MD01G1182100.v1.1

f-box protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
28092561 .. 28094807
2247 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1182100.v1.1.491

Sequence Viewer

Length: 1506 bp
ATGGGATACAGAGCAACAGCGGAAGACGACCCTGAAACGATGTCGTTACAGGCAGTGAAAGCGAACTCAAAGACCGGCCCTTTACCGTCGTCGAAGCGGCGGACGGCGACCTGGGCAGACATCTGGCTCAAGAGGAACACCACCCCTCTCAAGAACCTGATATTCGCTATGCAGCTGGCTTCCCCCAAATCGAAACCCGCCCACGAGACCCTTATCCCCCATTGCGAAAACATTGATCGGACTTCCGTGTTATCCGACGAAATCCTCCTCAAGATTCTCGCCAAGCTGCCGGAGTCGCAGCGGAAGCCTAGCTCCGTCGTCTGCAAGCGGTGGCTCAACCTCCACGGCTGCCTTGTACGGTCAATCAAGGTCTTGGACTGGAACTTTCTCCAATCTGGTCGGTTAATTTCTCGGTTTCCCAATCTGAATCAGGTGGACCTGCTAGCTGGGTCGTTGATTCCGGACCAAAATTCTGAAATTTTGTTGAGTTGTGGGATGTTTCCGGTGCATACCGGTTTCGGGTTTTCGCCGAATCAGCGAGTTCTGGAATCGAGTTTGCTTCCAGCTGAAGTTGTTGATAGAGGGCTTGACGGGTTGGCGAGCGGGTGCCCCAACTTGCGGAAGCTTGTGGTGATTGGCGCTAGTGAATTGGGGCTGCTGAGTGTAGCAGAGGAGTGCCCCACATTGCAAGAACTGGAATTGCACAAGTGCAGCGACAATGTGCTGCGTGGGATTGCGGTGTGTGAGAATTTGCAGGTGTTGAAGCTGGTTGCAAATGTAGAGGGACTTTACAGTTCAGTGGTTTCAGATATCGGATTGACGATTTTAGCTCAAGGGTGTACTAGATTGGTAAAGCTGGAGCTTTGGGGATGTGAGGGTAGCTTTGATGGGATTAAGGCAATTGGGCAGTGTTGCCAAATGTTGGAGGAGCTGACTTTCTGTGATCATAGGATGGATGGTGGGTGGGTGGCCGCCCTTTCGTACTGCGAAAATTTGAAGACTTTGAGGTTTCAATCGTGTAAGAGGATTGAAACTGTTCCGGGGCCGGACGAGTATTTGGATGCTTGTCCGGCTCTGGAAAGGTTGCATTTGGAGAAATGTCAGCTGAGGGACAAGAAGAGTGTGGGAGCTTTGTTTATGGTGTGTGGAGCCGCCAGGGAGATTGTTTTACAGGACTGTTGGGGATTGGAGAATGATATGTTCATGCTAGCAAACACTTGCAGGAGAGTGAAGTTCCTATCACTAGAAGGATGCTCGGTACTAACAACAGAGGGTCTGGAGTCTGTAATTCTTCCCTGGACGGAGCTCGAATGTCTTCGAGTAGTGTCGTGCAAGAACTTAAAGGACAAGGAGATATCTCCTGCACTCGTAACCTTATTTTCTACTCTCAAAGAGCTGCAATGGAGACCGGAAACCAAATCTCTTCTCCCGTCAAGCATTATCGGAACCATCATAGGAAAGAAAGGCAGTAGATTTTTCAGGAAGAGTCGAAGACACGAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

502

Amino Acids

55.6

Weight (kDa)

