Rmu_ssc0000007.1_g000044

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000007.1
Physical Location & Seq
Reverse (-)
210182 .. 212209
2028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000007.1_g000044.1.cds

Sequence Viewer

Length: 1557 bp
atgttgaagatgagattcaaaagatcagtatcagcaaaagaagaagaggaggaggaggctcgcaaaacgacggcgtttgcggcggagagacccgacccgagaagcccattacggccgttgaagctgaacaggaggtcggcgagttggtcagagtcgtggctcaagaacactacttcactcaagaatgtgatcatggctatgcagctgggctcgcccaaagagtccagattgaagccggcccagaaaaccctaaaccctaattctgaaatttctgaccggacggcccaattgtccgatcaaatcctcctcgaaattctggccaaactgccggagcctgatcggaagccgagcgcgctggtctgcaagcggtggctgagcctccagggccgccttgtgaggtcggtgaaggtggaagactggagctttgtcgaatcgggtcgggttatttcaaggtttccgagcttgacccaggttgatctggtacccggttcactgatctcggaccggaattccgggattttgctgaatcatggtgggttttcggtgccggttgcttgttccggtcaccgggttttcgaagctgactgtgatttggttcctggtgaggttgtggatagagggcttactgagttagggagtgggtgccccaatttgaagaagctagttgtgattggggctagtgagttagggttgctaagtatagcagaagagtgcccaactcttcaagagttggagttgcacaagtgcaatgataatttgctgagagggattgcagcttgtgagaatttgcaagtgttgaagttggtggccaatgtggaggggctatatggttctgtggtttcggatatcgggttgacgattttggctcaggggtgtacaaggctggtgaagcttgagcttactgggtgtgagggaagctttgatgggatcaaggcaattgggcagtgttgccagatgttggaggagttgagtttctgtgatcataggatggatggtgggtggttggctgcgctttcgtattgtgagaatttgaagactctgaggtttcaatcttgtaagaggattgagtgtgttcccgggccggatgagtatttgggtgcttgtcctgctttggagaacttgcatttgcagaagtgtcagctgagggataagaagagtgtgagagctttgtttatggtgtgtgcagctgctagagagattgtgtttcaggactgttggggattggacaatgatatgttcaggctggctagtatttgcaggagggtgactttcctatctctagaaggatgttcacttctaacaacggaaggtctggagtctgtgattctctcctggaaggagcttgaatgccttagagttgtatcatgcaagaatataaaggacaaggatatatctcctacactctcaagcatattctctactctcatagatatgaaatggagacctgacaccaaatctctgcttccatcaagcattgttggaaccagtttgggaaagaaaggcagtagatttttcaggaaaagtagagacttgaagtttctgtttgatgctccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

518

Amino Acids

57.44

Weight (kDa)

8.35

Isoelectric Point (pI)

51.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 481
AccB1I GGYRCC 3 cut(s) 481, 544, 642
AccB7I CCANNNNNTGG 1 cut(s) 958
AccII CGCG 1 cut(s) 353
AciI CCGC 4 cut(s) 80, 83, 367, 388
AclWI GGATC 1 cut(s) 935
AcoI YGGCCR 3 cut(s) 113, 318, 807
AcsI RAATTY 5 cut(s) 267, 312, 508, 784, 1027
AfaI GTAC 2 cut(s) 483, 877
