f-box protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G51370 AT5G51370 AT5G51380 |
| fragaria_vesca | FvH4_7g10820 FvH4_7g27300 FvH4_7g27300 FvH4_7g27300 |
| malus_domestica | MD01G1182100.v1.1 MD02G1213700.v1.1 MD07G1113100.v1.1 MD07G1252400.v1.1 MD11G1194200.v1.1 |
| prunus_persica | Prupe.2G136200_v2.0.a1 Prupe.2G136200_v2.0.a1 Prupe.2G275900_v2.0.a1 |
| pyrus_communis | pycom01g19190 pycom07g09790 pycom07g22480 pycom11g20120 |
| rosa_chinensis | RchiOBHm_Chr1g0348741 RchiOBHm_Chr1g0374141 RchiOBHm_Chr6g0287661 |
| rosa_laevigata | RLG00000012476 RLG00000026759 RLG00000028626 |
| rosa_multiflora | Rmu_co7963096.1_g000001 Rmu_sc0001813.1_g000001 Rmu_sc0006564.1_g000008 Rmu_sc0031820.1_g000001 Rmu_ssc0000007.1_g000044 Rmu_ssc0000450.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00283690 Rroxscaffold_4G00306650 |
| rosa_rugosa | Rorug01G0197700 Rorug01G0381000 |
| rosa_samantha | Rh1AG214600 Rh1AG392000 Rh1BG181200 Rh1BG356000 Rh1CG199300 Rh1CG368900 Rh1DG211300 Rh6CG302900 |
| rosa_wichuraiana | Rw1G018210 Rw1G034370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 644 |
| AccII | CGCG | 1 cut(s) | 76 |
| AccIII | TCCGGA | 1 cut(s) | 29 |
| AclWI | GGATC | 1 cut(s) | 1125 |
| AcoI | YGGCCR | 2 cut(s) | 71, 352 |
| AcsI | RAATTY | 6 cut(s) | 10, 364, 475, 619, 997, 1417 |
| AcuI | CTGAAG | 1 cut(s) | 1001 |
| AcyI | GRCGYC | 1 cut(s) | 645 |
| AfaI | GTAC | 3 cut(s) | 344, 614, 1293 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 430, 462, 992, 993 |
| AgsI | TTSAA | 7 cut(s) | 145, 211, 568, 733, 1003, 1316, 1486 |
| AjnI | CCWGG | 2 cut(s) | 494, 1045 |
| Alw21I | GWGCWC | 1 cut(s) | 870 |
| Alw26I | GTCTC | 2 cut(s) | 9, 180 |
| AlwI | GGATC | 1 cut(s) | 1125 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1454 |
| Ama87I | CYCGRG | 1 cut(s) | 400 |
| Aor13HI | TCCGGA | 1 cut(s) | 29 |
| AoxI | GGCC | 3 cut(s) | 71, 352, 1048 |
| ApeKI | GCWGC | 4 cut(s) | 127, 706, 918, 977 |
| ApoI | RAATTY | 6 cut(s) | 10, 364, 475, 619, 997, 1417 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 377 |
| AspLEI | GCGC | 2 cut(s) | 78, 647 |
| AspS9I | GGNCC | 4 cut(s) | 94, 465, 583, 1049 |
| AsuC2I | CCSGG | 2 cut(s) | 92, 418 |
| AsuHPI | GGTGA | 6 cut(s) | 6, 39, 373, 502, 676, 1246 |
| AsuNHI | GCTAGC | 1 cut(s) | 1217 |
| AvaI | CYCGRG | 1 cut(s) | 400 |
| AvaII | GGWCC | 3 cut(s) | 94, 465, 583 |
