Rorug01G0197700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001980
Physical Location & Seq
Reverse (-)
27677698 .. 27706410
28713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0197700.1

Sequence Viewer

Length: 3465 bp
ATGCTTACATGGGAAGAAGCGCGAGCAATTTTATCTTTAATTTGGGCGATATCCATACGCCTCTGCGAGTGGATGGTTAAGGCTCCAATATTTGTTCCACTCGTTGCAATTCGGTGGGCGTGGAAGGCTTTTCTTGACATCCCTTCAGCAAAGTGGGAACATGTATTTGTAATATCATGTATTGCGGTCTCACTGGATCCTCTGTTCTTTTACATTCCAATCATCGATGAGACAAATAAATGTCTTTCAATGGACAAAAAGTTGAGAACTATAGCTCTCGTCTTCCGATCGCTTACGGATGCCCCTTTAGTACTCCATATTAAAGATCAAATTCGTGATCGGGTCGACACTGACTACCCCAACTGGTCCGACTCTGACTCCGACTCCGACTCCCATTCTGGGGCAACATCGTCTTCATTGAAGAAGAGGATCCCCTGGTTGTCCTTCCCTATTATAGTTAACTGCCTTGCCATTCTTCCCATACCACAGGTGGCTGCATCAGTTGGCTTTTACCAAATGGGAGCAAGCTCATCGGGCTTTGAAATTTCTATTAGAAGAACAATGCTCCACGTTTCTCTTGCCTTCCAGTATCTGCCAAGGGTTTGTCAAATCTACCTATCTAGTAAGAAGTTTAGAACAAGCGGAAGATGGATTAAACCTTCGCTGAATTTGTTTCTTTACATCCTTAGTAGCCACGTATTTGCTGCGTTTTGGTACTATTTTGCTATTGGACGAGAGATAACATGCTGGCATAAAACCTGCAAAAACACTCCAAGATGTGTAGCTAATTTTGATTGTAGTAGTATTGGCAGGGCTTCAAGAAATATAACAGTCTTAAATCAATTATGCCCTATAAATTCACCGAATACTACAGTATTCGATTTTGGAATCTATCTTCCAATCCTCCAGTCTGGTAACACAGGGAATGTTAGTTTTGTAACAAAGCTCTTTTACTCTTTCTGGTGGGGTTTAAAAAATCTAAGCAATTTTGGCACAAACCTCGAAACCAGTAGCTACAAGTGGGAGAACGGTTTTGCAATTATCATTTGTGTTAGTGGATTGCTACTATTTCTCTATTTCATTGGAAATATGCAGATATATATGGAGTTGGAGACCACAAAATCTTTGAAGACCGACGAATCAAGACGCGAAAAGATTAAAGCAAAGAAAGGAGAAATAAAAACGTGGATGTCAAATATTGATATCTCTGAAAATATGGAAACCAGAATCAAGGAGCACATCAAACAAAACAATGTCGTGGAAAAGAACATAAAGGCAGATGTGGATGTGACATATTTTCTCAACGGCTTTGGCAATTCTAGAATCCGAGAGTCTCTCTTGGAGCATCTCGTACAAAATGCGGTAAAAAAGGTACCGTTGATTGACTTGATTCAGAAAATGCGTGCAAGCAGTTTAAAGACCTTGTGCGGATGTATGAAGCCAGTTGTCTATAACAAAGACCGCATTCTTGAAGTACAGGCCGGAAACAAGCTTGTTCAGATGATCTTCATCATACAAGGTGAAATTGATCAATATTGTACCGAAACTCAGACGACCAACAGCCATTTTAAACGTCTAAGTAAAGGTGATTGTTATGGAATACAAATTCAAAATTGGGCAGCAAGGAACTACATGAGGTCTTATTATGACCCTCTTCCAACTTCCACCGGATGGGTCAGATGCCAAACAAGAGTAGAAGCCTTTGAACTCCAGGCCATGGACTTGATGCAAATTATTACCCAGAAGAAATTGAGGCAAGAGCAGTTGGAAAAGTTGGTAGGCATTGAAGACAGCACTGATCAGATACCAAACGAGGATGATCTACAATCAATTCCCCAGTATGAACAGTTAGAACCTGAGTGGGTGAAGCTCAGTTGTAGTGTTGTGTGGAACCCGAAAACTAAGAAGGCAGGAACAGGTTACGTTTGCAGGGATGCGCAAGGAGATTTCTTGGGTGCTGAAAGTAGAGGTAGTTTAAAATTCAGGGACAGATTTTTGGCTGAAGCTGACAACATGAACAAAGCTATTGCATTTTTTACTAAGAATAAATTTCAAGGCAAGGGGCGGATTGTGGTGGAGTCTGATAACAAAGATCTCATTGAGTGCCTCTGTCAGCCTTTGGACTCAAATGAAAGAATATCTGACGTCCTTCGATCCGTCCTGGAAGAAATTATCAAGTCGGCTTCAAAATTTAAATCTAAACGTTTTAAACATTGTAAGCGCCAAAGTAATGCAGCAGCTAATTGCATAGCAAGGCATGCCGTGGATTCTCCTGATCCTTCTTCTTGGATTCGCAATGCACCTGATTGCCTACTTACTATCCTCAAGCAAGATAGCTTGCATCTTCAGGAGAAACCACCGTCAGAGCAAAACCAAGAGCGGAGAGTAGACATTCAACCTCCGGAACCACCGTCAAAGAAAAACCAGGAGCTGAGAGTAGACATTGAACCTCCGGAACCACCGTCAGAGAAAAACCAGGAGCTGAGAGTAGACATTGAACCTCCGGAACCACCGTCAGAGAAAAACCAGGAGCTGAGAGTAGACATTGAACCTCCGGAACCACCGTCAGAGCAAAACCAGGAGCTGAGAGTAGTCATTGAACCTCCGGAACCACTGTCAGAACAAAACCAGGGGCTGACAGTAGACATTGAACATTCGGATTCCGGATGCATGAATTGCCTAGGCAAAAAAGGACACATGGACGCTGATGTTGATGTGGATGTTCTATTCGCTAATCCTCCAAGTGATATCAAACAATCCAAAAAACGCCATCTCGGCTTGAATGCCCTAAAGAAGGTACCCATGCTTCAAAAGATGCACGAATACGTGTTGGAAATCATCTGCAACCATCTCGAGTCAAAGGTGTACGAGAGGAATAGCTATGTTGTTAGAGCGAGAGAACCACTTGGTTTGATGATCTTCATTCTCCGAGGCACAATTGGAATGACTGACACGACTAGCAGCAATGCCACAACAACAGGTTCCTCGGAGATCACCGAGTCACGTGATGACAAGATCCTTAGGGAAGGGGATTTTTATGGAGAACAACTTCTGAGCTGGGCATCTCCCAACAATATTTCTTCTTCTTATAATCCCGTCATCTCAGCTATAGATGTCAGATGTCAAACAAAAGTGGAAGCCTTGATTCTCAAGGCCGATGCCTTGAAAAGTGTAGCCTCCAAATGCGGATCGCAGTGGAATTTCGACAGTTGTATGAATTCTCAGCAGTTGGTTGATGATGGCAGACATCGTGGGGCTAATACAGCACCAACGTCCACTATTGAGGAGACTATCCGGCTTCATCAGGGTCATGACATAATTCTAGAGCAACTAGTTTTAATTAGAGAGACCATATTCCGGAGATTAGACGATCAGGAACGGAAATTAGACGAGATGGCTGCATTTTTAGCCAGAGAGGGTTACACAGGGATTACAGGCGCATCTTCTACTCCTTCAGCGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like Remorin_C

Protein Analysis

1154

Amino Acids

131.12

Weight (kDa)

6.86

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 628 - 754 1.6e-12 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3090
AatII GACGTC 1 cut(s) 2148
Acc16I TGCGCA 1 cut(s) 1938
Acc36I ACCTGC 1 cut(s) 767
Acc65I GGTACC 2 cut(s) 1372, 2797
AccB1I GGYRCC 2 cut(s) 1372, 2797
AccB7I CCANNNNNTGG 2 cut(s) 1671, 1717
AccBSI CCGCTC 1 cut(s) 2380
AccI GTMKAC 6 cut(s) 345, 2388, 2439, 2490, 2541, 2643
AccII CGCG 2 cut(s) 22, 1149
AccIII TCCGGA 7 cut(s) 2401, 2452, 2503, 2554, 2605, 2663, 3357