AfiI CCNNNNNNNGG 2 cut(s) 567, 958
AjnI CCWGG 4 cut(s) 381, 468, 598, 1331
Alw26I GTCTC 3 cut(s) 82, 1435, 1521
AlwI GGATC 1 cut(s) 935
Ama87I CYCGRG 2 cut(s) 97, 1076
AoxI GGCC 7 cut(s) 113, 237, 282, 318, 385, 807, 1079
ApeKI GCWGC 5 cut(s) 202, 773, 1007, 1184, 1187
ApoI RAATTY 5 cut(s) 267, 312, 508, 784, 1027
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
Asp718I GGTACC 1 cut(s) 481
AspLEI GCGC 3 cut(s) 353, 355, 1012
AspS9I GGNCC 5 cut(s) 238, 283, 385, 502, 1079
AsuC2I CCSGG 5 cut(s) 486, 514, 569, 1077, 1078
AsuHPI GGTGA 5 cut(s) 415, 557, 614, 898, 1276
AsuII TTCGAA 1 cut(s) 576
AvaI CYCGRG 2 cut(s) 97, 1076
AvaII GGWCC 1 cut(s) 502
BaeGI GKGCMC 2 cut(s) 647, 716
BalI TGGCCA 2 cut(s) 320, 809
BanI GGYRCC 3 cut(s) 481, 544, 642
BanII GRGCYC 1 cut(s) 212
BbsI GAAGAC 2 cut(s) 420, 1040
BbvCI CCTCAGC 1 cut(s) 1142
BbvI GCAGC 5 cut(s) 214, 785, 994, 1174, 1196
BccI CCATC 4 cut(s) 917, 982, 986, 1474
BceAI ACGGC 4 cut(s) 87, 100, 128, 297
BciT130I CCWGG 4 cut(s) 383, 470, 600, 1333
BclI TGATCA 2 cut(s) 189, 979
BcnI CCSGG 5 cut(s) 486, 514, 569, 1077, 1078
BcoDI GTCTC 3 cut(s) 82, 1435, 1521
BfaI CTAG 5 cut(s) 662, 678, 1191, 1248, 1280
BglI GCCNNNNNGGC 1 cut(s) 384
BisI GCNGC 7 cut(s) 81, 203, 388, 774, 1008, 1185, 1188
BlpI GCTNAGC 1 cut(s) 374
BlsI GCNGC 7 cut(s) 82, 204, 389, 775, 1009, 1186, 1189
Bme1390I CCNGG 9 cut(s) 383, 470, 486, 514, 569, 600, 1077, 1078, 1333
Bme18I GGWCC 1 cut(s) 502
BmeT110I CYCGRG 2 cut(s) 97, 1076
BmgT120I GGNCC 5 cut(s) 238, 283, 385, 502, 1079
BmiI GGNNCC 6 cut(s) 333, 483, 546, 597, 644, 1483
BmrFI CCNGG 9 cut(s) 383, 470, 486, 514, 569, 600, 1077, 1078, 1333
BmrI ACTGGG 1 cut(s) 912
BmsI GCATC 1 cut(s) 1537
BmuI ACTGGG 1 cut(s) 912
BpiI GAAGAC 2 cut(s) 420, 1040
BpmI CTGGAG 3 cut(s) 365, 439, 1334
Bpu10I CCTNAGC 2 cut(s) 867, 1142
Bpu1102I GCTNAGC 1 cut(s) 374
Bpu14I TTCGAA 1 cut(s) 576
BpuEI CTTGAG 4 cut(s) 146, 164, 914, 1390
BpuMI CCSGG 5 cut(s) 486, 514, 569, 1077, 1078
BsaBI GATNNNNATC 1 cut(s) 28
BsaI GGTCTC 2 cut(s) 82, 1435
BsaJI CCNNGG 3 cut(s) 382, 468, 1076
BsaWI WCCGGW 3 cut(s) 276, 504, 560
Bsc4I CCNNNNNNNGG 2 cut(s) 567, 958
Bse118I RCCGGY 2 cut(s) 235, 547
Bse1I ACTGG 3 cut(s) 422, 907, 1485
Bse3DI GCAATG 1 cut(s) 754
