |
| BtsI | GCAGTG | 1 cut(s) | 950 |
| BtsIMutI | CAGTG | 2 cut(s) | 491, 950 |
| Cac8I | GCNNGC | 6 cut(s) | 61, 212, 237, 353, 365, 1245 |
| CfoI | GCGC | 4 cut(s) | 353, 355, 622, 1012 |
| Cfr10I | RCCGGY | 2 cut(s) | 235, 547 |
| Cfr13I | GGNCC | 5 cut(s) | 238, 283, 385, 502, 1079 |
| Cfr9I | CCCGGG | 1 cut(s) | 1076 |
| CpoI | CGGWCCG | 1 cut(s) | 502 |
| Csp6I | GTAC | 2 cut(s) | 482, 876 |
| CspI | CGGWCCG | 1 cut(s) | 502 |
| CviAII | CATG | 3 cut(s) | 193, 530, 1365 |
| CviQI | GTAC | 2 cut(s) | 482, 876 |
| DdeI | CTNAG | 8 cut(s) | 374, 627, 695, 761, 867, 1040, 1142, 1352 |
| DpnI | GATC | 8 cut(s) | 25, 191, 297, 339, 477, 497, 929, 981 |
| DpnII | GATC | 8 cut(s) | 23, 189, 295, 337, 475, 495, 927, 979 |
| EaeI | YGGCCR | 3 cut(s) | 113, 318, 807 |
| EagI | CGGCCG | 1 cut(s) | 113 |
| Eam1104I | CTCTTC | 4 cut(s) | 39, 702, 726, 1148 |
| EarI | CTCTTC | 4 cut(s) | 39, 702, 726, 1148 |
| EciI | GGCGGA | 1 cut(s) | 98 |
| EclXI | CGGCCG | 1 cut(s) | 113 |
| Eco24I | GRGCYC | 1 cut(s) | 212 |
| Eco31I | GGTCTC | 2 cut(s) | 82, 1435 |
| Eco32I | GATATC | 1 cut(s) | 847 |
| Eco47I | GGWCC | 1 cut(s) | 502 |
| Eco47III | AGCGCT | 1 cut(s) | 621 |
| Eco52I | CGGCCG | 1 cut(s) | 113 |
| Eco88I | CYCGRG | 2 cut(s) | 97, 1076 |
| Eco91I | GGTNACC | 1 cut(s) | 563 |
| EcoO65I | GGTNACC | 1 cut(s) | 563 |
| EcoRI | GAATTC | 1 cut(s) | 508 |
| EcoRII | CCWGG | 4 cut(s) | 381, 468, 598, 1331 |
| EcoRV | GATATC | 1 cut(s) | 847 |
| EcoT38I | GRGCYC | 1 cut(s) | 212 |
| FaeI | CATG | 3 cut(s) | 196, 533, 1368 |
| FatI | CATG | 3 cut(s) | 192, 529, 1364 |
| FbaI | TGATCA | 2 cut(s) | 189, 979 |
| Fnu4HI | GCNGC | 7 cut(s) | 81, 203, 388, 774, 1008, 1185, 1188 |
| FokI | GGATG | 4 cut(s) | 1000, 1004, 1097, 1299 |
| FriOI | GRGCYC | 1 cut(s) | 212 |
| Fsp4HI | GCNGC | 7 cut(s) | 81, 203, 388, 774, 1008, 1185, 1188 |
| FspBI | CTAG | 4 cut(s) | 678, 1191, 1248, 1280 |
| GlaI | GCGC | 4 cut(s) | 352, 354, 621, 1011 |
| GluI | GCNGC | 7 cut(s) | 81, 203, 388, 774, 1008, 1185, 1188 |
| GsaI | CCCAGC | 1 cut(s) | 209 |
| GsuI | CTGGAG | 3 cut(s) | 365, 439, 1334 |
| HaeII | RGCGCY | 1 cut(s) | 623 |
| HaeIII | GGCC | 7 cut(s) | 115, 239, 284, 320, 387, 809, 1081 |
| HhaI | GCGC | 4 cut(s) | 353, 355, 622, 1012 |
| Hin1II | CATG | 3 cut(s) | 196, 533, 1368 |
| Hin6I | GCGC | 4 cut(s) | 351, 353, 620, 1010 |
| HinP1I | GCGC | 4 cut(s) | 351, 353, 620, 1010 |
| HincII | GTYRAC | 1 cut(s) | 855 |
| HindII | GTYRAC | 1 cut(s) | 855 |
| HindIII | AAGCTT | 3 cut(s) | 659, 890, 916 |
| HinfI | GANTC | 8 cut(s) | 15, 152, 221, 431, 526, 1036, 1316, 1324 |
| HphI | GGTGA | 5 cut(s) | 415, 557, 614, 898, 1276 |