AciI CCGC 8 cut(s) 185, 642, 1361, 1428, 1462, 2065, 2380, 3186
AclI AACGTT 1 cut(s) 2203
AclWI GGATC 8 cut(s) 191, 204, 424, 437, 2148, 2270, 3010, 3196
AcuI CTGAAG 4 cut(s) 129, 2022, 2330, 3438
AcvI CACGTG 1 cut(s) 3005
AcyI GRCGYC 1 cut(s) 2145
AfaI GTAC 8 cut(s) 312, 716, 1353, 1374, 1476, 1540, 2799, 2867
AfiI CCNNNNNNNGG 6 cut(s) 399, 400, 1671, 1717, 2794, 3357
AflIII ACRYGT 2 cut(s) 160, 2826
AhlI ACTAGT 1 cut(s) 3331
AjnI CCWGG 8 cut(s) 434, 1710, 2160, 2424, 2475, 2526, 2577, 2628
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
Alw21I GWGCWC 1 cut(s) 1239
Alw26I GTCTC 6 cut(s) 193, 224, 1106, 1338, 3281, 3341
AlwI GGATC 8 cut(s) 191, 204, 424, 437, 2148, 2270, 3010, 3196
AlwNI CAGNNNCTG 6 cut(s) 592, 2431, 2482, 2533, 2584, 2635
Ama87I CYCGRG 1 cut(s) 2852
Aor13HI TCCGGA 7 cut(s) 2401, 2452, 2503, 2554, 2605, 2663, 3357
AoxI GGCC 3 cut(s) 1479, 1713, 3153
ApeKI GCWGC 7 cut(s) 494, 704, 1619, 2234, 2237, 2961, 3398
Asp700I GAANNNNTTC 1 cut(s) 3048
Asp718I GGTACC 2 cut(s) 1372, 2797
AspA2I CCTAGG 1 cut(s) 2680
AspLEI GCGC 5 cut(s) 22, 1939, 2223, 3440, 3460
AspS9I GGNCC 1 cut(s) 366
AsuHPI GGTGA 5 cut(s) 852, 1532, 1598, 1876, 2986
AvaI CYCGRG 1 cut(s) 2852
AvaII GGWCC 1 cut(s) 366
AvrII CCTAGG 1 cut(s) 2680
AxyI CCTNAGG 1 cut(s) 3020
BamHI GGATCC 2 cut(s) 196, 429
BanI GGYRCC 2 cut(s) 1372, 2797
BarI GAAGNNNNNNTAC 2 cut(s) 2790, 2822
BbrPI CACGTG 1 cut(s) 3005
BbsI GAAGAC 4 cut(s) 274, 405, 1136, 1794
Bbv12I GWGCWC 1 cut(s) 1239
BbvI GCAGC 7 cut(s) 481, 691, 1631, 2246, 2249, 2973, 3385
BccI CCATC 7 cut(s) 67, 642, 1665, 2778, 2856, 3233, 3388
BceAI ACGGC 2 cut(s) 1321, 2246
BcgI CGANNNNNNTGC 8 cut(s) 513, 547, 982, 1016, 2833, 2867, 3380, 3414
BciT130I CCWGG 8 cut(s) 436, 1712, 2162, 2426, 2477, 2528, 2579, 2630
BclI TGATCA 2 cut(s) 1528, 1798
BcoDI GTCTC 6 cut(s) 193, 224, 1106, 1338, 3281, 3341
BcuI ACTAGT 1 cut(s) 3331
BfaI CTAG 6 cut(s) 621, 1320, 2681, 2958, 3323, 3332
BfmI CTRYAG 3 cut(s) 270, 870, 3108
BfoI RGCGCY 2 cut(s) 2224, 3461
BfuAI ACCTGC 1 cut(s) 767
BglI GCCNNNNNGGC 1 cut(s) 2775
BglII AGATCT 1 cut(s) 2092
BisI GCNGC 7 cut(s) 495, 705, 1620, 2235, 2238, 2962, 3399
BlnI CCTAGG 1 cut(s) 2680
