Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031820.1

Orthogroup ID

OG0001980

Physical Location & Seq

Genomic Coordinates Reverse (-)

2136 .. 2542

Gene Structure 407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031820.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgtcggcactggctgtacctgcacagcaggctggtgtagtcgctgaaggtgttggattgggggtttctggactcgggccgtcgaggagttcgaggattattgtgacaaggaggggtttgtcggtgcatgtggactcgctgttcacttcaggtgggtttattgaagaaatagatgtgttgaagcagagtgtggtggatgatgggctgagattgattgcaaacctgaatctgcggcggattgcggtgatagatgtcgggattgatggactgttgagcgttgcaaaggagtgtcagacactgcaggagttggaactgcattgctgtggggaccagggccggtcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Remorin_C

Protein Analysis

114

Amino Acids

11.92

Weight (kDa)

5.23

Isoelectric Point (pI)

63.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51370 AT5G51370 AT5G51380
fragaria_vesca	FvH4_7g10820 FvH4_7g27300 FvH4_7g27300 FvH4_7g27300
malus_domestica	MD01G1182100.v1.1 MD02G1213700.v1.1 MD07G1113100.v1.1 MD07G1252400.v1.1 MD11G1194200.v1.1
prunus_persica	Prupe.2G136200_v2.0.a1 Prupe.2G136200_v2.0.a1 Prupe.2G275900_v2.0.a1
pyrus_communis	pycom01g19190 pycom07g09790 pycom07g22480 pycom11g20120
rosa_chinensis	RchiOBHm_Chr1g0348741 RchiOBHm_Chr1g0374141 RchiOBHm_Chr6g0287661
rosa_laevigata	RLG00000012476 RLG00000026759 RLG00000028626
rosa_multiflora	Rmu_co7963096.1_g000001 Rmu_sc0001813.1_g000001 Rmu_sc0006564.1_g000008 Rmu_sc0031820.1_g000001 Rmu_ssc0000007.1_g000044 Rmu_ssc0000450.1_g000002
rosa_roxburghii	Rroxscaffold_4G00283690 Rroxscaffold_4G00306650
rosa_rugosa	Rorug01G0197700 Rorug01G0381000
rosa_samantha	Rh1AG214600 Rh1AG392000 Rh1BG181200 Rh1BG356000 Rh1CG199300 Rh1CG368900 Rh1DG211300 Rh6CG302900
rosa_wichuraiana	Rw1G018210 Rw1G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	28
AciI	CCGC	3 cut(s)	232, 235, 242
AcuI	CTGAAG	2 cut(s)	66, 132
AfaI	GTAC	1 cut(s)	18
AgsI	TTSAA	2 cut(s)	164, 181
AjnI	CCWGG	1 cut(s)	330
AloI	GAACNNNNNNTCC	2 cut(s)	125, 157
AlwNI	CAGNNNCTG	1 cut(s)	298
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	2 cut(s)	77, 334
AspS9I	GGNCC	4 cut(s)	77, 328, 334, 339
AsuHPI	GGTGA	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	2 cut(s)	328, 339
BccI	CCATC	2 cut(s)	194, 257
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	332
BfmI	CTRYAG	1 cut(s)	299
BfuAI	ACCTGC	1 cut(s)	28
BisI	GCNGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	234
Bme1390I	CCNGG	1 cut(s)	332
Bme18I	GGWCC	2 cut(s)	328, 339
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	4 cut(s)	77, 328, 334, 339
BmiI	GGNNCC	1 cut(s)	329
BmrFI	CCNGG	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	331
Bse118I	RCCGGY	1 cut(s)	336
Bse1I	ACTGG	1 cut(s)	15
Bse3DI	GCAATG	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	1 cut(s)	202
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	100
BsgI	GTGCAG	1 cut(s)	6
BshFI	GGCC	2 cut(s)	79, 336
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	337
BslFI	GGGAC	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	2 cut(s)	79, 336
BsoBI	CYCGRG	1 cut(s)	74
BspACI	CCGC	3 cut(s)	232, 235, 242
BspANI	GGCC	2 cut(s)	79, 336