Bse8I GATNNNNATC 1 cut(s) 28
BseBI CCWGG 4 cut(s) 383, 470, 600, 1333
BseDI CCNNGG 3 cut(s) 382, 468, 1076
BseGI GGATG 4 cut(s) 993, 997, 1090, 1292
BseJI GATNNNNATC 1 cut(s) 28
BseLI CCNNNNNNNGG 2 cut(s) 567, 958
BseMI GCAATG 1 cut(s) 754
BseMII CTCAG 6 cut(s) 365, 618, 752, 881, 1031, 1133
BseNI ACTGG 3 cut(s) 422, 907, 1485
BsePI GCGCGC 1 cut(s) 351
BseRI GAGGAG 5 cut(s) 62, 65, 68, 296, 977
BseSI GKGCMC 2 cut(s) 647, 716
BseX3I CGGCCG 1 cut(s) 113
BseXI GCAGC 5 cut(s) 214, 785, 994, 1174, 1196
BseYI CCCAGC 1 cut(s) 205
BsgI GTGCAG 1 cut(s) 1203
Bsh1236I CGCG 1 cut(s) 353
Bsh1285I CGRYCG 1 cut(s) 116
BshFI GGCC 7 cut(s) 115, 239, 284, 320, 387, 809, 1081
BshNI GGYRCC 3 cut(s) 481, 544, 642
BsiEI CGRYCG 1 cut(s) 116
BsiHKCI CYCGRG 2 cut(s) 97, 1076
BslI CCNNNNNNNGG 2 cut(s) 567, 958
BsmAI GTCTC 3 cut(s) 82, 1435, 1521
BsmI GAATGC 1 cut(s) 1352
BsnI GGCC 7 cut(s) 115, 239, 284, 320, 387, 809, 1081
Bso31I GGTCTC 2 cut(s) 82, 1435
BsoBI CYCGRG 2 cut(s) 97, 1076
Bsp119I TTCGAA 1 cut(s) 576
Bsp1286I GDGCHC 3 cut(s) 212, 647, 716
Bsp1407I TGTACA 1 cut(s) 875
Bsp143I GATC 8 cut(s) 23, 189, 295, 337, 475, 495, 927, 979
Bsp1720I GCTNAGC 1 cut(s) 374
BspACI CCGC 4 cut(s) 80, 83, 367, 388
BspANI GGCC 7 cut(s) 115, 239, 284, 320, 387, 809, 1081
BspCNI CTCAG 6 cut(s) 366, 619, 753, 880, 1032, 1134
BspFNI CGCG 1 cut(s) 353
BspLI GGNNCC 6 cut(s) 333, 483, 546, 597, 644, 1483
BspPI GGATC 1 cut(s) 935
BspT104I TTCGAA 1 cut(s) 576
BspT107I GGYRCC 3 cut(s) 481, 544, 642
BspTNI GGTCTC 2 cut(s) 82, 1435
BsrDI GCAATG 1 cut(s) 754
BsrFI RCCGGY 2 cut(s) 235, 547
BsrGI TGTACA 1 cut(s) 875
BsrI ACTGG 3 cut(s) 422, 907, 1485
BssAI RCCGGY 2 cut(s) 235, 547
BssECI CCNNGG 3 cut(s) 382, 468, 1076
BssHII GCGCGC 1 cut(s) 351
BssMI GATC 8 cut(s) 23, 189, 295, 337, 475, 495, 927, 979
Bst2UI CCWGG 4 cut(s) 383, 470, 600, 1333
Bst4CI ACNGT 2 cut(s) 587, 1214
Bst6I CTCTTC 4 cut(s) 39, 702, 726, 1148
BstAUI TGTACA 1 cut(s) 875
BstBI TTCGAA 1 cut(s) 576
BstC8I GCNNGC 6 cut(s) 61, 212, 237, 353, 365, 1245
BstDEI CTNAG 8 cut(s) 374, 627, 695, 761, 867, 1040, 1142, 1352
BstEII GGTNACC 1 cut(s) 563
BstF5I GGATG 4 cut(s) 993, 997, 1090, 1292
BstFNI CGCG 1 cut(s) 353
BstHHI GCGC 3 cut(s) 353, 355, 1012
BstKTI GATC 8 cut(s) 26, 192, 298, 340, 478, 498, 930, 982
