Rh1DG211300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001980
Physical Location & Seq
Reverse (-)
41050868 .. 41056352
5485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG211300.1

Sequence Viewer

Length: 1302 bp
ATGTCCTCCTACTCCCCAAAGTCACCGTCTTTGAAGAAGAAGAAGAGGCCAAGAACTCATAGCCTCCCAGACCAAGTTCTCAAGCATGTTATCTTCAAGATGCATCTTCACAACGACTCTCCTCCTTCTTCCACTGCCCCCACTACTCCTCTCTCCGAGCCGGACCTCTCCGCTTTCCGGGCCCTCACCCTAGACCCGACCCGACCCGATTTCACCTCCCTGCTCTCGGACGAGCTCCTGCTCTTGATCTTCGCCAAGCTCCCGGAGTCGCAGTACCTCCTCAACTCCCTCGTCTGCCGGCGGTGGCTGTACCTGCACGGGAGGCTGGTGCGGTCGCTGAAGGTGCTGGAATGGGGGTTCCTGGACTCGGGTCGGGTCTTCGCCCGGTTCCCGAATCTGGCCGAGGTGGACATTGTTCATTCCTGCATTAGGTCGCCGAGGAGTTCGGGGATTATCGTGACGAGGAGGGGTTTGTCGGTGCATGTGGACTCGCTGTTCAGTTCGGGCGGTGGATTTATTGAAGAAATGGATGTGTTGAAGCAGAGCGTGGTGGATGATGGGCTGAGACTGATTGCGAATTCGTACCCGAATCTGCGGCGGATTGCGGTGATCGGTGCCGGGGTTGATGGGCTGTTGAGTGTTGCGGAGGAGTGTCAGACGCTGCAGGAGCTGGAGCTGCATTGCTGTGGGGACTTGGTGCTGAAGGGGATTAGTGCGTTTAGGAACTTGCAGATTGTCAAGTTGATTGGGTGCGTGGATGGGTTTTACAGCGCGCAGATTTCGGATATTGGGTTGACGATTTTGGCTCAGGGGTGCAGGAGGTTGGTGAAACTTGAGCTTTGTGGGTGTGAAGGGAGCTATGATGGGATTAAGGCGATTGGGCAGTGTTGCCAGATGCTTGAGGAGCTGACTCTCAATGATCATAGGATGGATGGTGGGTGGTTGGCGGCGTTGCAGTTTTGTGGGAATTTGAAGACTTTGAGGCTTGAGTCTTGCCAGAGTATTGATTCGAGCCCGGGACCGGCTGAGTACTTGGGGTCTTGTGGAACAATTGAGGAGTTGCATTTGCTGCGGTGTCAAGTGCGGGAGAAGGATGGTATGAAGGCATTGTTCTCTGTTTGTGAAGCTGTGAAGGAGCTTGCTCTGCAGGATTGTTGGGGTTTGGTGGATGAAGTATTTGGCTTTGCGAATATTTGTAGGTATGACTCTTTTTCGTATGCATTTGTCTCTGTTTGTTGTCTGCTCCAAAATGCACTCTTGTGTATATTAATAAGAAAAATGCACTCAAACGTATATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like Remorin_C

Protein Analysis

433

Amino Acids

47.95

Weight (kDa)

6.6

Isoelectric Point (pI)