7.95

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 745
Acc36I ACCTGC 2 cut(s) 447, 745
AccB1I GGYRCC 1 cut(s) 606
AccB7I CCANNNNNTGG 1 cut(s) 922
AccBSI CCGCTC 1 cut(s) 603
AccIII TCCGGA 1 cut(s) 460
AcoI YGGCCR 1 cut(s) 969
AcsI RAATTY 4 cut(s) 469, 477, 748, 991
AcuI CTGAAG 1 cut(s) 588
AfaI GTAC 4 cut(s) 357, 841, 983, 1260
AfiI CCNNNNNNNGG 3 cut(s) 519, 618, 922
AgeI ACCGGT 1 cut(s) 512
AgsI TTSAA 4 cut(s) 763, 997, 1013, 1031
AjnI CCWGG 3 cut(s) 110, 1154, 1295
Alw21I GWGCWC 1 cut(s) 1308
Alw26I GTCTC 2 cut(s) 200, 1399
Aor13HI TCCGGA 1 cut(s) 460
AoxI GGCC 3 cut(s) 76, 969, 1043
ApeKI GCWGC 8 cut(s) 172, 286, 298, 348, 655, 711, 724, 1396
ApoI RAATTY 4 cut(s) 469, 477, 748, 991
AsiGI ACCGGT 1 cut(s) 512
Asp700I GAANNNNTTC 2 cut(s) 1035, 1314
AspLEI GCGC 1 cut(s) 641
AspS9I GGNCC 4 cut(s) 77, 436, 463, 1043
AsuC2I CCSGG 1 cut(s) 1041
AsuHPI GGTGA 1 cut(s) 643
AsuNHI GCTAGC 2 cut(s) 442, 1207
AvaII GGWCC 2 cut(s) 436, 463
BaeGI GKGCMC 2 cut(s) 611, 680
BanI GGYRCC 1 cut(s) 606
BanII GRGCYC 1 cut(s) 1308
BauI CACGAG 2 cut(s) 203, 1496
BbsI GAAGAC 4 cut(s) 30, 1004, 1307, 1498
Bbv12I GWGCWC 1 cut(s) 1308
BbvCI CCTCAGC 1 cut(s) 1106
BbvI GCAGC 8 cut(s) 184, 273, 310, 335, 642, 711, 723, 1383
BccI CCATC 4 cut(s) 881, 946, 950, 1457
BceAI ACGGC 2 cut(s) 120, 361
BciT130I CCWGG 3 cut(s) 112, 1156, 1297
BclI TGATCA 1 cut(s) 943
BcnI CCSGG 1 cut(s) 1041
BcoDI GTCTC 2 cut(s) 200, 1399
BfaI CTAG 6 cut(s) 309, 443, 642, 843, 1208, 1244
BfoI RGCGCY 1 cut(s) 642
BfuAI ACCTGC 2 cut(s) 447, 745
BglII AGATCT 1 cut(s) 1500
Bme1390I CCNGG 4 cut(s) 112, 1041, 1156, 1297
Bme18I GGWCC 2 cut(s) 436, 463
BmgT120I GGNCC 4 cut(s) 77, 436, 463, 1043
BmiI GGNNCC 4 cut(s) 608, 1044, 1150, 1447
BmrFI CCNGG 4 cut(s) 112, 1041, 1156, 1297
BmsI GCATC 2 cut(s) 1051, 1241
BmtI GCTAGC 2 cut(s) 446, 1211
BpiI GAAGAC 4 cut(s) 30, 1004, 1307, 1498
BpmI CTGGAG 2 cut(s) 878, 1298
Bpu10I CCTNAGC 1 cut(s) 1106
BpuEI CTTGAG 4 cut(s) 113, 134, 254, 816
BpuMI CCSGG 1 cut(s) 1041
BsaI GGTCTC 2 cut(s) 200, 1399
BsaJI CCNNGG 5 cut(s) 111, 343, 1040, 1155, 1295
BsaWI WCCGGW 4 cut(s) 460, 502, 512, 1408
Bsc4I CCNNNNNNNGG 3 cut(s) 519, 618, 922
Bse118I RCCGGY 2 cut(s) 74, 512
Bse1I ACTGG 2 cut(s) 383, 699
Bse3DI GCAATG 3 cut(s) 220, 683, 1406
BseAI TCCGGA 1 cut(s) 460
BseBI CCWGG 3 cut(s) 112, 1156, 1297
BseDI CCNNGG 5 cut(s) 111, 343, 1040, 1155, 1295
BseGI GGATG 6 cut(s) 501, 875, 957, 961, 1066, 1256
BseLI CCNNNNNNNGG 3 cut(s) 519, 618, 922
BseMI GCAATG 3 cut(s) 220, 683, 1406
BseMII CTCAG 2 cut(s) 650, 1097