| BanI | GGYRCC | 1 cut(s) | 644 |
| BanII | GRGCYC | 2 cut(s) | 192, 870 |
| BbsI | GAAGAC | 1 cut(s) | 1010 |
| Bbv12I | GWGCWC | 1 cut(s) | 870 |
| BbvCI | CCTCAGC | 1 cut(s) | 675 |
| BbvI | GCAGC | 4 cut(s) | 139, 693, 905, 964 |
| BccI | CCATC | 5 cut(s) | 782, 887, 952, 956, 1088 |
| BceAI | ACGGC | 2 cut(s) | 157, 367 |
| BciT130I | CCWGG | 2 cut(s) | 496, 1047 |
| BclI | TGATCA | 1 cut(s) | 949 |
| BcnI | CCSGG | 2 cut(s) | 92, 418 |
| BcoDI | GTCTC | 2 cut(s) | 9, 180 |
| BfaI | CTAG | 2 cut(s) | 1218, 1250 |
| BfoI | RGCGCY | 1 cut(s) | 648 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 70 |
| BglII | AGATCT | 1 cut(s) | 1133 |
| BisI | GCNGC | 8 cut(s) | 71, 74, 128, 626, 707, 919, 978, 1100 |
| BlsI | GCNGC | 8 cut(s) | 72, 75, 129, 627, 708, 920, 979, 1101 |
| BmcAI | AGTACT | 1 cut(s) | 1293 |
| Bme1390I | CCNGG | 4 cut(s) | 92, 418, 496, 1047 |
| Bme18I | GGWCC | 3 cut(s) | 94, 465, 583 |
| BmeT110I | CYCGRG | 1 cut(s) | 400 |
| BmgT120I | GGNCC | 4 cut(s) | 94, 465, 583, 1049 |
| BmiI | GGNNCC | 4 cut(s) | 422, 467, 646, 1051 |
| BmrFI | CCNGG | 4 cut(s) | 92, 418, 496, 1047 |
| BmsI | GCATC | 4 cut(s) | 114, 288, 1002, 1247 |
| BmtI | GCTAGC | 1 cut(s) | 1221 |
| BoxI | GACNNNNGTC | 1 cut(s) | 402 |
| BpiI | GAAGAC | 1 cut(s) | 1010 |
| BpmI | CTGGAG | 3 cut(s) | 116, 1304, 1476 |
| Bpu10I | CCTNAGC | 3 cut(s) | 675, 837, 1372 |
| BpuEI | CTTGAG | 4 cut(s) | 89, 884, 950, 1024 |
| BpuMI | CCSGG | 2 cut(s) | 92, 418 |
| BsaHI | GRCGYC | 1 cut(s) | 645 |
| BsaJI | CCNNGG | 4 cut(s) | 349, 470, 586, 1045 |
| BsaWI | WCCGGW | 1 cut(s) | 29 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 72, 102, 131, 161, 185, 215 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 430, 462, 992, 993 |
| Bse118I | RCCGGY | 1 cut(s) | 354 |
| Bse1I | ACTGG | 2 cut(s) | 56, 648 |
| BseAI | TCCGGA | 1 cut(s) | 29 |
| BseBI | CCWGG | 2 cut(s) | 496, 1047 |
| BseDI | CCNNGG | 4 cut(s) | 349, 470, 586, 1045 |
| BseGI | GGATG | 4 cut(s) | 963, 967, 1204, 1262 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 430, 462, 992, 993 |
| BseMII | CTCAG | 5 cut(s) | 74, 584, 666, 851, 958 |
| BseNI | ACTGG | 2 cut(s) | 56, 648 |
| BseRI | GAGGAG | 7 cut(s) | 190, 245, 260, 263, 566, 692, 1100 |
| BseX3I | CGGCCG | 2 cut(s) | 71, 352 |
| BseXI | GCAGC | 4 cut(s) | 139, 693, 905, 964 |