56.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 321
AccB1I GGYRCC 1 cut(s) 614
AccII CGCG 1 cut(s) 773
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 2 cut(s) 577, 967
AcuI CTGAAG 2 cut(s) 359, 722
AfaI GTAC 4 cut(s) 275, 311, 584, 1031
AfiI CCNNNNNNNGG 6 cut(s) 177, 226, 367, 397, 429, 1021
AgsI TTSAA 5 cut(s) 34, 97, 521, 538, 973
AjnI CCWGG 1 cut(s) 360
AleI CACNNNNGTG 1 cut(s) 1258
AloI GAACNNNNNNTCC 4 cut(s) 341, 373, 479, 511
AluBI AGCT 9 cut(s) 235, 259, 670, 676, 838, 858, 907, 1127, 1138
AluI AGCT 9 cut(s) 235, 259, 670, 676, 838, 858, 907, 1127, 1138
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 2 cut(s) 559, 1231
AlwNI CAGNNNCTG 2 cut(s) 661, 670
Ama87I CYCGRG 2 cut(s) 367, 1015
AoxI GGCC 3 cut(s) 47, 180, 399
ApaI GGGCCC 1 cut(s) 184
ApeKI GCWGC 3 cut(s) 661, 676, 1069
ApoI RAATTY 2 cut(s) 577, 967
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
AseI ATTAAT 1 cut(s) 1268
AspLEI GCGC 2 cut(s) 773, 775
AspS9I GGNCC 4 cut(s) 163, 180, 181, 1019
AsuC2I CCSGG 6 cut(s) 179, 263, 385, 619, 1016, 1017
AsuHPI GGTGA 5 cut(s) 15, 178, 205, 619, 838
AvaI CYCGRG 2 cut(s) 367, 1015
AvaII GGWCC 2 cut(s) 163, 1019
BaeGI GKGCMC 1 cut(s) 184
BanI GGYRCC 1 cut(s) 614
BanII GRGCYC 3 cut(s) 184, 237, 1016
BbsI GAAGAC 2 cut(s) 370, 980
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 3 cut(s) 648, 663, 1056
BccI CCATC 7 cut(s) 551, 620, 752, 857, 922, 926, 1088
BciT130I CCWGG 1 cut(s) 362
BclI TGATCA 1 cut(s) 919
BcnI CCSGG 6 cut(s) 179, 263, 385, 619, 1016, 1017
BcoDI GTCTC 2 cut(s) 559, 1231
BfaI CTAG 1 cut(s) 191
BfmI CTRYAG 2 cut(s) 662, 1145
BfuAI ACCTGC 1 cut(s) 321
BisI GCNGC 5 cut(s) 596, 662, 677, 948, 1070
BlsI GCNGC 5 cut(s) 597, 663, 678, 949, 1071
BmcAI AGTACT 1 cut(s) 1031
Bme1390I CCNGG 7 cut(s) 179, 263, 362, 385, 619, 1016, 1017
Bme18I GGWCC 2 cut(s) 163, 1019
BmeT110I CYCGRG 2 cut(s) 367, 1015
BmgT120I GGNCC 4 cut(s) 163, 180, 181, 1019
BmiI GGNNCC 5 cut(s) 182, 359, 389, 616, 1020
BmrFI CCNGG 7 cut(s) 179, 263, 362, 385, 619, 1016, 1017
BmsI GCATC 3 cut(s) 90, 112, 885
BoxI GACNNNNGTC 1 cut(s) 369
BpiI GAAGAC 2 cut(s) 370, 980
BpmI CTGGAG 1 cut(s) 692
Bpu10I CCTNAGC 1 cut(s) 807
BpuEI CTTGAG 4 cut(s) 65, 854, 920, 1007
BpuMI CCSGG 6 cut(s) 179, 263, 385, 619, 1016, 1017
BsaJI CCNNGG 4 cut(s) 402, 437, 618, 1015
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 6 cut(s) 177, 226, 367, 397, 429, 1021
Bse118I RCCGGY 2 cut(s) 297, 1021
Bse3DI GCAATG 1 cut(s) 679
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 4 cut(s) 402, 437, 618, 1015
BseGI GGATG 7 cut(s) 535, 559, 763, 933, 937, 1099, 1174
BseLI CCNNNNNNNGG 6 cut(s) 177, 226, 367, 397, 429, 1021
BseMI GCAATG 1 cut(s) 679