BseNI ACTGG 2 cut(s) 383, 699
BseRI GAGGAG 3 cut(s) 257, 686, 941
BseSI GKGCMC 2 cut(s) 611, 680
BseXI GCAGC 8 cut(s) 184, 273, 310, 335, 642, 711, 723, 1383
BseYI CCCAGC 1 cut(s) 446
BsgI GTGCAG 2 cut(s) 730, 1347
BshFI GGCC 3 cut(s) 78, 971, 1045
BshNI GGYRCC 1 cut(s) 606
BshTI ACCGGT 1 cut(s) 512
BsiHKAI GWGCWC 1 cut(s) 1308
BsiSI CCGG 9 cut(s) 75, 290, 461, 503, 513, 1040, 1046, 1070, 1409
BslFI GGGAC 2 cut(s) 798, 1124
BslI CCNNNNNNNGG 3 cut(s) 519, 618, 922
BsmAI GTCTC 2 cut(s) 200, 1399
BsmFI GGGAC 2 cut(s) 798, 1124
BsnI GGCC 3 cut(s) 78, 971, 1045
Bso31I GGTCTC 2 cut(s) 200, 1399
Bsp1286I GDGCHC 3 cut(s) 611, 680, 1308
Bsp13I TCCGGA 1 cut(s) 460
Bsp143I GATC 3 cut(s) 235, 943, 1500
BspANI GGCC 3 cut(s) 78, 971, 1045
BspCNI CTCAG 2 cut(s) 651, 1098
BspEI TCCGGA 1 cut(s) 460
BspLI GGNNCC 4 cut(s) 608, 1044, 1150, 1447
BspMI ACCTGC 2 cut(s) 447, 745
BspOI GCTAGC 2 cut(s) 446, 1211
BspT107I GGYRCC 1 cut(s) 606
BspTNI GGTCTC 2 cut(s) 200, 1399
BsrBI CCGCTC 1 cut(s) 603
BsrDI GCAATG 3 cut(s) 220, 683, 1406
BsrFI RCCGGY 2 cut(s) 74, 512
BsrI ACTGG 2 cut(s) 383, 699
BssAI RCCGGY 2 cut(s) 74, 512
BssECI CCNNGG 5 cut(s) 111, 343, 1040, 1155, 1295
BssMI GATC 3 cut(s) 235, 943, 1500
BssSI CACGAG 2 cut(s) 203, 1496
Bst2BI CACGAG 2 cut(s) 203, 1496
Bst2UI CCWGG 3 cut(s) 112, 1156, 1297
Bst4CI ACNGT 5 cut(s) 87, 360, 794, 1036, 1178
Bst6I CTCTTC 3 cut(s) 1112, 1428, 1478
BstC8I GCNNGC 5 cut(s) 177, 326, 444, 601, 1209
BstDEI CTNAG 2 cut(s) 659, 1106
BstDSI CCRYGG 1 cut(s) 343
BstF5I GGATG 6 cut(s) 501, 875, 957, 961, 1066, 1256
BstH2I RGCGCY 1 cut(s) 642
BstHHI GCGC 1 cut(s) 641
BstKTI GATC 3 cut(s) 238, 946, 1503
BstMAI GTCTC 2 cut(s) 200, 1399
BstMBI GATC 3 cut(s) 235, 943, 1500
BstMWI GCNNNNNNNGC 6 cut(s) 59, 113, 295, 304, 535, 1070
BstNI CCWGG 3 cut(s) 112, 1156, 1297
BstSCI CCNGG 4 cut(s) 110, 1039, 1154, 1295
BstSLI GKGCMC 2 cut(s) 611, 680
BstV1I GCAGC 8 cut(s) 184, 273, 310, 335, 642, 711, 723, 1383
BstV2I GAAGAC 4 cut(s) 30, 1004, 1307, 1498
BstX2I RGATCY 1 cut(s) 1500
BstYI RGATCY 1 cut(s) 1500
BsuRI GGCC 3 cut(s) 78, 971, 1045
BtgI CCRYGG 1 cut(s) 343
BtsCI GGATG 6 cut(s) 501, 875, 957, 961, 1066, 1256
BtsI GCAGTG 2 cut(s) 60, 914
BtsIMutI CAGTG 3 cut(s) 60, 804, 914
BveI ACCTGC 2 cut(s) 447, 745
Cac8I GCNNGC 5 cut(s) 177, 326, 444, 601, 1209
CfoI GCGC 1 cut(s) 641
Cfr10I RCCGGY 2 cut(s) 74, 512
Cfr13I GGNCC 4 cut(s) 77, 436, 463, 1043
Csp6I GTAC 4 cut(s) 356, 840, 982, 1259
CspAI ACCGGT 1 cut(s) 512
CviAII CATG 1 cut(s) 1204
CviQI GTAC 4 cut(s) 356, 840, 982, 1259
