Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001980

Physical Location & Seq

Genomic Coordinates Forward (+)

49334154 .. 49334510

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0381000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGGTCTGGAGAGAGCCGAACTCCTCGATCGATGTCTAGTTTGGATCGGGGAGGTTTCGGTAGCAGGGTGTGACGCGAGGAGAGGGGAGATCGAGGCTGATGTCGGGCTCTGGTGTGTCCCTCGATGGTCAGTCCGGCGACGTGACTTGGTGGCGCAGGTTCGAAGGTGGTGGGGTGGTGCCGTGGTTGTGCTGGCGCGGCTCGGATTTGATCAGATCAGTCTGATCTGGGTTAGGTCTTCTCGATCTGATCCAGGGATGGGTTTGTTTGGCAGAGATGGGGCGTTCCCATGGGTTAAGGATGGCAGATTGTTGCTAGGTGGGGCGGTGGTCATGGCGGCAGGGCTCGGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like Remorin_C

Protein Analysis

118

Amino Acids

12.95

Weight (kDa)

9.2

Isoelectric Point (pI)

56.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51370 AT5G51370 AT5G51380
fragaria_vesca	FvH4_7g10820 FvH4_7g27300 FvH4_7g27300 FvH4_7g27300
malus_domestica	MD01G1182100.v1.1 MD02G1213700.v1.1 MD07G1113100.v1.1 MD07G1252400.v1.1 MD11G1194200.v1.1
prunus_persica	Prupe.2G136200_v2.0.a1 Prupe.2G136200_v2.0.a1 Prupe.2G275900_v2.0.a1
pyrus_communis	pycom01g19190 pycom07g09790 pycom07g22480 pycom11g20120
rosa_chinensis	RchiOBHm_Chr1g0348741 RchiOBHm_Chr1g0374141 RchiOBHm_Chr6g0287661
rosa_laevigata	RLG00000012476 RLG00000026759 RLG00000028626
rosa_multiflora	Rmu_co7963096.1_g000001 Rmu_sc0001813.1_g000001 Rmu_sc0006564.1_g000008 Rmu_sc0031820.1_g000001 Rmu_ssc0000007.1_g000044 Rmu_ssc0000450.1_g000002
rosa_roxburghii	Rroxscaffold_4G00283690 Rroxscaffold_4G00306650
rosa_rugosa	Rorug01G0197700 Rorug01G0381000
rosa_samantha	Rh1AG214600 Rh1AG392000 Rh1BG181200 Rh1BG356000 Rh1CG199300 Rh1CG368900 Rh1DG211300 Rh6CG302900
rosa_wichuraiana	Rw1G018210 Rw1G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	148
AccB1I	GGYRCC	1 cut(s)	179
AccII	CGCG	2 cut(s)	77, 199
AciI	CCGC	3 cut(s)	199, 326, 338
AclWI	GGATC	2 cut(s)	53, 245
AfiI	CCNNNNNNNGG	1 cut(s)	260
AjiI	CACGTC	1 cut(s)	143
AjnI	CCWGG	1 cut(s)	253
AlwI	GGATC	2 cut(s)	53, 245
Ama87I	CYCGRG	1 cut(s)	347
AspLEI	GCGC	2 cut(s)	157, 199
AsuII	TTCGAA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	179
BanII	GRGCYC	2 cut(s)	111, 348
BbsI	GAAGAC	1 cut(s)	231
BccI	CCATC	4 cut(s)	120, 253, 272, 296
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	255
BclI	TGATCA	1 cut(s)	211
BfaI	CTAG	2 cut(s)	38, 317
BfuAI	ACCTGC	1 cut(s)	148
BisI	GCNGC	2 cut(s)	200, 339
BlsI	GCNGC	2 cut(s)	201, 340
Bme1390I	CCNGG	1 cut(s)	255
BmeT110I	CYCGRG	1 cut(s)	347
BmgBI	CACGTC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	231
BplI	GAGNNNNNCTC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	163
Bsa29I	ATCGAT	1 cut(s)	31
BsaJI	CCNNGG	3 cut(s)	183, 254, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	255
BseCI	ATCGAT	1 cut(s)	31
BseDI	CCNNGG	3 cut(s)	183, 254, 290
BseGI	GGATG	2 cut(s)	264, 307
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseRI	GAGGAG	2 cut(s)	14, 94
Bsh1236I	CGCG	2 cut(s)	77, 199
Bsh1285I	CGRYCG	1 cut(s)	31
BshNI	GGYRCC	1 cut(s)	179
BshVI	ATCGAT	1 cut(s)	31
BsiEI	CGRYCG	1 cut(s)	31
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	347
Bsp119I	TTCGAA	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	111, 348
Bsp143I	GATC	8 cut(s)	28, 45, 90, 211, 216, 225, 245, 250
Bsp19I	CCATGG	1 cut(s)	290
BspACI	CCGC	3 cut(s)	199, 326, 338
BspDI	ATCGAT	1 cut(s)	31
BspFNI	CGCG	2 cut(s)	77, 199
BspLI	GGNNCC	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	148
BspPI	GGATC	2 cut(s)	53, 245
BspT104I	TTCGAA	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	179
BssECI	CCNNGG	3 cut(s)	183, 254, 290
BssMI	GATC	8 cut(s)	28, 45, 90, 211, 216, 225, 245, 250
BssT1I	CCWWGG	1 cut(s)	290
Bst2UI	CCWGG	1 cut(s)	255