BseMII CTCAG 3 cut(s) 554, 821, 1017
BsePI GCGCGC 1 cut(s) 771
BseRI GAGGAG 8 cut(s) 111, 138, 269, 454, 478, 662, 917, 1070
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 3 cut(s) 648, 663, 1056
BsgI GTGCAG 2 cut(s) 299, 835
Bsh1236I CGCG 1 cut(s) 773
Bsh1285I CGRYCG 1 cut(s) 335
BshFI GGCC 3 cut(s) 49, 182, 401
BshNI GGYRCC 1 cut(s) 614
BsiEI CGRYCG 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 237
BsiHKCI CYCGRG 2 cut(s) 367, 1015
BsiSI CCGG 8 cut(s) 161, 178, 263, 298, 385, 618, 1016, 1022
BslFI GGGAC 2 cut(s) 704, 1032
BslI CCNNNNNNNGG 6 cut(s) 177, 226, 367, 397, 429, 1021
BsmAI GTCTC 2 cut(s) 559, 1231
BsmFI GGGAC 2 cut(s) 704, 1032
BsnI GGCC 3 cut(s) 49, 182, 401
BsoBI CYCGRG 2 cut(s) 367, 1015
Bsp120I GGGCCC 1 cut(s) 180
Bsp1286I GDGCHC 3 cut(s) 184, 237, 1016
Bsp143I GATC 3 cut(s) 246, 609, 919
BspANI GGCC 3 cut(s) 49, 182, 401
BspCNI CTCAG 3 cut(s) 555, 820, 1018
BspFNI CGCG 1 cut(s) 773
BspLI GGNNCC 5 cut(s) 182, 359, 389, 616, 1020
BspMAI CTGCAG 2 cut(s) 666, 1149
BspMI ACCTGC 1 cut(s) 321
BspT107I GGYRCC 1 cut(s) 614
BsrDI GCAATG 1 cut(s) 679
BsrFI RCCGGY 2 cut(s) 297, 1021
BssAI RCCGGY 2 cut(s) 297, 1021
BssECI CCNNGG 4 cut(s) 402, 437, 618, 1015
BssHII GCGCGC 1 cut(s) 771
BssMI GATC 3 cut(s) 246, 609, 919
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 1 cut(s) 27
Bst6I CTCTTC 1 cut(s) 38
BstAPI GCANNNNNTGC 1 cut(s) 1069
BstC8I GCNNGC 3 cut(s) 299, 773, 1140
BstDEI CTNAG 3 cut(s) 563, 807, 1026
BstENI CCTNNNNNAGG 1 cut(s) 427
BstF5I GGATG 7 cut(s) 535, 559, 763, 933, 937, 1099, 1174
BstFNI CGCG 1 cut(s) 773
BstHHI GCGC 2 cut(s) 773, 775
BstKTI GATC 3 cut(s) 249, 612, 922
BstMAI GTCTC 2 cut(s) 559, 1231
BstMBI GATC 3 cut(s) 246, 609, 919
BstMCI CGRYCG 1 cut(s) 335
BstMWI GCNNNNNNNGC 9 cut(s) 179, 313, 322, 343, 667, 676, 904, 1069, 1144
BstNI CCWGG 1 cut(s) 362
BstNSI RCATGY 2 cut(s) 89, 485
BstPAI GACNNNNGTC 1 cut(s) 369
BstSCI CCNGG 7 cut(s) 177, 261, 360, 383, 617, 1014, 1015
BstSFI CTRYAG 2 cut(s) 662, 1145
BstSLI GKGCMC 1 cut(s) 184
BstUI CGCG 1 cut(s) 773
BstV1I GCAGC 3 cut(s) 648, 663, 1056
BstV2I GAAGAC 2 cut(s) 370, 980
BsuRI GGCC 3 cut(s) 49, 182, 401
BtsCI GGATG 7 cut(s) 535, 559, 763, 933, 937, 1099, 1174
BtsI GCAGTG 2 cut(s) 132, 890
BtsIMutI CAGTG 2 cut(s) 132, 890
BveI ACCTGC 1 cut(s) 321
Cac8I GCNNGC 3 cut(s) 299, 773, 1140
CaiI CAGNNNCTG 2 cut(s) 661, 670
CfoI GCGC 2 cut(s) 773, 775
Cfr10I RCCGGY 2 cut(s) 297, 1021
Cfr13I GGNCC 4 cut(s) 163, 180, 181, 1019
Cfr9I CCCGGG 1 cut(s) 1015
CseI GACGC 1 cut(s) 667
Csp6I GTAC 4 cut(s) 274, 310, 583, 1030
CviAII CATG 2 cut(s) 86, 482
CviQI GTAC 4 cut(s) 274, 310, 583, 1030
DdeI CTNAG 3 cut(s) 563, 807, 1026
DpnI GATC 3 cut(s) 248, 611, 921
DpnII GATC 3 cut(s) 246, 609, 919