| BsgI | GTGCAG | 1 cut(s) | 219 |
| Bsh1236I | CGCG | 1 cut(s) | 76 |
| Bsh1285I | CGRYCG | 3 cut(s) | 74, 355, 1415 |
| BshFI | GGCC | 3 cut(s) | 73, 354, 1050 |
| BshNI | GGYRCC | 1 cut(s) | 644 |
| BsiEI | CGRYCG | 3 cut(s) | 74, 355, 1415 |
| BsiHKAI | GWGCWC | 1 cut(s) | 870 |
| BsiHKCI | CYCGRG | 1 cut(s) | 400 |
| BsiSI | CCGG | 4 cut(s) | 30, 92, 355, 418 |
| BslFI | GGGAC | 3 cut(s) | 451, 734, 1059 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 430, 462, 992, 993 |
| BsmAI | GTCTC | 2 cut(s) | 9, 180 |
| BsmBI | CGTCTC | 1 cut(s) | 180 |
| BsmFI | GGGAC | 3 cut(s) | 451, 734, 1059 |
| BsmI | GAATGC | 2 cut(s) | 459, 1211 |
| BsnI | GGCC | 3 cut(s) | 73, 354, 1050 |
| BsoBI | CYCGRG | 1 cut(s) | 400 |
| Bsp1286I | GDGCHC | 2 cut(s) | 192, 870 |
| Bsp13I | TCCGGA | 1 cut(s) | 29 |
| Bsp143I | GATC | 4 cut(s) | 44, 949, 1117, 1133 |
| Bsp19I | CCATGG | 1 cut(s) | 586 |
| BspANI | GGCC | 3 cut(s) | 73, 354, 1050 |
| BspCNI | CTCAG | 5 cut(s) | 75, 585, 667, 850, 957 |
| BspEI | TCCGGA | 1 cut(s) | 29 |
| BspFNI | CGCG | 1 cut(s) | 76 |
| BspHI | TCATGA | 1 cut(s) | 117 |
| BspLI | GGNNCC | 4 cut(s) | 422, 467, 646, 1051 |
| BspOI | GCTAGC | 1 cut(s) | 1221 |
| BspPI | GGATC | 1 cut(s) | 1125 |
| BspT107I | GGYRCC | 1 cut(s) | 644 |
| BsrFI | RCCGGY | 1 cut(s) | 354 |
| BsrI | ACTGG | 2 cut(s) | 56, 648 |
| BssAI | RCCGGY | 1 cut(s) | 354 |
| BssECI | CCNNGG | 4 cut(s) | 349, 470, 586, 1045 |
| BssMI | GATC | 4 cut(s) | 44, 949, 1117, 1133 |
| BssNI | GRCGYC | 1 cut(s) | 645 |
| BssT1I | CCWWGG | 2 cut(s) | 470, 586 |
| Bst2UI | CCWGG | 2 cut(s) | 496, 1047 |
| Bst4CI | ACNGT | 3 cut(s) | 511, 575, 1355 |
| BstACI | GRCGYC | 1 cut(s) | 645 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1445 |
| BstC8I | GCNNGC | 6 cut(s) | 234, 332, 356, 457, 1125, 1219 |
| BstDEI | CTNAG | 6 cut(s) | 83, 593, 675, 837, 944, 1372 |
| BstDSI | CCRYGG | 2 cut(s) | 349, 586 |
| BstEII | GGTNACC | 1 cut(s) | 490 |
| BstF5I | GGATG | 4 cut(s) | 963, 967, 1204, 1262 |
| BstFNI | CGCG | 1 cut(s) | 76 |
| BstH2I | RGCGCY | 1 cut(s) | 648 |
| BstHHI | GCGC | 2 cut(s) | 78, 647 |
| BstKTI | GATC | 4 cut(s) | 47, 952, 1120, 1136 |
| BstMAI | GTCTC | 2 cut(s) | 9, 180 |
| BstMBI | GATC | 4 cut(s) | 44, 949, 1117, 1133 |
| BstMCI | CGRYCG | 3 cut(s) | 74, 355, 1415 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 61, 70, 84, 1099, 1120, 1318, 1445 |