BspCNI	CTCAG	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	329
BspMAI	CTGCAG	1 cut(s)	303
BspMI	ACCTGC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	15
BssAI	RCCGGY	1 cut(s)	336
BssECI	CCNNGG	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 29
BstNI	CCWGG	1 cut(s)	332
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	299
BsuRI	GGCC	2 cut(s)	79, 336
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	296
BtsIMutI	CAGTG	2 cut(s)	8, 296
BveI	ACCTGC	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	30
CaiI	CAGNNNCTG	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	336
Cfr13I	GGNCC	4 cut(s)	77, 328, 334, 339
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	5 cut(s)	14, 32, 79, 205, 336
CviKI_1	RGCY	5 cut(s)	14, 32, 79, 205, 336
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	1 cut(s)	206
EciI	GGCGGA	1 cut(s)	250
Eco47I	GGWCC	2 cut(s)	328, 339
Eco57I	CTGAAG	2 cut(s)	66, 132
Eco88I	CYCGRG	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	330
FaeI	CATG	1 cut(s)	131
FaiI	YATR	1 cut(s)	129
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	233
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	233
GluI	GCNGC	1 cut(s)	233
HaeIII	GGCC	2 cut(s)	79, 336
HapII	CCGG	1 cut(s)	337
Hin1II	CATG	1 cut(s)	131
HinfI	GANTC	3 cut(s)	72, 134, 226
HpaII	CCGG	1 cut(s)	337
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	2 cut(s)	133, 144
Hpy188I	TCNGA	1 cut(s)	294
Hpy188III	TCNNGA	3 cut(s)	69, 256, 342
Hpy8I	GTNNAC	2 cut(s)	133, 144
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	1 cut(s)	41
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4V	TGCA	6 cut(s)	23, 127, 218, 281, 301, 316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 29
HpyF3I	CTNAG	1 cut(s)	206
Hsp92II	CATG	1 cut(s)	131
LpnPI	CCDG	8 cut(s)	14, 18, 33, 54, 135, 236, 287, 317
MaeIII	GTNAC	1 cut(s)	103
MboII	GAAGA	1 cut(s)	176
MlyI	GAGTC	2 cut(s)	66, 128
MmeI	TCCRAC	2 cut(s)	34, 288
MnlI	CCTC	3 cut(s)	78, 87, 105
MslI	CAYNNNNRTG	1 cut(s)	321
MspI	CCGG	1 cut(s)	337
MspR9I	CCNGG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	2 cut(s)	20, 29
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	1 cut(s)	329
NmuCI	GTSAC	1 cut(s)	103
NspI	RCATGY	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	234
PleI	GAGTC	2 cut(s)	66, 128
PpsI	GAGTC	2 cut(s)	66, 128
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	329
PspPI	GGNCC	4 cut(s)	77, 328, 334, 339
PstI	CTGCAG	1 cut(s)	303
PstNI	CAGNNNCTG	1 cut(s)	298
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	321
SatI	GCNGC	1 cut(s)	233
Sau96I	GGNCC	4 cut(s)	77, 328, 334, 339
SchI	GAGTC	2 cut(s)	66, 128
ScrFI	CCNGG	1 cut(s)	332
SetI	ASST	4 cut(s)	22, 52, 154, 225
SfcI	CTRYAG	1 cut(s)	299
SinI	GGWCC	2 cut(s)	328, 339
SmiMI	CAYNNNNRTG	1 cut(s)	321
SsiI	CCGC	3 cut(s)	232, 235, 242
StyD4I	CCNGG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	270
TaqI	TCGA	2 cut(s)	83, 92
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	1 cut(s)	226
TscAI	CASTG	2 cut(s)	15, 303
TseFI	GTSAC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	103
TspRI	CASTG	2 cut(s)	15, 303
VpaK11BI	GGWCC	2 cut(s)	328, 339
XceI	RCATGY	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.