EaeI YGGCCR 1 cut(s) 399
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 1 cut(s) 613
Ecl136II GAGCTC 1 cut(s) 235
Eco24I GRGCYC 3 cut(s) 184, 237, 1016
Eco47I GGWCC 2 cut(s) 163, 1019
Eco53kI GAGCTC 1 cut(s) 235
Eco57I CTGAAG 2 cut(s) 359, 722
Eco88I CYCGRG 2 cut(s) 367, 1015
EcoICRI GAGCTC 1 cut(s) 235
EcoNI CCTNNNNNAGG 1 cut(s) 427
EcoO109I RGGNCCY 1 cut(s) 181
EcoRI GAATTC 1 cut(s) 577
EcoRII CCWGG 1 cut(s) 360
EcoT22I ATGCAT 2 cut(s) 105, 1222
EcoT38I GRGCYC 3 cut(s) 184, 237, 1016
FaeI CATG 2 cut(s) 89, 485
FaqI GGGAC 2 cut(s) 704, 1032
FatI CATG 2 cut(s) 85, 481
FauI CCCGC 1 cut(s) 1077
FbaI TGATCA 1 cut(s) 919
Fnu4HI GCNGC 5 cut(s) 596, 662, 677, 948, 1070
FokI GGATG 7 cut(s) 542, 566, 770, 940, 944, 1106, 1181
FriOI GRGCYC 3 cut(s) 184, 237, 1016
Fsp4HI GCNGC 5 cut(s) 596, 662, 677, 948, 1070
FspBI CTAG 1 cut(s) 191
GlaI GCGC 2 cut(s) 772, 774
GluI GCNGC 5 cut(s) 596, 662, 677, 948, 1070
GsuI CTGGAG 1 cut(s) 692
HaeIII GGCC 3 cut(s) 49, 182, 401
HapII CCGG 8 cut(s) 161, 178, 263, 298, 385, 618, 1016, 1022
HgaI GACGC 1 cut(s) 667
HhaI GCGC 2 cut(s) 773, 775
Hin1II CATG 2 cut(s) 89, 485
Hin6I GCGC 2 cut(s) 771, 773
HinP1I GCGC 2 cut(s) 771, 773
HincII GTYRAC 1 cut(s) 795
HindII GTYRAC 1 cut(s) 795
HpaII CCGG 8 cut(s) 161, 178, 263, 298, 385, 618, 1016, 1022
HphI GGTGA 5 cut(s) 15, 178, 205, 619, 838
Hpy166II GTNNAC 3 cut(s) 409, 487, 795
Hpy188I TCNGA 4 cut(s) 157, 229, 657, 784
Hpy188III TCNNGA 4 cut(s) 97, 244, 391, 457
Hpy8I GTNNAC 3 cut(s) 409, 487, 795
HpyAV CCTTC 7 cut(s) 135, 334, 697, 845, 1084, 1096, 1126
HpyCH4III ACNGT 1 cut(s) 27
HpyCH4IV ACGT 1 cut(s) 1290
HpyF10VI GCNNNNNNNGC 9 cut(s) 179, 313, 322, 343, 667, 676, 904, 1069, 1144
HpyF3I CTNAG 3 cut(s) 563, 807, 1026
HpySE526I ACGT 1 cut(s) 1290
Hsp92II CATG 2 cut(s) 89, 485
HspAI GCGC 2 cut(s) 771, 773
KroI GCCGGC 1 cut(s) 297
KroNI GCCGGC 1 cut(s) 299
Ksp22I TGATCA 1 cut(s) 919
Kzo9I GATC 3 cut(s) 246, 609, 919
LmnI GCTCC 8 cut(s) 240, 264, 667, 673, 855, 904, 1135, 1248
Lsp1109I GCAGC 3 cut(s) 648, 663, 1056
LweI GCATC 3 cut(s) 90, 112, 885
MaeI CTAG 1 cut(s) 191
MaeII ACGT 1 cut(s) 1290
MaeIII GTNAC 2 cut(s) 21, 457
MalI GATC 3 cut(s) 248, 611, 921
MboI GATC 3 cut(s) 246, 609, 919
MfeI CAATTG 1 cut(s) 1050
MhlI GDGCHC 3 cut(s) 184, 237, 1016
MluCI AATT 3 cut(s) 577, 967, 1050
MlyI GAGTC 7 cut(s) 110, 275, 359, 482, 904, 998, 1199
Mph1103I ATGCAT 2 cut(s) 105, 1222
MroNI GCCGGC 1 cut(s) 297
MseI TTAA 2 cut(s) 870, 1268
MslI CAYNNNNRTG 2 cut(s) 684, 1258
MspI CCGG 8 cut(s) 161, 178, 263, 298, 385, 618, 1016, 1022
MspR9I CCNGG 7 cut(s) 179, 263, 362, 385, 619, 1016, 1017
MunI CAATTG 1 cut(s) 1050
MvaI CCWGG 1 cut(s) 362
MvnI CGCG 1 cut(s) 773