BstMAI GTCTC 3 cut(s) 82, 1435, 1521
BstMBI GATC 8 cut(s) 23, 189, 295, 337, 475, 495, 927, 979
BstMCI CGRYCG 1 cut(s) 116
BstMWI GCNNNNNNNGC 7 cut(s) 80, 121, 211, 352, 384, 889, 1106
BstNI CCWGG 4 cut(s) 383, 470, 600, 1333
BstPI GGTNACC 1 cut(s) 563
BstSCI CCNGG 9 cut(s) 381, 468, 484, 512, 567, 598, 1075, 1076, 1331
BstSLI GKGCMC 2 cut(s) 647, 716
BstUI CGCG 1 cut(s) 353
BstV1I GCAGC 5 cut(s) 214, 785, 994, 1174, 1196
BstV2I GAAGAC 2 cut(s) 420, 1040
BstZI CGGCCG 1 cut(s) 113
BsuRI GGCC 7 cut(s) 115, 239, 284, 320, 387, 809, 1081
BtsCI GGATG 4 cut(s) 993, 997, 1090, 1292
BtsI GCAGTG 1 cut(s) 950
BtsIMutI CAGTG 2 cut(s) 491, 950
Cac8I GCNNGC 6 cut(s) 61, 212, 237, 353, 365, 1245
CfoI GCGC 3 cut(s) 353, 355, 1012
Cfr10I RCCGGY 2 cut(s) 235, 547
Cfr13I GGNCC 5 cut(s) 238, 283, 385, 502, 1079
Cfr9I CCCGGG 1 cut(s) 1076
CpoI CGGWCCG 1 cut(s) 502
Csp6I GTAC 2 cut(s) 482, 876
CspI CGGWCCG 1 cut(s) 502
CviAII CATG 3 cut(s) 193, 530, 1365
CviQI GTAC 2 cut(s) 482, 876
DdeI CTNAG 8 cut(s) 374, 627, 695, 761, 867, 1040, 1142, 1352
DpnI GATC 8 cut(s) 25, 191, 297, 339, 477, 497, 929, 981
DpnII GATC 8 cut(s) 23, 189, 295, 337, 475, 495, 927, 979
EaeI YGGCCR 3 cut(s) 113, 318, 807
EagI CGGCCG 1 cut(s) 113
Eam1104I CTCTTC 4 cut(s) 39, 702, 726, 1148
EarI CTCTTC 4 cut(s) 39, 702, 726, 1148
EciI GGCGGA 1 cut(s) 98
EclXI CGGCCG 1 cut(s) 113
Eco24I GRGCYC 1 cut(s) 212
Eco31I GGTCTC 2 cut(s) 82, 1435
Eco32I GATATC 1 cut(s) 847
Eco47I GGWCC 1 cut(s) 502
Eco52I CGGCCG 1 cut(s) 113
Eco88I CYCGRG 2 cut(s) 97, 1076
Eco91I GGTNACC 1 cut(s) 563
EcoO65I GGTNACC 1 cut(s) 563
EcoRI GAATTC 1 cut(s) 508
EcoRII CCWGG 4 cut(s) 381, 468, 598, 1331
EcoRV GATATC 1 cut(s) 847
EcoT38I GRGCYC 1 cut(s) 212
FaeI CATG 3 cut(s) 196, 533, 1368
FatI CATG 3 cut(s) 192, 529, 1364
FbaI TGATCA 2 cut(s) 189, 979
Fnu4HI GCNGC 7 cut(s) 81, 203, 388, 774, 1008, 1185, 1188
FokI GGATG 4 cut(s) 1000, 1004, 1097, 1299
FriOI GRGCYC 1 cut(s) 212
Fsp4HI GCNGC 7 cut(s) 81, 203, 388, 774, 1008, 1185, 1188
FspBI CTAG 5 cut(s) 662, 678, 1191, 1248, 1280
GlaI GCGC 3 cut(s) 352, 354, 1011
GluI GCNGC 7 cut(s) 81, 203, 388, 774, 1008, 1185, 1188
GsaI CCCAGC 1 cut(s) 209
GsuI CTGGAG 3 cut(s) 365, 439, 1334
HaeIII GGCC 7 cut(s) 115, 239, 284, 320, 387, 809, 1081