BlsI GCNGC 7 cut(s) 496, 706, 1621, 2236, 2239, 2963, 3400
BmcAI AGTACT 1 cut(s) 312
Bme1390I CCNGG 8 cut(s) 436, 1712, 2162, 2426, 2477, 2528, 2579, 2630
Bme18I GGWCC 1 cut(s) 366
BmeT110I CYCGRG 1 cut(s) 2852
BmgT120I GGNCC 1 cut(s) 366
BmrFI CCNGG 8 cut(s) 436, 1712, 2162, 2426, 2477, 2528, 2579, 2630
BmrI ACTGGG 1 cut(s) 1831
BmuI ACTGGG 1 cut(s) 1831
BpiI GAAGAC 4 cut(s) 274, 405, 1136, 1794
BplI GAGNNNNNCTC 2 cut(s) 1320, 1352
BpmI CTGGAG 2 cut(s) 890, 1694
BpuEI CTTGAG 2 cut(s) 2309, 3134
Bsa29I ATCGAT 1 cut(s) 225
BsaAI YACGTR 3 cut(s) 697, 2827, 3005
BsaBI GATNNNNATC 1 cut(s) 1508
BsaHI GRCGYC 1 cut(s) 2145
BsaI GGTCTC 3 cut(s) 193, 1106, 3341
BsaJI CCNNGG 8 cut(s) 434, 596, 1716, 2262, 2629, 2680, 2929, 2985
BsaWI WCCGGW 8 cut(s) 1667, 2401, 2452, 2503, 2554, 2605, 2663, 3357
BsaXI ACNNNNNCTCC 6 cut(s) 362, 368, 374, 392, 398, 404
Bsc4I CCNNNNNNNGG 6 cut(s) 399, 400, 1671, 1717, 2794, 3357
Bse1I ACTGG 7 cut(s) 198, 368, 586, 907, 1008, 1442, 1837
Bse21I CCTNAGG 1 cut(s) 3020
Bse3DI GCAATG 2 cut(s) 2302, 2971
Bse8I GATNNNNATC 1 cut(s) 1508
BseAI TCCGGA 7 cut(s) 2401, 2452, 2503, 2554, 2605, 2663, 3357
BseBI CCWGG 8 cut(s) 436, 1712, 2162, 2426, 2477, 2528, 2579, 2630
BseCI ATCGAT 1 cut(s) 225
BseDI CCNNGG 8 cut(s) 434, 596, 1716, 2262, 2629, 2680, 2929, 2985
BseJI GATNNNNATC 1 cut(s) 1508
BseLI CCNNNNNNNGG 6 cut(s) 399, 400, 1671, 1717, 2794, 3357
BseMI GCAATG 2 cut(s) 2302, 2971
BseNI ACTGG 7 cut(s) 198, 368, 586, 907, 1008, 1442, 1837
BseRI GAGGAG 1 cut(s) 3299
BseXI GCAGC 7 cut(s) 481, 691, 1631, 2246, 2249, 2973, 3385
BseYI CCCAGC 1 cut(s) 3057
Bsh1236I CGCG 2 cut(s) 22, 1149
Bsh1285I CGRYCG 1 cut(s) 290
BshFI GGCC 3 cut(s) 1481, 1715, 3155
BshNI GGYRCC 2 cut(s) 1372, 2797
BshVI ATCGAT 1 cut(s) 225
BsiEI CGRYCG 1 cut(s) 290
BsiHKAI GWGCWC 1 cut(s) 1239
BsiHKCI CYCGRG 1 cut(s) 2852
BslFI GGGAC 1 cut(s) 2000
BslI CCNNNNNNNGG 6 cut(s) 399, 400, 1671, 1717, 2794, 3357
BsmAI GTCTC 6 cut(s) 193, 224, 1106, 1338, 3281, 3341
BsmFI GGGAC 1 cut(s) 2000
BsmI GAATGC 2 cut(s) 1464, 2788
BsnI GGCC 3 cut(s) 1481, 1715, 3155
Bso31I GGTCTC 3 cut(s) 193, 1106, 3341
BsoBI CYCGRG 1 cut(s) 2852
Bsp1286I GDGCHC 1 cut(s) 1239