DdeI CTNAG 2 cut(s) 659, 1106
DpnI GATC 3 cut(s) 237, 945, 1502
DpnII GATC 3 cut(s) 235, 943, 1500
EaeI YGGCCR 1 cut(s) 969
Eam1104I CTCTTC 3 cut(s) 1112, 1428, 1478
EarI CTCTTC 3 cut(s) 1112, 1428, 1478
EciI GGCGGA 1 cut(s) 115
Ecl136II GAGCTC 1 cut(s) 1306
Eco24I GRGCYC 1 cut(s) 1308
Eco31I GGTCTC 2 cut(s) 200, 1399
Eco32I GATATC 2 cut(s) 811, 1356
Eco47I GGWCC 2 cut(s) 436, 463
Eco53kI GAGCTC 1 cut(s) 1306
Eco57I CTGAAG 1 cut(s) 588
EcoICRI GAGCTC 1 cut(s) 1306
EcoRII CCWGG 3 cut(s) 110, 1154, 1295
EcoRV GATATC 2 cut(s) 811, 1356
EcoT38I GRGCYC 1 cut(s) 1308
FaeI CATG 1 cut(s) 1207
FaiI YATR 7 cut(s) 170, 510, 948, 1139, 1199, 1205, 1454
FaqI GGGAC 2 cut(s) 798, 1124
FatI CATG 1 cut(s) 1203
FauI CCCGC 2 cut(s) 205, 596
FbaI TGATCA 1 cut(s) 943
FokI GGATG 6 cut(s) 508, 882, 964, 968, 1073, 1263
FriOI GRGCYC 1 cut(s) 1308
FspBI CTAG 6 cut(s) 309, 443, 642, 843, 1208, 1244
GlaI GCGC 1 cut(s) 640
GsaI CCCAGC 1 cut(s) 450
GsuI CTGGAG 2 cut(s) 878, 1298
HaeII RGCGCY 1 cut(s) 642
HaeIII GGCC 3 cut(s) 78, 971, 1045
HapII CCGG 9 cut(s) 75, 290, 461, 503, 513, 1040, 1046, 1070, 1409
HhaI GCGC 1 cut(s) 641
Hin1II CATG 1 cut(s) 1207
Hin6I GCGC 1 cut(s) 639
HinP1I GCGC 1 cut(s) 639
HindIII AAGCTT 1 cut(s) 623
HinfI GANTC 8 cut(s) 274, 293, 427, 457, 532, 548, 1280, 1486
HpaII CCGG 9 cut(s) 75, 290, 461, 503, 513, 1040, 1046, 1070, 1409
HphI GGTGA 1 cut(s) 643
Hpy166II GTNNAC 2 cut(s) 436, 840
Hpy188I TCNGA 8 cut(s) 240, 256, 426, 475, 808, 815, 1445, 1505
Hpy188III TCNNGA 8 cut(s) 130, 151, 271, 461, 545, 1076, 1277, 1480
Hpy8I GTNNAC 2 cut(s) 436, 840
Hpy99I CGWCG 4 cut(s) 91, 94, 260, 320
HpyAV CCTTC 1 cut(s) 1241
HpyCH4III ACNGT 5 cut(s) 87, 360, 794, 1036, 1178
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 113, 295, 304, 535, 1070
HpyF3I CTNAG 2 cut(s) 659, 1106
Hsp92II CATG 1 cut(s) 1207
HspAI GCGC 1 cut(s) 639
Kpn2I TCCGGA 1 cut(s) 460
Ksp22I TGATCA 1 cut(s) 943
Kzo9I GATC 3 cut(s) 235, 943, 1500
LmnI GCTCC 6 cut(s) 317, 859, 928, 1127, 1148, 1303
Lsp1109I GCAGC 8 cut(s) 184, 273, 310, 335, 642, 711, 723, 1383
LweI GCATC 2 cut(s) 1051, 1241
MaeI CTAG 6 cut(s) 309, 443, 642, 843, 1208, 1244
MaeIII GTNAC 2 cut(s) 45, 1369
MalI GATC 3 cut(s) 237, 945, 1502
MbiI CCGCTC 1 cut(s) 603
MboI GATC 3 cut(s) 235, 943, 1500
MboII GAAGA 8 cut(s) 35, 1009, 1129, 1283, 1307, 1415, 1495, 1503
MfeI CAATTG 1 cut(s) 900
MflI RGATCY 1 cut(s) 1500
MhlI GDGCHC 3 cut(s) 611, 680, 1308
MluCI AATT 9 cut(s) 405, 469, 477, 647, 698, 748, 900, 991, 1287
MlyI GAGTC 3 cut(s) 302, 1289, 1495