| Hpy166II | GTNNAC | 4 cut(s) | 491, 855, 876, 1292 |
| Hpy188I | TCNGA | 9 cut(s) | 151, 265, 274, 295, 342, 459, 502, 844, 1041 |
| Hpy188III | TCNNGA | 8 cut(s) | 163, 181, 225, 725, 1208, 1280, 1313, 1516 |
| Hpy8I | GTNNAC | 4 cut(s) | 491, 855, 876, 1292 |
| Hpy99I | CGWCG | 1 cut(s) | 73 |
| HpyAV | CCTTC | 4 cut(s) | 400, 1277, 1301, 1330 |
| HpyCH4III | ACNGT | 2 cut(s) | 587, 1214 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 80, 121, 211, 352, 384, 889, 1106 |
| HpyF3I | CTNAG | 8 cut(s) | 374, 627, 695, 761, 867, 1040, 1142, 1352 |
| Hsp92II | CATG | 3 cut(s) | 196, 533, 1368 |
| HspAI | GCGC | 4 cut(s) | 351, 353, 620, 1010 |
| KpnI | GGTACC | 1 cut(s) | 485 |
| KroI | GCCGGC | 1 cut(s) | 235 |
| KroNI | GCCGGC | 1 cut(s) | 237 |
| Ksp22I | TGATCA | 2 cut(s) | 189, 979 |
| Kzo9I | GATC | 8 cut(s) | 23, 189, 295, 337, 475, 495, 927, 979 |
| LmnI | GCTCC | 4 cut(s) | 331, 420, 1339, 1555 |
| Lsp1109I | GCAGC | 5 cut(s) | 214, 785, 994, 1174, 1196 |
| LweI | GCATC | 1 cut(s) | 1537 |
| MaeI | CTAG | 4 cut(s) | 678, 1191, 1248, 1280 |
| MaeIII | GTNAC | 2 cut(s) | 563, 1264 |
| MalI | GATC | 8 cut(s) | 25, 191, 297, 339, 477, 497, 929, 981 |
| MboI | GATC | 8 cut(s) | 23, 189, 295, 337, 475, 495, 927, 979 |
| MboII | GAAGA | 9 cut(s) | 19, 53, 56, 425, 667, 713, 719, 1045, 1165 |
| MfeI | CAATTG | 2 cut(s) | 287, 936 |
| MhlI | GDGCHC | 3 cut(s) | 212, 647, 716 |
| MlsI | TGGCCA | 2 cut(s) | 320, 809 |
| MluNI | TGGCCA | 2 cut(s) | 320, 809 |
| MlyI | GAGTC | 4 cut(s) | 161, 230, 1030, 1325 |
| MmeI | TCCRAC | 3 cut(s) | 711, 939, 1459 |
| Mox20I | TGGCCA | 2 cut(s) | 320, 809 |
| MroNI | GCCGGC | 1 cut(s) | 235 |
| MscI | TGGCCA | 2 cut(s) | 320, 809 |
| MslI | CAYNNNNRTG | 2 cut(s) | 197, 1430 |
| Msp20I | TGGCCA | 2 cut(s) | 320, 809 |
| MspA1I | CMGCKG | 3 cut(s) | 205, 1141, 1187 |
| MspR9I | CCNGG | 9 cut(s) | 383, 470, 486, 514, 569, 600, 1077, 1078, 1333 |
| MunI | CAATTG | 2 cut(s) | 287, 936 |
| Mva1269I | GAATGC | 1 cut(s) | 1352 |
| MvaI | CCWGG | 4 cut(s) | 383, 470, 600, 1333 |
| MvnI | CGCG | 1 cut(s) | 353 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 80, 121, 211, 352, 384, 889, 1106 |
| NaeI | GCCGGC | 1 cut(s) | 237 |
| NciI | CCSGG | 5 cut(s) | 486, 514, 569, 1077, 1078 |
| NdeII | GATC | 8 cut(s) | 23, 189, 295, 337, 475, 495, 927, 979 |
| NgoMIV | GCCGGC | 1 cut(s) | 235 |
| NlaIII | CATG | 3 cut(s) | 196, 533, 1368 |
| NlaIV | GGNNCC | 6 cut(s) | 333, 483, 546, 597, 644, 1483 |
| NmeAIII | GCCGAG | 1 cut(s) | 372 |
| NmuCI | GTSAC | 2 cut(s) | 563, 1264 |
| NspV | TTCGAA | 1 cut(s) | 576 |
| PauI | GCGCGC | 1 cut(s) | 351 |