Bsp13I TCCGGA 7 cut(s) 2401, 2452, 2503, 2554, 2605, 2663, 3357
Bsp19I CCATGG 1 cut(s) 1716
BspACI CCGC 8 cut(s) 185, 642, 1361, 1428, 1462, 2065, 2380, 3186
BspANI GGCC 3 cut(s) 1481, 1715, 3155
BspDI ATCGAT 1 cut(s) 225
BspEI TCCGGA 7 cut(s) 2401, 2452, 2503, 2554, 2605, 2663, 3357
BspFNI CGCG 2 cut(s) 22, 1149
BspHI TCATGA 1 cut(s) 3310
BspMI ACCTGC 1 cut(s) 767
BspPI GGATC 8 cut(s) 191, 204, 424, 437, 2148, 2270, 3010, 3196
BspT107I GGYRCC 2 cut(s) 1372, 2797
BspTNI GGTCTC 3 cut(s) 193, 1106, 3341
BsrBI CCGCTC 1 cut(s) 2380
BsrDI GCAATG 2 cut(s) 2302, 2971
BsrI ACTGG 7 cut(s) 198, 368, 586, 907, 1008, 1442, 1837
BssECI CCNNGG 8 cut(s) 434, 596, 1716, 2262, 2629, 2680, 2929, 2985
BssNI GRCGYC 1 cut(s) 2145
BssT1I CCWWGG 3 cut(s) 596, 1716, 2680
Bst2UI CCWGG 8 cut(s) 436, 1712, 2162, 2426, 2477, 2528, 2579, 2630
Bst6I CTCTTC 2 cut(s) 419, 1659
BstACI GRCGYC 1 cut(s) 2145
BstAPI GCANNNNNTGC 2 cut(s) 2258, 2676
BstBAI YACGTR 3 cut(s) 697, 2827, 3005
BstC8I GCNNGC 7 cut(s) 24, 526, 749, 1404, 1408, 2259, 2339
BstDSI CCRYGG 2 cut(s) 1716, 2262
BstENI CCTNNNNNAGG 1 cut(s) 2792
BstFNI CGCG 2 cut(s) 22, 1149
BstH2I RGCGCY 2 cut(s) 2224, 3461
BstHHI GCGC 5 cut(s) 22, 1939, 2223, 3440, 3460
BstMAI GTCTC 6 cut(s) 193, 224, 1106, 1338, 3281, 3341
BstMCI CGRYCG 1 cut(s) 290
BstMWI GCNNNNNNNGC 8 cut(s) 125, 534, 990, 2258, 2676, 2775, 3263, 3407
BstNI CCWGG 8 cut(s) 436, 1712, 2162, 2426, 2477, 2528, 2579, 2630
BstNSI RCATGY 3 cut(s) 164, 747, 2261
BstSCI CCNGG 8 cut(s) 434, 1710, 2160, 2424, 2475, 2526, 2577, 2628
BstSFI CTRYAG 3 cut(s) 270, 870, 3108
BstUI CGCG 2 cut(s) 22, 1149
BstV1I GCAGC 7 cut(s) 481, 691, 1631, 2246, 2249, 2973, 3385
BstV2I GAAGAC 4 cut(s) 274, 405, 1136, 1794
BstX2I RGATCY 4 cut(s) 196, 429, 2092, 3015
BstYI RGATCY 4 cut(s) 196, 429, 2092, 3015
Bsu15I ATCGAT 1 cut(s) 225
Bsu36I CCTNAGG 1 cut(s) 3020
BsuRI GGCC 3 cut(s) 1481, 1715, 3155
BsuTUI ATCGAT 1 cut(s) 225
BtgI CCRYGG 2 cut(s) 1716, 2262
BtsI GCAGTG 1 cut(s) 3200
BtsIMutI CAGTG 5 cut(s) 191, 348, 1794, 2612, 3200
BveI ACCTGC 1 cut(s) 767
Cac8I GCNNGC 7 cut(s) 24, 526, 749, 1404, 1408, 2259, 2339
CaiI CAGNNNCTG 6 cut(s) 592, 2431, 2482, 2533, 2584, 2635
CciI TCATGA 1 cut(s) 3310