| BstNI | CCWGG | 2 cut(s) | 496, 1047 |
| BstNSI | RCATGY | 2 cut(s) | 113, 1127 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 402 |
| BstPI | GGTNACC | 1 cut(s) | 490 |
| BstSCI | CCNGG | 4 cut(s) | 90, 416, 494, 1045 |
| BstUI | CGCG | 1 cut(s) | 76 |
| BstV1I | GCAGC | 4 cut(s) | 139, 693, 905, 964 |
| BstV2I | GAAGAC | 1 cut(s) | 1010 |
| BstX2I | RGATCY | 1 cut(s) | 1133 |
| BstYI | RGATCY | 1 cut(s) | 1133 |
| BstZI | CGGCCG | 2 cut(s) | 71, 352 |
| BsuRI | GGCC | 3 cut(s) | 73, 354, 1050 |
| BtgI | CCRYGG | 2 cut(s) | 349, 586 |
| BtgZI | GCGATG | 1 cut(s) | 573 |
| BtsCI | GGATG | 4 cut(s) | 963, 967, 1204, 1262 |
| BtsI | GCAGTG | 2 cut(s) | 920, 1262 |
| BtsIMutI | CAGTG | 7 cut(s) | 80, 580, 655, 920, 952, 1262, 1360 |
| Cac8I | GCNNGC | 6 cut(s) | 234, 332, 356, 457, 1125, 1219 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1454 |
| CciI | TCATGA | 1 cut(s) | 117 |
| CciNI | GCGGCCGC | 1 cut(s) | 71 |
| CfoI | GCGC | 2 cut(s) | 78, 647 |
| Cfr10I | RCCGGY | 1 cut(s) | 354 |
| Cfr13I | GGNCC | 4 cut(s) | 94, 465, 583, 1049 |
| Csp6I | GTAC | 3 cut(s) | 343, 613, 1292 |
| CviAII | CATG | 8 cut(s) | 110, 118, 452, 587, 1124, 1144, 1335, 1407 |
| CviQI | GTAC | 3 cut(s) | 343, 613, 1292 |
| DdeI | CTNAG | 6 cut(s) | 83, 593, 675, 837, 944, 1372 |
| DinI | GGCGCC | 1 cut(s) | 646 |
| DpnI | GATC | 4 cut(s) | 46, 951, 1119, 1135 |
| DpnII | GATC | 4 cut(s) | 44, 949, 1117, 1133 |
| EaeI | YGGCCR | 2 cut(s) | 71, 352 |
| EagI | CGGCCG | 2 cut(s) | 71, 352 |
| EciI | GGCGGA | 1 cut(s) | 193 |
| Ecl136II | GAGCTC | 1 cut(s) | 868 |
| EclXI | CGGCCG | 2 cut(s) | 71, 352 |
| Eco130I | CCWWGG | 2 cut(s) | 470, 586 |
| Eco24I | GRGCYC | 2 cut(s) | 192, 870 |
| Eco32I | GATATC | 1 cut(s) | 817 |
| Eco47I | GGWCC | 3 cut(s) | 94, 465, 583 |
| Eco52I | CGGCCG | 2 cut(s) | 71, 352 |
| Eco53kI | GAGCTC | 1 cut(s) | 868 |
| Eco57I | CTGAAG | 1 cut(s) | 1001 |
| Eco88I | CYCGRG | 1 cut(s) | 400 |
| Eco91I | GGTNACC | 1 cut(s) | 490 |
| EcoICRI | GAGCTC | 1 cut(s) | 868 |
| EcoO65I | GGTNACC | 1 cut(s) | 490 |
| EcoRI | GAATTC | 3 cut(s) | 364, 475, 1417 |
| EcoRII | CCWGG | 2 cut(s) | 494, 1045 |
| EcoRV | GATATC | 1 cut(s) | 817 |
| EcoT14I | CCWWGG | 2 cut(s) | 470, 586 |
| EcoT38I | GRGCYC | 2 cut(s) | 192, 870 |
| EgeI | GGCGCC | 1 cut(s) | 646 |
