RLG00000012476

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001980
Physical Location & Seq
Reverse (-)
19141236 .. 19141992
757 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012476

Sequence Viewer

Length: 486 bp
ATGCATCTTCACAATGACTCTCGCTTTCCATCTTCCACTACACTCACTACTCCTCTCTCCGAGCCAGGCCTCTCCTCTTTCCGGGCCCTCACCCTAGACCCGACCCGACCCGACCTGATTCCACTGTTCTCGGATGAGCTCCTACTGTTGATCTTAGCCAAGCTCGCGGAATCGCCGCCAAGGAGTTTGAGGATTATTGTGACAAGGAAGGGTTTGTCGGTGCATGTGGACTTGTTGTTCACTTTGGGTGGGTTTATTGAAGAACTGGATGTGTTGAAGCAGAGTGTGGTGGATGATGGGCTGAGATTGATTGCAAACCCGAATCTACGGCGGATTGAGGTGATAGGTGCAGGGATTGATGGGCTGTTGAGCGTTGCAGAGGAGTGTCAGACGCTTGCGCAGATTTTGGATATTGGGTTGACGATTTTGGCTCAGGGGTGCAGGAGGTTGGTGAAGCTTGAGCTTTGTGGGTGTGAAGGGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like Remorin_C

Protein Analysis

162

Amino Acids

17.49

Weight (kDa)

5.15

Isoelectric Point (pI)