CfoI GCGC 5 cut(s) 22, 1939, 2223, 3440, 3460
Cfr13I GGNCC 1 cut(s) 366
ClaI ATCGAT 1 cut(s) 225
CseI GACGC 2 cut(s) 1155, 2711
Csp6I GTAC 8 cut(s) 311, 715, 1352, 1373, 1475, 1539, 2798, 2866
CspCI CAANNNNNGTGG 2 cut(s) 2892, 2927
CviQI GTAC 8 cut(s) 311, 715, 1352, 1373, 1475, 1539, 2798, 2866
DraI TTTAAA 6 cut(s) 972, 1416, 1570, 1977, 2194, 2209
Eam1104I CTCTTC 2 cut(s) 419, 1659
EarI CTCTTC 2 cut(s) 419, 1659
EciI GGCGGA 1 cut(s) 2080
Eco130I CCWWGG 3 cut(s) 596, 1716, 2680
Eco31I GGTCTC 3 cut(s) 193, 1106, 3341
Eco32I GATATC 3 cut(s) 51, 1204, 2749
Eco47I GGWCC 1 cut(s) 366
Eco57I CTGAAG 4 cut(s) 129, 2022, 2330, 3438
Eco72I CACGTG 1 cut(s) 3005
Eco81I CCTNAGG 1 cut(s) 3020
Eco88I CYCGRG 1 cut(s) 2852
EcoNI CCTNNNNNAGG 1 cut(s) 2792
EcoRI GAATTC 1 cut(s) 3217
EcoRII CCWGG 8 cut(s) 434, 1710, 2160, 2424, 2475, 2526, 2577, 2628
EcoRV GATATC 3 cut(s) 51, 1204, 2749
EcoT14I CCWWGG 3 cut(s) 596, 1716, 2680
EcoT22I ATGCAT 1 cut(s) 2672
ErhI CCWWGG 3 cut(s) 596, 1716, 2680
FaqI GGGAC 1 cut(s) 2000
FbaI TGATCA 2 cut(s) 1528, 1798
FblI GTMKAC 6 cut(s) 345, 2388, 2439, 2490, 2541, 2643
Fnu4HI GCNGC 7 cut(s) 495, 705, 1620, 2235, 2238, 2962, 3399
Fsp4HI GCNGC 7 cut(s) 495, 705, 1620, 2235, 2238, 2962, 3399
FspBI CTAG 6 cut(s) 621, 1320, 2681, 2958, 3323, 3332
FspI TGCGCA 1 cut(s) 1938
GlaI GCGC 5 cut(s) 21, 1938, 2222, 3439, 3459
GluI GCNGC 7 cut(s) 495, 705, 1620, 2235, 2238, 2962, 3399
GsaI CCCAGC 1 cut(s) 3061
GsuI CTGGAG 2 cut(s) 890, 1694
HaeII RGCGCY 2 cut(s) 2224, 3461
HaeIII GGCC 3 cut(s) 1481, 1715, 3155
HgaI GACGC 2 cut(s) 1155, 2711
HhaI GCGC 5 cut(s) 22, 1939, 2223, 3440, 3460
Hin1I GRCGYC 1 cut(s) 2145
Hin6I GCGC 5 cut(s) 20, 1937, 2221, 3438, 3458
HinP1I GCGC 5 cut(s) 20, 1937, 2221, 3438, 3458
HincII GTYRAC 2 cut(s) 346, 460
HindII GTYRAC 2 cut(s) 346, 460
HindIII AAGCTT 1 cut(s) 1490
HpaI GTTAAC 1 cut(s) 460
HphI GGTGA 5 cut(s) 852, 1532, 1598, 1876, 2986
Hpy166II GTNNAC 9 cut(s) 346, 460, 2389, 2440, 2491, 2542, 2644, 2866, 3276
Hpy8I GTNNAC 9 cut(s) 346, 460, 2389, 2440, 2491, 2542, 2644, 2866, 3276
Hpy99I CGWCG 1 cut(s) 1139
HpyF10VI GCNNNNNNNGC 8 cut(s) 125, 534, 990, 2258, 2676, 2775, 3263, 3407