| PctI | GAATGC | 1 cut(s) | 1352 |
| PdiI | GCCGGC | 1 cut(s) | 237 |
| PfeI | GAWTC | 4 cut(s) | 15, 431, 526, 1324 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 958 |
| PfoI | TCCNGGA | 2 cut(s) | 512, 1331 |
| PkrI | GCNGC | 7 cut(s) | 82, 204, 389, 775, 1009, 1186, 1189 |
| PleI | GAGTC | 4 cut(s) | 160, 229, 1030, 1324 |
| PpsI | GAGTC | 4 cut(s) | 160, 229, 1030, 1324 |
| Psp6I | CCWGG | 4 cut(s) | 381, 468, 598, 1331 |
| PspEI | GGTNACC | 1 cut(s) | 563 |
| PspFI | CCCAGC | 1 cut(s) | 205 |
| PspGI | CCWGG | 4 cut(s) | 381, 468, 598, 1331 |
| PspN4I | GGNNCC | 6 cut(s) | 333, 483, 546, 597, 644, 1483 |
| PspPI | GGNCC | 5 cut(s) | 238, 283, 385, 502, 1079 |
| PteI | GCGCGC | 1 cut(s) | 351 |
| PvuII | CAGCTG | 3 cut(s) | 205, 1141, 1187 |
| RsaI | GTAC | 2 cut(s) | 483, 877 |
| RsaNI | GTAC | 2 cut(s) | 482, 876 |
| RseI | CAYNNNNRTG | 2 cut(s) | 197, 1430 |
| Rsr2I | CGGWCCG | 1 cut(s) | 502 |
| RsrII | CGGWCCG | 1 cut(s) | 502 |
| SatI | GCNGC | 7 cut(s) | 81, 203, 388, 774, 1008, 1185, 1188 |
| Sau3AI | GATC | 8 cut(s) | 23, 189, 295, 337, 475, 495, 927, 979 |
| Sau96I | GGNCC | 5 cut(s) | 238, 283, 385, 502, 1079 |
| SchI | GAGTC | 4 cut(s) | 161, 230, 1030, 1325 |
| ScrFI | CCNGG | 9 cut(s) | 383, 470, 486, 514, 569, 600, 1077, 1078, 1333 |
| SduI | GDGCHC | 3 cut(s) | 212, 647, 716 |
| SfaNI | GCATC | 1 cut(s) | 1537 |
| SfuI | TTCGAA | 1 cut(s) | 576 |
| SinI | GGWCC | 1 cut(s) | 502 |
| SmaI | CCCGGG | 1 cut(s) | 1078 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 197, 1430 |
| SmlI | CTYRAG | 4 cut(s) | 161, 179, 893, 1405 |
| SmoI | CTYRAG | 4 cut(s) | 161, 179, 893, 1405 |
| SsiI | CCGC | 4 cut(s) | 80, 83, 367, 388 |
| SspMI | CTAG | 4 cut(s) | 678, 1191, 1248, 1280 |
| StyD4I | CCNGG | 9 cut(s) | 381, 468, 484, 512, 567, 598, 1075, 1076, 1331 |
| TaaI | ACNGT | 2 cut(s) | 587, 1214 |
| TaqI | TCGA | 3 cut(s) | 309, 429, 576 |
| TatI | WGTACW | 1 cut(s) | 875 |
| TauI | GCSGC | 2 cut(s) | 83, 390 |
| TfiI | GAWTC | 4 cut(s) | 15, 431, 526, 1324 |
| TscAI | CASTG | 2 cut(s) | 498, 950 |
| TseFI | GTSAC | 2 cut(s) | 563, 1264 |
| TseI | GCWGC | 5 cut(s) | 202, 773, 1007, 1184, 1187 |
| Tsp45I | GTSAC | 2 cut(s) | 563, 1264 |
| TspDTI | ATGAA | 1 cut(s) | 1448 |
| TspGWI | ACGGA | 1 cut(s) | 1319 |
| TspMI | CCCGGG | 1 cut(s) | 1076 |
| TspRI | CASTG | 2 cut(s) | 498, 950 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 958 |
| VpaK11BI | GGWCC | 1 cut(s) | 502 |
| XapI | RAATTY | 5 cut(s) | 267, 312, 508, 784, 1027 |
| XbaI | TCTAGA | 1 cut(s) | 1279 |
| XmaI | CCCGGG | 1 cut(s) | 1076 |
| XspI | CTAG | 4 cut(s) | 678, 1191, 1248, 1280 |