57.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 399
AccII CGCG 1 cut(s) 167
AciI CCGC 3 cut(s) 167, 176, 331
AfiI CCNNNNNNNGG 1 cut(s) 81
AgsI TTSAA 2 cut(s) 260, 277
AjnI CCWGG 1 cut(s) 64
AloI GAACNNNNNNTCC 2 cut(s) 221, 253
AluBI AGCT 5 cut(s) 139, 163, 457, 463, 483
AluI AGCT 5 cut(s) 139, 163, 457, 463, 483
Alw21I GWGCWC 1 cut(s) 141
AoxI GGCC 2 cut(s) 67, 84
ApaI GGGCCC 1 cut(s) 88
AspLEI GCGC 1 cut(s) 400
AspS9I GGNCC 2 cut(s) 84, 85
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 3 cut(s) 82, 352, 463
BaeGI GKGCMC 1 cut(s) 88
BanII GRGCYC 2 cut(s) 88, 141
Bbv12I GWGCWC 1 cut(s) 141
BccI CCATC 3 cut(s) 37, 290, 353
BceAI ACGGC 1 cut(s) 344
BciT130I CCWGG 1 cut(s) 66
BcnI CCSGG 1 cut(s) 83
BfaI CTAG 2 cut(s) 95, 484
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
Bme1390I CCNGG 2 cut(s) 66, 83
BmgT120I GGNCC 2 cut(s) 84, 85
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 2 cut(s) 66, 83
BmsI GCATC 1 cut(s) 13
Bpu10I CCTNAGC 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 479
BpuMI CCSGG 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 179
BseGI GGATG 3 cut(s) 139, 274, 298
BseLI CCNNNNNNNGG 1 cut(s) 81
BseMII CTCAG 2 cut(s) 293, 446
BseNI ACTGG 1 cut(s) 270
BseRI GAGGAG 3 cut(s) 42, 64, 395
BseSI GKGCMC 1 cut(s) 88
BsgI GTGCAG 2 cut(s) 369, 460
Bsh1236I CGCG 1 cut(s) 167
BshFI GGCC 2 cut(s) 69, 86
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 81
BsnI GGCC 2 cut(s) 69, 86
Bsp120I GGGCCC 1 cut(s) 84
Bsp1286I GDGCHC 2 cut(s) 88, 141
Bsp143I GATC 1 cut(s) 150
BspACI CCGC 3 cut(s) 167, 176, 331
BspANI GGCC 2 cut(s) 69, 86
BspCNI CTCAG 2 cut(s) 294, 445
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 86
BsrI ACTGG 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 2 cut(s) 126, 147
BstC8I GCNNGC 2 cut(s) 165, 396
BstDEI CTNAG 3 cut(s) 154, 302, 432
BstF5I GGATG 3 cut(s) 139, 274, 298
BstFNI CGCG 1 cut(s) 167
BstHHI GCGC 1 cut(s) 400
BstKTI GATC 1 cut(s) 153
BstMBI GATC 1 cut(s) 150
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 66
BstNSI RCATGY 1 cut(s) 227
BstSCI CCNGG 2 cut(s) 64, 81
BstSLI GKGCMC 1 cut(s) 88
BstUI CGCG 1 cut(s) 167
BsuRI GGCC 2 cut(s) 69, 86
BtsCI GGATG 3 cut(s) 139, 274, 298
BtsIMutI CAGTG 1 cut(s) 122
Cac8I GCNNGC 2 cut(s) 165, 396
CfoI GCGC 1 cut(s) 400
Cfr13I GGNCC 2 cut(s) 84, 85
CseI GACGC 1 cut(s) 400
CviAII CATG 1 cut(s) 224
DdeI CTNAG 3 cut(s) 154, 302, 432
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
EciI GGCGGA 1 cut(s) 346
Ecl136II GAGCTC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 179
Eco147I AGGCCT 1 cut(s) 69
Eco24I GRGCYC 2 cut(s) 88, 141
Eco53kI GAGCTC 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 179
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 88, 141
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 1 cut(s) 227
FaiI YATR 1 cut(s) 225
FatI CATG 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 3 cut(s) 146, 281, 305
FriOI GRGCYC 2 cut(s) 88, 141
Fsp4HI GCNGC 1 cut(s) 176
FspBI CTAG 2 cut(s) 95, 484
FspI TGCGCA 1 cut(s) 399
GlaI GCGC 1 cut(s) 399
GluI GCNGC 1 cut(s) 176
HaeIII GGCC 2 cut(s) 69, 86
HapII CCGG 1 cut(s) 82
HgaI GACGC 1 cut(s) 400
HhaI GCGC 1 cut(s) 400
Hin1II CATG 1 cut(s) 227
Hin6I GCGC 1 cut(s) 398
HinP1I GCGC 1 cut(s) 398
HincII GTYRAC 1 cut(s) 420
HindII GTYRAC 1 cut(s) 420
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 4 cut(s) 17, 118, 170, 322
HpaII CCGG 1 cut(s) 82
HphI GGTGA 3 cut(s) 82, 352, 463
Hpy166II GTNNAC 3 cut(s) 229, 240, 420
Hpy188I TCNGA 3 cut(s) 61, 133, 390
Hpy8I GTNNAC 3 cut(s) 229, 240, 420
HpyAV CCTTC 2 cut(s) 202, 470
HpyCH4III ACNGT 2 cut(s) 126, 147
HpyCH4V TGCA 6 cut(s) 4, 223, 314, 350, 377, 441
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 3 cut(s) 154, 302, 432
Hsp92II CATG 1 cut(s) 227
HspAI GCGC 1 cut(s) 398
Kzo9I GATC 1 cut(s) 150
LmnI GCTCC 2 cut(s) 144, 480
LpnPI CCDG 8 cut(s) 51, 78, 95, 128, 251, 336, 419, 427
LweI GCATC 1 cut(s) 13
MaeI CTAG 2 cut(s) 95, 484
MaeIII GTNAC 1 cut(s) 199
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MboII GAAGA 2 cut(s) 24, 272
MhlI GDGCHC 2 cut(s) 88, 141
MlyI GAGTC 1 cut(s) 11
MnlI CCTC 8 cut(s) 63, 80, 85, 98, 183, 331, 373, 438
Mph1103I ATGCAT 1 cut(s) 6
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 2 cut(s) 66, 83
MvaI CCWGG 1 cut(s) 66
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 164
NciI CCSGG 1 cut(s) 83
NdeII GATC 1 cut(s) 150
NlaIII CATG 1 cut(s) 227
NlaIV GGNNCC 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 199
NsbI TGCGCA 1 cut(s) 399
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 227
PceI AGGCCT 1 cut(s) 69
PfeI GAWTC 3 cut(s) 118, 170, 322
PkrI GCNGC 1 cut(s) 177
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
Psp124BI GAGCTC 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 86
PspOMI GGGCCC 1 cut(s) 84
PspPI GGNCC 2 cut(s) 84, 85
SacI GAGCTC 1 cut(s) 141
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 1 cut(s) 150
Sau96I GGNCC 2 cut(s) 84, 85
SchI GAGTC 1 cut(s) 11
ScrFI CCNGG 2 cut(s) 66, 83
SduI GDGCHC 2 cut(s) 88, 141
SetI ASST 9 cut(s) 117, 141, 165, 342, 349, 449, 459, 465, 485
SfaNI GCATC 1 cut(s) 13
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
SseBI AGGCCT 1 cut(s) 69
SsiI CCGC 3 cut(s) 167, 176, 331
SspMI CTAG 2 cut(s) 95, 484
SstI GAGCTC 1 cut(s) 141
StuI AGGCCT 1 cut(s) 69
StyD4I CCNGG 2 cut(s) 64, 81
StyI CCWWGG 1 cut(s) 179
TaaI ACNGT 2 cut(s) 126, 147
TauI GCSGC 1 cut(s) 178
TfiI GAWTC 3 cut(s) 118, 170, 322
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 199
TspRI CASTG 1 cut(s) 129
XceI RCATGY 1 cut(s) 227
XspI CTAG 2 cut(s) 95, 484
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.