Hsp92I GRCGYC 1 cut(s) 2145
HspAI GCGC 5 cut(s) 20, 1937, 2221, 3438, 3458
Kpn2I TCCGGA 7 cut(s) 2401, 2452, 2503, 2554, 2605, 2663, 3357
KpnI GGTACC 2 cut(s) 1376, 2801
Ksp22I TGATCA 2 cut(s) 1528, 1798
KspAI GTTAAC 1 cut(s) 460
LmnI GCTCC 9 cut(s) 88, 521, 570, 1234, 1342, 2428, 2479, 2530, 2581
Lsp1109I GCAGC 7 cut(s) 481, 691, 1631, 2246, 2249, 2973, 3385
MaeI CTAG 6 cut(s) 621, 1320, 2681, 2958, 3323, 3332
MaeIII GTNAC 6 cut(s) 914, 937, 1288, 1919, 3000, 3419
MbiI CCGCTC 1 cut(s) 2380
MfeI CAATTG 1 cut(s) 2937
MflI RGATCY 4 cut(s) 196, 429, 2092, 3015
MhlI GDGCHC 1 cut(s) 1239
MlyI GAGTC 9 cut(s) 365, 371, 377, 383, 1340, 2087, 2117, 2864, 3008
MmeI TCCRAC 7 cut(s) 393, 405, 411, 1089, 1682, 1746, 2811
Mph1103I ATGCAT 1 cut(s) 2672
MroI TCCGGA 7 cut(s) 2401, 2452, 2503, 2554, 2605, 2663, 3357
MroXI GAANNNNTTC 1 cut(s) 3048
MspR9I CCNGG 8 cut(s) 436, 1712, 2162, 2426, 2477, 2528, 2579, 2630
MunI CAATTG 1 cut(s) 2937
Mva1269I GAATGC 2 cut(s) 1464, 2788
MvaI CCWGG 8 cut(s) 436, 1712, 2162, 2426, 2477, 2528, 2579, 2630
MvnI CGCG 2 cut(s) 22, 1149
MwoI GCNNNNNNNGC 8 cut(s) 125, 534, 990, 2258, 2676, 2775, 3263, 3407
NcoI CCATGG 1 cut(s) 1716
NmeAIII GCCGAG 1 cut(s) 2754
NmuCI GTSAC 2 cut(s) 1288, 3000
NsbI TGCGCA 1 cut(s) 1938
NsiI ATGCAT 1 cut(s) 2672
NspI RCATGY 3 cut(s) 164, 747, 2261
PaeI GCATGC 1 cut(s) 2261
PaeR7I CTCGAG 1 cut(s) 2852
PagI TCATGA 1 cut(s) 3310
PciI ACATGT 1 cut(s) 160
PctI GAATGC 2 cut(s) 1464, 2788
PdmI GAANNNNTTC 1 cut(s) 3048
PfeI GAWTC 9 cut(s) 888, 1139, 1227, 1323, 1390, 2267, 2290, 2660, 3145
PflMI CCANNNNNTGG 2 cut(s) 1671, 1717
PfoI TCCNGGA 1 cut(s) 2160
PkrI GCNGC 7 cut(s) 496, 706, 1621, 2236, 2239, 2963, 3400
Ple19I CGATCG 1 cut(s) 290
PleI GAGTC 9 cut(s) 365, 371, 377, 383, 1339, 2086, 2117, 2863, 3007
PmaCI CACGTG 1 cut(s) 3005
PmlI CACGTG 1 cut(s) 3005
PpsI GAGTC 9 cut(s) 365, 371, 377, 383, 1339, 2086, 2117, 2863, 3007
Ppu21I YACGTR 3 cut(s) 697, 2827, 3005
PscI ACATGT 1 cut(s) 160
PsiI TTATAA 1 cut(s) 3090
Psp1406I AACGTT 1 cut(s) 2203
Psp6I CCWGG 8 cut(s) 434, 1710, 2160, 2424, 2475, 2526, 2577, 2628
PspCI CACGTG 1 cut(s) 3005
PspFI CCCAGC 1 cut(s) 3057