MmeI TCCRAC 2 cut(s) 279, 903
MroI TCCGGA 1 cut(s) 460
MroXI GAANNNNTTC 2 cut(s) 1035, 1314
MseI TTAA 3 cut(s) 404, 894, 1340
MspA1I CMGCKG 5 cut(s) 20, 175, 301, 566, 1105
MspI CCGG 9 cut(s) 75, 290, 461, 503, 513, 1040, 1046, 1070, 1409
MspR9I CCNGG 4 cut(s) 112, 1041, 1156, 1297
MunI CAATTG 1 cut(s) 900
MvaI CCWGG 3 cut(s) 112, 1156, 1297
MwoI GCNNNNNNNGC 6 cut(s) 59, 113, 295, 304, 535, 1070
NciI CCSGG 1 cut(s) 1041
NdeII GATC 3 cut(s) 235, 943, 1500
NheI GCTAGC 2 cut(s) 442, 1207
NlaIII CATG 1 cut(s) 1207
NlaIV GGNNCC 4 cut(s) 608, 1044, 1150, 1447
PaqCI CACCTGC 1 cut(s) 745
PdmI GAANNNNTTC 2 cut(s) 1035, 1314
PfeI GAWTC 5 cut(s) 274, 427, 457, 532, 548
PflMI CCANNNNNTGG 1 cut(s) 922
PinAI ACCGGT 1 cut(s) 512
PleI GAGTC 3 cut(s) 301, 1288, 1494
PpsI GAGTC 3 cut(s) 301, 1288, 1494
Psp124BI GAGCTC 1 cut(s) 1308
Psp6I CCWGG 3 cut(s) 110, 1154, 1295
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 3 cut(s) 110, 1154, 1295
PspN4I GGNNCC 4 cut(s) 608, 1044, 1150, 1447
PspPI GGNCC 4 cut(s) 77, 436, 463, 1043
PsuI RGATCY 1 cut(s) 1500
PvuII CAGCTG 3 cut(s) 175, 566, 1105
RsaI GTAC 4 cut(s) 357, 841, 983, 1260
RsaNI GTAC 4 cut(s) 356, 840, 982, 1259
SacI GAGCTC 1 cut(s) 1308
SaqAI TTAA 3 cut(s) 404, 894, 1340
Sau3AI GATC 3 cut(s) 235, 943, 1500
Sau96I GGNCC 4 cut(s) 77, 436, 463, 1043
SchI GAGTC 3 cut(s) 302, 1289, 1495
ScrFI CCNGG 4 cut(s) 112, 1041, 1156, 1297
SduI GDGCHC 3 cut(s) 611, 680, 1308
SfaNI GCATC 2 cut(s) 1051, 1241
SinI GGWCC 2 cut(s) 436, 463
SmlI CTYRAG 4 cut(s) 128, 149, 269, 831
SmoI CTYRAG 4 cut(s) 128, 149, 269, 831
Sse9I AATT 9 cut(s) 405, 469, 477, 647, 698, 748, 900, 991, 1287
SspMI CTAG 6 cut(s) 309, 443, 642, 843, 1208, 1244
SstI GAGCTC 1 cut(s) 1308
StyD4I CCNGG 4 cut(s) 110, 1039, 1154, 1295
TaaI ACNGT 5 cut(s) 87, 360, 794, 1036, 1178
TaqI TCGA 6 cut(s) 92, 191, 551, 1308, 1318, 1489
TasI AATT 9 cut(s) 405, 469, 477, 647, 698, 748, 900, 991, 1287
TatI WGTACW 1 cut(s) 839
TauI GCSGC 3 cut(s) 100, 974, 1154
TfiI GAWTC 5 cut(s) 274, 427, 457, 532, 548
Tru1I TTAA 3 cut(s) 404, 894, 1340
Tru9I TTAA 3 cut(s) 404, 894, 1340
TscAI CASTG 3 cut(s) 60, 804, 914
TseI GCWGC 8 cut(s) 172, 286, 298, 348, 655, 711, 724, 1396
TspDTI ATGAA 1 cut(s) 1192
TspGWI ACGGA 3 cut(s) 235, 304, 1316
TspRI CASTG 3 cut(s) 60, 804, 914
Van91I CCANNNNNTGG 1 cut(s) 922
VpaK11BI GGWCC 2 cut(s) 436, 463
XapI RAATTY 4 cut(s) 469, 477, 748, 991
XmnI GAANNNNTTC 2 cut(s) 1035, 1314
XspI CTAG 6 cut(s) 309, 443, 642, 843, 1208, 1244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.