| EheI | GGCGCC | 1 cut(s) | 646 |
| ErhI | CCWWGG | 2 cut(s) | 470, 586 |
| Esp3I | CGTCTC | 1 cut(s) | 180 |
| FaeI | CATG | 8 cut(s) | 113, 121, 455, 590, 1127, 1147, 1338, 1410 |
| FaqI | GGGAC | 3 cut(s) | 451, 734, 1059 |
| FatI | CATG | 8 cut(s) | 109, 117, 451, 586, 1123, 1143, 1334, 1406 |
| FauI | CCCGC | 2 cut(s) | 237, 1107 |
| FbaI | TGATCA | 1 cut(s) | 949 |
| Fnu4HI | GCNGC | 8 cut(s) | 71, 74, 128, 626, 707, 919, 978, 1100 |
| FokI | GGATG | 4 cut(s) | 970, 974, 1211, 1269 |
| FriOI | GRGCYC | 2 cut(s) | 192, 870 |
| Fsp4HI | GCNGC | 8 cut(s) | 71, 74, 128, 626, 707, 919, 978, 1100 |
| FspBI | CTAG | 2 cut(s) | 1218, 1250 |
| GlaI | GCGC | 2 cut(s) | 77, 646 |
| GluI | GCNGC | 8 cut(s) | 71, 74, 128, 626, 707, 919, 978, 1100 |
| GsuI | CTGGAG | 3 cut(s) | 116, 1304, 1476 |
| HaeII | RGCGCY | 1 cut(s) | 648 |
| HaeIII | GGCC | 3 cut(s) | 73, 354, 1050 |
| HapII | CCGG | 4 cut(s) | 30, 92, 355, 418 |
| HhaI | GCGC | 2 cut(s) | 78, 647 |
| Hin1I | GRCGYC | 1 cut(s) | 645 |
| Hin1II | CATG | 8 cut(s) | 113, 121, 455, 590, 1127, 1147, 1338, 1410 |
| Hin6I | GCGC | 2 cut(s) | 76, 645 |
| HinP1I | GCGC | 2 cut(s) | 76, 645 |
| HincII | GTYRAC | 2 cut(s) | 825, 1404 |
| HindII | GTYRAC | 2 cut(s) | 825, 1404 |
| HindIII | AAGCTT | 2 cut(s) | 374, 860 |
| HinfI | GANTC | 9 cut(s) | 242, 398, 427, 484, 521, 543, 940, 1037, 1286 |
| HpaII | CCGG | 4 cut(s) | 30, 92, 355, 418 |
| HphI | GGTGA | 6 cut(s) | 6, 39, 373, 502, 676, 1246 |
| Hpy166II | GTNNAC | 3 cut(s) | 583, 825, 1404 |
| Hpy188I | TCNGA | 3 cut(s) | 187, 262, 814 |
| Hpy188III | TCNNGA | 8 cut(s) | 30, 118, 133, 424, 431, 1250, 1283, 1486 |
| Hpy8I | GTNNAC | 3 cut(s) | 583, 825, 1404 |
| HpyAV | CCTTC | 5 cut(s) | 217, 493, 727, 875, 1247 |
| HpyCH4III | ACNGT | 3 cut(s) | 511, 575, 1355 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 61, 70, 84, 1099, 1120, 1318, 1445 |
| HpyF3I | CTNAG | 6 cut(s) | 83, 593, 675, 837, 944, 1372 |
| Hsp92I | GRCGYC | 1 cut(s) | 645 |
| Hsp92II | CATG | 8 cut(s) | 113, 121, 455, 590, 1127, 1147, 1338, 1410 |
| HspAI | GCGC | 2 cut(s) | 76, 645 |
| KasI | GGCGCC | 1 cut(s) | 644 |
| Kpn2I | TCCGGA | 1 cut(s) | 29 |
| KroI | GCCGGC | 1 cut(s) | 354 |
| KroNI | GCCGGC | 1 cut(s) | 356 |
| Ksp22I | TGATCA | 1 cut(s) | 949 |
| Kzo9I | GATC | 4 cut(s) | 44, 949, 1117, 1133 |
| LmnI | GCTCC | 5 cut(s) | 135, 273, 297, 703, 885 |