PspGI CCWGG 8 cut(s) 434, 1710, 2160, 2424, 2475, 2526, 2577, 2628
PspPI GGNCC 1 cut(s) 366
PstNI CAGNNNCTG 6 cut(s) 592, 2431, 2482, 2533, 2584, 2635
PsuI RGATCY 4 cut(s) 196, 429, 2092, 3015
PvuI CGATCG 1 cut(s) 290
RsaI GTAC 8 cut(s) 312, 716, 1353, 1374, 1476, 1540, 2799, 2867
RsaNI GTAC 8 cut(s) 311, 715, 1352, 1373, 1475, 1539, 2798, 2866
SalI GTCGAC 1 cut(s) 344
SatI GCNGC 7 cut(s) 495, 705, 1620, 2235, 2238, 2962, 3399
Sau96I GGNCC 1 cut(s) 366
ScaI AGTACT 1 cut(s) 312
SchI GAGTC 9 cut(s) 365, 371, 377, 383, 1340, 2087, 2117, 2864, 3008
ScrFI CCNGG 8 cut(s) 436, 1712, 2162, 2426, 2477, 2528, 2579, 2630
SduI GDGCHC 1 cut(s) 1239
SfcI CTRYAG 3 cut(s) 270, 870, 3108
Sfr274I CTCGAG 1 cut(s) 2852
SinI GGWCC 1 cut(s) 366
SlaI CTCGAG 1 cut(s) 2852
SmiI ATTTAAAT 1 cut(s) 2194
SmlI CTYRAG 3 cut(s) 2324, 2852, 3149
SmoI CTYRAG 3 cut(s) 2324, 2852, 3149
SpeI ACTAGT 1 cut(s) 3331
SphI GCATGC 1 cut(s) 2261
SsiI CCGC 8 cut(s) 185, 642, 1361, 1428, 1462, 2065, 2380, 3186
SspI AATATT 4 cut(s) 90, 1198, 1535, 3076
SspMI CTAG 6 cut(s) 621, 1320, 2681, 2958, 3323, 3332
StyD4I CCNGG 8 cut(s) 434, 1710, 2160, 2424, 2475, 2526, 2577, 2628
StyI CCWWGG 3 cut(s) 596, 1716, 2680
SwaI ATTTAAAT 1 cut(s) 2194
TaqI TCGA 7 cut(s) 225, 345, 879, 1002, 2152, 2853, 3204
TaqII GACCGA 1 cut(s) 1148
TatI WGTACW 2 cut(s) 310, 1474
TfiI GAWTC 9 cut(s) 888, 1139, 1227, 1323, 1390, 2267, 2290, 2660, 3145
TscAI CASTG 5 cut(s) 198, 355, 1801, 2619, 3200
TseFI GTSAC 2 cut(s) 1288, 3000
TseI GCWGC 7 cut(s) 494, 704, 1619, 2234, 2237, 2961, 3398
Tsp45I GTSAC 2 cut(s) 1288, 3000
TspGWI ACGGA 3 cut(s) 311, 2146, 3394
TspRI CASTG 5 cut(s) 198, 355, 1801, 2619, 3200
Van91I CCANNNNNTGG 2 cut(s) 1671, 1717
VpaK11BI GGWCC 1 cut(s) 366
XagI CCTNNNNNAGG 1 cut(s) 2792
XbaI TCTAGA 2 cut(s) 1319, 3322
XceI RCATGY 3 cut(s) 164, 747, 2261
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XhoI CTCGAG 1 cut(s) 2852
XmaJI CCTAGG 1 cut(s) 2680
XmiI GTMKAC 6 cut(s) 345, 2388, 2439, 2490, 2541, 2643
XmnI GAANNNNTTC 1 cut(s) 3048
XspI CTAG 6 cut(s) 621, 1320, 2681, 2958, 3323, 3332
ZraI GACGTC 1 cut(s) 2146
ZrmI AGTACT 1 cut(s) 312
Zsp2I ATGCAT 1 cut(s) 2672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.