HhaI GCGC 3 cut(s) 353, 355, 1012
Hin1II CATG 3 cut(s) 196, 533, 1368
Hin6I GCGC 3 cut(s) 351, 353, 1010
HinP1I GCGC 3 cut(s) 351, 353, 1010
HincII GTYRAC 1 cut(s) 855
HindII GTYRAC 1 cut(s) 855
HindIII AAGCTT 2 cut(s) 890, 916
HinfI GANTC 8 cut(s) 15, 152, 221, 431, 526, 1036, 1316, 1324
HphI GGTGA 5 cut(s) 415, 557, 614, 898, 1276
Hpy166II GTNNAC 4 cut(s) 491, 855, 876, 1292
Hpy188I TCNGA 9 cut(s) 151, 265, 274, 295, 342, 459, 502, 844, 1041
Hpy188III TCNNGA 8 cut(s) 163, 181, 225, 725, 1208, 1280, 1313, 1516
Hpy8I GTNNAC 4 cut(s) 491, 855, 876, 1292
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 4 cut(s) 400, 1277, 1301, 1330
HpyCH4III ACNGT 2 cut(s) 587, 1214
HpyF10VI GCNNNNNNNGC 7 cut(s) 80, 121, 211, 352, 384, 889, 1106
HpyF3I CTNAG 8 cut(s) 374, 627, 695, 761, 867, 1040, 1142, 1352
Hsp92II CATG 3 cut(s) 196, 533, 1368
HspAI GCGC 3 cut(s) 351, 353, 1010
KpnI GGTACC 1 cut(s) 485
KroI GCCGGC 1 cut(s) 235
KroNI GCCGGC 1 cut(s) 237
Ksp22I TGATCA 2 cut(s) 189, 979
Kzo9I GATC 8 cut(s) 23, 189, 295, 337, 475, 495, 927, 979
LmnI GCTCC 4 cut(s) 331, 420, 1339, 1555
Lsp1109I GCAGC 5 cut(s) 214, 785, 994, 1174, 1196
LweI GCATC 1 cut(s) 1537
MaeI CTAG 5 cut(s) 662, 678, 1191, 1248, 1280
MaeIII GTNAC 2 cut(s) 563, 1264
MalI GATC 8 cut(s) 25, 191, 297, 339, 477, 497, 929, 981
MboI GATC 8 cut(s) 23, 189, 295, 337, 475, 495, 927, 979
MboII GAAGA 9 cut(s) 19, 53, 56, 425, 667, 713, 719, 1045, 1165
MfeI CAATTG 2 cut(s) 287, 936
MhlI GDGCHC 3 cut(s) 212, 647, 716
MlsI TGGCCA 2 cut(s) 320, 809
MluNI TGGCCA 2 cut(s) 320, 809
MlyI GAGTC 4 cut(s) 161, 230, 1030, 1325
MmeI TCCRAC 3 cut(s) 711, 939, 1459
Mox20I TGGCCA 2 cut(s) 320, 809
MroNI GCCGGC 1 cut(s) 235
MscI TGGCCA 2 cut(s) 320, 809
MslI CAYNNNNRTG 2 cut(s) 197, 1430
Msp20I TGGCCA 2 cut(s) 320, 809
MspA1I CMGCKG 3 cut(s) 205, 1141, 1187
MspR9I CCNGG 9 cut(s) 383, 470, 486, 514, 569, 600, 1077, 1078, 1333
MunI CAATTG 2 cut(s) 287, 936
Mva1269I GAATGC 1 cut(s) 1352
MvaI CCWGG 4 cut(s) 383, 470, 600, 1333
MvnI CGCG 1 cut(s) 353
MwoI GCNNNNNNNGC 7 cut(s) 80, 121, 211, 352, 384, 889, 1106
NaeI GCCGGC 1 cut(s) 237
NciI CCSGG 5 cut(s) 486, 514, 569, 1077, 1078
NdeII GATC 8 cut(s) 23, 189, 295, 337, 475, 495, 927, 979
NgoMIV GCCGGC 1 cut(s) 235
NlaIII CATG 3 cut(s) 196, 533, 1368