| Lsp1109I | GCAGC | 4 cut(s) | 139, 693, 905, 964 |
| LweI | GCATC | 4 cut(s) | 114, 288, 1002, 1247 |
| MaeI | CTAG | 2 cut(s) | 1218, 1250 |
| MaeIII | GTNAC | 3 cut(s) | 490, 1337, 1345 |
| MalI | GATC | 4 cut(s) | 46, 951, 1119, 1135 |
| MboI | GATC | 4 cut(s) | 44, 949, 1117, 1133 |
| MboII | GAAGA | 4 cut(s) | 133, 274, 580, 1015 |
| MflI | RGATCY | 1 cut(s) | 1133 |
| MhlI | GDGCHC | 2 cut(s) | 192, 870 |
| Mly113I | GGCGCC | 1 cut(s) | 645 |
| MlyI | GAGTC | 5 cut(s) | 392, 515, 934, 1031, 1295 |
| MmeI | TCCRAC | 1 cut(s) | 285 |
| MroI | TCCGGA | 1 cut(s) | 29 |
| MroNI | GCCGGC | 1 cut(s) | 354 |
| MroXI | GAANNNNTTC | 1 cut(s) | 377 |
| MseI | TTAA | 3 cut(s) | 900, 1395, 1493 |
| MslI | CAYNNNNRTG | 2 cut(s) | 122, 714 |
| MspI | CCGG | 4 cut(s) | 30, 92, 355, 418 |
| MspR9I | CCNGG | 4 cut(s) | 92, 418, 496, 1047 |
| Mva1269I | GAATGC | 2 cut(s) | 459, 1211 |
| MvaI | CCWGG | 2 cut(s) | 496, 1047 |
| MvnI | CGCG | 1 cut(s) | 76 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 61, 70, 84, 1099, 1120, 1318, 1445 |
| NaeI | GCCGGC | 1 cut(s) | 356 |
| NarI | GGCGCC | 1 cut(s) | 645 |
| NciI | CCSGG | 2 cut(s) | 92, 418 |
| NcoI | CCATGG | 1 cut(s) | 586 |
| NdeII | GATC | 4 cut(s) | 44, 949, 1117, 1133 |
| NgoMIV | GCCGGC | 1 cut(s) | 354 |
| NheI | GCTAGC | 1 cut(s) | 1217 |
| NlaIII | CATG | 8 cut(s) | 113, 121, 455, 590, 1127, 1147, 1338, 1410 |
| NlaIV | GGNNCC | 4 cut(s) | 422, 467, 646, 1051 |
| NmuCI | GTSAC | 1 cut(s) | 490 |
| NotI | GCGGCCGC | 1 cut(s) | 71 |
| NspI | RCATGY | 2 cut(s) | 113, 1127 |
| PaeI | GCATGC | 1 cut(s) | 1127 |
| PagI | TCATGA | 1 cut(s) | 117 |
| PctI | GAATGC | 2 cut(s) | 459, 1211 |
| PdiI | GCCGGC | 1 cut(s) | 356 |
| PdmI | GAANNNNTTC | 1 cut(s) | 377 |
| PfeI | GAWTC | 4 cut(s) | 242, 427, 484, 543 |
| PflFI | GACNNNGTC | 1 cut(s) | 437 |
| PfoI | TCCNGGA | 1 cut(s) | 90 |
| PkrI | GCNGC | 8 cut(s) | 72, 75, 129, 627, 708, 920, 979, 1101 |
| PleI | GAGTC | 5 cut(s) | 392, 515, 934, 1031, 1294 |
| PluTI | GGCGCC | 1 cut(s) | 648 |
| PpsI | GAGTC | 5 cut(s) | 392, 515, 934, 1031, 1294 |
| PshAI | GACNNNNGTC | 1 cut(s) | 402 |
| Psp124BI | GAGCTC | 1 cut(s) | 870 |
| Psp6I | CCWGG | 2 cut(s) | 494, 1045 |
| PspEI | GGTNACC | 1 cut(s) | 490 |
| PspGI | CCWGG | 2 cut(s) | 494, 1045 |
| PspN4I | GGNNCC | 4 cut(s) | 422, 467, 646, 1051 |