MwoI GCNNNNNNNGC 9 cut(s) 179, 313, 322, 343, 667, 676, 904, 1069, 1144
NaeI GCCGGC 1 cut(s) 299
NciI CCSGG 6 cut(s) 179, 263, 385, 619, 1016, 1017
NdeII GATC 3 cut(s) 246, 609, 919
NgoMIV GCCGGC 1 cut(s) 297
NlaIII CATG 2 cut(s) 89, 485
NlaIV GGNNCC 5 cut(s) 182, 359, 389, 616, 1020
NmeAIII GCCGAG 2 cut(s) 427, 462
NmuCI GTSAC 2 cut(s) 21, 457
NsiI ATGCAT 2 cut(s) 105, 1222
NspI RCATGY 2 cut(s) 89, 485
OliI CACNNNNGTG 1 cut(s) 1258
PauI GCGCGC 1 cut(s) 771
PdiI GCCGGC 1 cut(s) 299
PfeI GAWTC 3 cut(s) 394, 589, 1007
PfoI TCCNGGA 2 cut(s) 261, 360
PkrI GCNGC 5 cut(s) 597, 663, 678, 949, 1071
PleI GAGTC 7 cut(s) 110, 274, 359, 482, 904, 997, 1199
PpsI GAGTC 7 cut(s) 110, 274, 359, 482, 904, 997, 1199
PshAI GACNNNNGTC 1 cut(s) 369
PshBI ATTAAT 1 cut(s) 1268
Psp124BI GAGCTC 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 5 cut(s) 182, 359, 389, 616, 1020
PspOMI GGGCCC 1 cut(s) 180
PspPI GGNCC 4 cut(s) 163, 180, 181, 1019
PstI CTGCAG 2 cut(s) 666, 1149
PstNI CAGNNNCTG 2 cut(s) 661, 670
PteI GCGCGC 1 cut(s) 771
RsaI GTAC 4 cut(s) 275, 311, 584, 1031
RsaNI GTAC 4 cut(s) 274, 310, 583, 1030
RseI CAYNNNNRTG 2 cut(s) 684, 1258
SacI GAGCTC 1 cut(s) 237
SaqAI TTAA 2 cut(s) 870, 1268
SatI GCNGC 5 cut(s) 596, 662, 677, 948, 1070
Sau3AI GATC 3 cut(s) 246, 609, 919
Sau96I GGNCC 4 cut(s) 163, 180, 181, 1019
ScaI AGTACT 1 cut(s) 1031
SchI GAGTC 7 cut(s) 110, 275, 359, 482, 904, 998, 1199
ScrFI CCNGG 7 cut(s) 179, 263, 362, 385, 619, 1016, 1017
SduI GDGCHC 3 cut(s) 184, 237, 1016
SfaNI GCATC 3 cut(s) 90, 112, 885
SfcI CTRYAG 2 cut(s) 662, 1145
SinI GGWCC 2 cut(s) 163, 1019
SmaI CCCGGG 1 cut(s) 1017
SmiMI CAYNNNNRTG 2 cut(s) 684, 1258
SmlI CTYRAG 4 cut(s) 80, 833, 899, 986
SmoI CTYRAG 4 cut(s) 80, 833, 899, 986
Sse9I AATT 3 cut(s) 577, 967, 1050
SspI AATATT 1 cut(s) 1192
SspMI CTAG 1 cut(s) 191
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 7 cut(s) 177, 261, 360, 383, 617, 1014, 1015
TaaI ACNGT 1 cut(s) 27
TaiI ACGT 1 cut(s) 1293
TaqI TCGA 1 cut(s) 1010
TasI AATT 3 cut(s) 577, 967, 1050
TatI WGTACW 1 cut(s) 1029
TauI GCSGC 2 cut(s) 598, 950
TfiI GAWTC 3 cut(s) 394, 589, 1007
Tru1I TTAA 2 cut(s) 870, 1268
Tru9I TTAA 2 cut(s) 870, 1268
TscAI CASTG 2 cut(s) 139, 890
TseFI GTSAC 2 cut(s) 21, 457
TseI GCWGC 3 cut(s) 661, 676, 1069
Tsp45I GTSAC 2 cut(s) 21, 457
TspDTI ATGAA 4 cut(s) 407, 1115, 1185, 1287
TspMI CCCGGG 1 cut(s) 1015
TspRI CASTG 2 cut(s) 139, 890
VpaK11BI GGWCC 2 cut(s) 163, 1019
VspI ATTAAT 1 cut(s) 1268
XagI CCTNNNNNAGG 1 cut(s) 427
XapI RAATTY 2 cut(s) 577, 967
XceI RCATGY 2 cut(s) 89, 485
XmaI CCCGGG 1 cut(s) 1015
XspI CTAG 1 cut(s) 191
ZrmI AGTACT 1 cut(s) 1031
Zsp2I ATGCAT 2 cut(s) 105, 1222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.