NlaIV GGNNCC 6 cut(s) 333, 483, 546, 597, 644, 1483
NmeAIII GCCGAG 1 cut(s) 372
NmuCI GTSAC 2 cut(s) 563, 1264
NspV TTCGAA 1 cut(s) 576
PauI GCGCGC 1 cut(s) 351
PctI GAATGC 1 cut(s) 1352
PdiI GCCGGC 1 cut(s) 237
PfeI GAWTC 4 cut(s) 15, 431, 526, 1324
PflMI CCANNNNNTGG 1 cut(s) 958
PfoI TCCNGGA 2 cut(s) 512, 1331
PkrI GCNGC 7 cut(s) 82, 204, 389, 775, 1009, 1186, 1189
PleI GAGTC 4 cut(s) 160, 229, 1030, 1324
PpsI GAGTC 4 cut(s) 160, 229, 1030, 1324
Psp6I CCWGG 4 cut(s) 381, 468, 598, 1331
PspEI GGTNACC 1 cut(s) 563
PspFI CCCAGC 1 cut(s) 205
PspGI CCWGG 4 cut(s) 381, 468, 598, 1331
PspN4I GGNNCC 6 cut(s) 333, 483, 546, 597, 644, 1483
PspPI GGNCC 5 cut(s) 238, 283, 385, 502, 1079
PteI GCGCGC 1 cut(s) 351
PvuII CAGCTG 3 cut(s) 205, 1141, 1187
RsaI GTAC 2 cut(s) 483, 877
RsaNI GTAC 2 cut(s) 482, 876
RseI CAYNNNNRTG 2 cut(s) 197, 1430
Rsr2I CGGWCCG 1 cut(s) 502
RsrII CGGWCCG 1 cut(s) 502
SatI GCNGC 7 cut(s) 81, 203, 388, 774, 1008, 1185, 1188
Sau3AI GATC 8 cut(s) 23, 189, 295, 337, 475, 495, 927, 979
Sau96I GGNCC 5 cut(s) 238, 283, 385, 502, 1079
SchI GAGTC 4 cut(s) 161, 230, 1030, 1325
ScrFI CCNGG 9 cut(s) 383, 470, 486, 514, 569, 600, 1077, 1078, 1333
SduI GDGCHC 3 cut(s) 212, 647, 716
SfaNI GCATC 1 cut(s) 1537
SfuI TTCGAA 1 cut(s) 576
SinI GGWCC 1 cut(s) 502
SmaI CCCGGG 1 cut(s) 1078
SmiMI CAYNNNNRTG 2 cut(s) 197, 1430
SmlI CTYRAG 4 cut(s) 161, 179, 893, 1405
SmoI CTYRAG 4 cut(s) 161, 179, 893, 1405
SsiI CCGC 4 cut(s) 80, 83, 367, 388
SspMI CTAG 5 cut(s) 662, 678, 1191, 1248, 1280
StyD4I CCNGG 9 cut(s) 381, 468, 484, 512, 567, 598, 1075, 1076, 1331
TaaI ACNGT 2 cut(s) 587, 1214
TaqI TCGA 3 cut(s) 309, 429, 576
TatI WGTACW 1 cut(s) 875
TauI GCSGC 2 cut(s) 83, 390
TfiI GAWTC 4 cut(s) 15, 431, 526, 1324
TscAI CASTG 2 cut(s) 498, 950
TseFI GTSAC 2 cut(s) 563, 1264
TseI GCWGC 5 cut(s) 202, 773, 1007, 1184, 1187
Tsp45I GTSAC 2 cut(s) 563, 1264
TspDTI ATGAA 1 cut(s) 1448
TspGWI ACGGA 1 cut(s) 1319
TspMI CCCGGG 1 cut(s) 1076
TspRI CASTG 2 cut(s) 498, 950
Van91I CCANNNNNTGG 1 cut(s) 958
VpaK11BI GGWCC 1 cut(s) 502
XapI RAATTY 5 cut(s) 267, 312, 508, 784, 1027
XbaI TCTAGA 1 cut(s) 1279
XmaI CCCGGG 1 cut(s) 1076
XspI CTAG 5 cut(s) 662, 678, 1191, 1248, 1280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.