| PspPI | GGNCC | 4 cut(s) | 94, 465, 583, 1049 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1454 |
| PsuI | RGATCY | 1 cut(s) | 1133 |
| PsyI | GACNNNGTC | 1 cut(s) | 437 |
| RsaI | GTAC | 3 cut(s) | 344, 614, 1293 |
| RsaNI | GTAC | 3 cut(s) | 343, 613, 1292 |
| RseI | CAYNNNNRTG | 2 cut(s) | 122, 714 |
| SacI | GAGCTC | 1 cut(s) | 870 |
| SaqAI | TTAA | 3 cut(s) | 900, 1395, 1493 |
| SatI | GCNGC | 8 cut(s) | 71, 74, 128, 626, 707, 919, 978, 1100 |
| Sau3AI | GATC | 4 cut(s) | 44, 949, 1117, 1133 |
| Sau96I | GGNCC | 4 cut(s) | 94, 465, 583, 1049 |
| ScaI | AGTACT | 1 cut(s) | 1293 |
| SchI | GAGTC | 5 cut(s) | 392, 515, 934, 1031, 1295 |
| ScrFI | CCNGG | 4 cut(s) | 92, 418, 496, 1047 |
| SduI | GDGCHC | 2 cut(s) | 192, 870 |
| SfaNI | GCATC | 4 cut(s) | 114, 288, 1002, 1247 |
| SfoI | GGCGCC | 1 cut(s) | 646 |
| SinI | GGWCC | 3 cut(s) | 94, 465, 583 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 122, 714 |
| SmlI | CTYRAG | 4 cut(s) | 104, 863, 929, 1039 |
| SmoI | CTYRAG | 4 cut(s) | 104, 863, 929, 1039 |
| SphI | GCATGC | 1 cut(s) | 1127 |
| SspDI | GGCGCC | 1 cut(s) | 644 |
| SspMI | CTAG | 2 cut(s) | 1218, 1250 |
| SstI | GAGCTC | 1 cut(s) | 870 |
| StyD4I | CCNGG | 4 cut(s) | 90, 416, 494, 1045 |
| StyI | CCWWGG | 2 cut(s) | 470, 586 |
| TaaI | ACNGT | 3 cut(s) | 511, 575, 1355 |
| TaqI | TCGA | 5 cut(s) | 381, 441, 519, 1083, 1324 |
| TaqII | GACCGA | 2 cut(s) | 453, 1429 |
| TatI | WGTACW | 1 cut(s) | 1291 |
| TauI | GCSGC | 4 cut(s) | 73, 76, 628, 1102 |
| TfiI | GAWTC | 4 cut(s) | 242, 427, 484, 543 |
| Tru1I | TTAA | 3 cut(s) | 900, 1395, 1493 |
| Tru9I | TTAA | 3 cut(s) | 900, 1395, 1493 |
| TscAI | CASTG | 7 cut(s) | 87, 580, 655, 920, 952, 1269, 1360 |
| TseFI | GTSAC | 1 cut(s) | 490 |
| TseI | GCWGC | 4 cut(s) | 127, 706, 918, 977 |
| Tsp45I | GTSAC | 1 cut(s) | 490 |
| TspDTI | ATGAA | 7 cut(s) | 134, 440, 503, 535, 1132, 1215, 1481 |
| TspGWI | ACGGA | 2 cut(s) | 358, 1364 |
| TspRI | CASTG | 7 cut(s) | 87, 580, 655, 920, 952, 1269, 1360 |
| Tth111I | GACNNNGTC | 1 cut(s) | 437 |
| VpaK11BI | GGWCC | 3 cut(s) | 94, 465, 583 |
| XapI | RAATTY | 6 cut(s) | 10, 364, 475, 619, 997, 1417 |
| XbaI | TCTAGA | 1 cut(s) | 1249 |
| XceI | RCATGY | 2 cut(s) | 113, 1127 |
| XmnI | GAANNNNTTC | 1 cut(s) | 377 |
| XspI | CTAG | 2 cut(s) | 1218, 1250 |
| ZrmI | AGTACT | 1 cut(s) | 1293 |