BstBI	TTCGAA	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	195
BstDSI	CCRYGG	2 cut(s)	183, 290
BstF5I	GGATG	2 cut(s)	264, 307
BstFNI	CGCG	2 cut(s)	77, 199
BstHHI	GCGC	2 cut(s)	157, 199
BstKTI	GATC	8 cut(s)	31, 48, 93, 214, 219, 228, 248, 253
BstMBI	GATC	8 cut(s)	28, 45, 90, 211, 216, 225, 245, 250
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstUI	CGCG	2 cut(s)	77, 199
BstV2I	GAAGAC	1 cut(s)	231
Bsu15I	ATCGAT	1 cut(s)	31
BsuTUI	ATCGAT	1 cut(s)	31
BtgI	CCRYGG	2 cut(s)	183, 290
BtrI	CACGTC	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	264, 307
BveI	ACCTGC	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	195
CfoI	GCGC	2 cut(s)	157, 199
ClaI	ATCGAT	1 cut(s)	31
CseI	GACGC	1 cut(s)	83
CviAII	CATG	2 cut(s)	291, 334
CviJI	RGCY	5 cut(s)	17, 98, 109, 202, 346
CviKI_1	RGCY	5 cut(s)	17, 98, 109, 202, 346
DpnI	GATC	8 cut(s)	30, 47, 92, 213, 218, 227, 247, 252
DpnII	GATC	8 cut(s)	28, 45, 90, 211, 216, 225, 245, 250
Eco130I	CCWWGG	1 cut(s)	290
Eco24I	GRGCYC	2 cut(s)	111, 348
Eco88I	CYCGRG	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	290
EcoT38I	GRGCYC	2 cut(s)	111, 348
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	2 cut(s)	294, 337
FaiI	YATR	2 cut(s)	292, 335
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	2 cut(s)	290, 333
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	200, 339
FokI	GGATG	2 cut(s)	271, 314
FriOI	GRGCYC	2 cut(s)	111, 348
Fsp4HI	GCNGC	2 cut(s)	200, 339
FspBI	CTAG	2 cut(s)	38, 317
GlaI	GCGC	2 cut(s)	156, 198
GluI	GCNGC	2 cut(s)	200, 339
GsuI	CTGGAG	1 cut(s)	29
HapII	CCGG	1 cut(s)	136
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	2 cut(s)	157, 199
Hin1II	CATG	2 cut(s)	294, 337
Hin6I	GCGC	2 cut(s)	155, 197
HinP1I	GCGC	2 cut(s)	155, 197
HpaII	CCGG	1 cut(s)	136
Hpy188I	TCNGA	5 cut(s)	206, 216, 225, 250, 356
Hpy188III	TCNNGA	2 cut(s)	8, 243
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	1 cut(s)	159
HpyCH4IV	ACGT	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpySE526I	ACGT	1 cut(s)	142
Hsp92II	CATG	2 cut(s)	294, 337
HspAI	GCGC	2 cut(s)	155, 197
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	8 cut(s)	28, 45, 90, 211, 216, 225, 245, 250
LpnPI	CCDG	9 cut(s)	51, 97, 143, 149, 179, 214, 240, 267, 327
MaeI	CTAG	2 cut(s)	38, 317
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	2 cut(s)	71, 143
MalI	GATC	8 cut(s)	30, 47, 92, 213, 218, 227, 247, 252
MboI	GATC	8 cut(s)	28, 45, 90, 211, 216, 225, 245, 250
MboII	GAAGA	1 cut(s)	231
MhlI	GDGCHC	2 cut(s)	111, 348
MnlI	CCTC	6 cut(s)	35, 46, 72, 77, 88, 132
MseI	TTAA	1 cut(s)	297
MspI	CCGG	1 cut(s)	136
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MvnI	CGCG	2 cut(s)	77, 199
MwoI	GCNNNNNNNGC	1 cut(s)	199
NcoI	CCATGG	1 cut(s)	290
NdeII	GATC	8 cut(s)	28, 45, 90, 211, 216, 225, 245, 250
NlaIII	CATG	2 cut(s)	294, 337
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	2 cut(s)	71, 143
NspV	TTCGAA	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	201, 340
Ple19I	CGATCG	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	181
PvuI	CGATCG	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	2 cut(s)	200, 339
Sau3AI	GATC	8 cut(s)	28, 45, 90, 211, 216, 225, 245, 250
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	2 cut(s)	111, 348
SetI	ASST	6 cut(s)	57, 145, 162, 170, 239, 322
SfuI	TTCGAA	1 cut(s)	163
SsiI	CCGC	3 cut(s)	199, 326, 338
SspMI	CTAG	2 cut(s)	38, 317
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	290
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	6 cut(s)	27, 31, 93, 124, 163, 244
TauI	GCSGC	2 cut(s)	202, 341
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseFI	GTSAC	2 cut(s)	71, 143
Tsp45I	GTSAC	2 cut(s)	71, 143
XspI	CTAG	2 cut(s)	38, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.