Rh1AG214600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001980
Physical Location & Seq
Reverse (-)
40990350 .. 40995506
5157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG214600.1

Sequence Viewer

Length: 1218 bp
ATGTCCTCCTACTCCCCAAAGTCACCATCTTTGAAGAAGAAGAAGAGGCCAAGAACTCATAGCCTCCCAGACCAAGTTCTCAAGCATGTTATCTTCAAGATGCATCTTCACAACGACCCCCCTCCTCCTTCCACTGCACCCACTACTCCTCTCTCCGCCGCTTTCCGGGCCCTCACCCTAGACCCGACCCGACCCGACTTCACCTCCCTGCTCTCGGACGAGCTCCTGCTCATGATCTTCGCCAAGCTCCCGGAGTCGCAGTACCTCCTCAACTCCCTCGTCTGCCGGCGGTGGCTGTACCTGCACGGGAGGCTGGTGCGGTCGCTGAGGGTGCTGGATTGGGGGTTTCTGGACTCGGGTCGGGTCTTCGCCCGGTTCCCGAATCTGGCTGAGGCGGACATTGTTCATTCCTGCATTAGGTCGCCGAGGAGTTCGGGGATTATCGTGACGAGGAGGGGTTTGTCGGTGCATGTGGACTCGCTGTTCAGTTCGGGCGGTGGGTTTATTGAAGAAATGGATGTGTTGAAGCAGAGTGTGGTGGACGATGGGCTGAGACTGATTGCGAATTCGTACCCGAATCTGCGGCGGATTGCGGTGATTGGTGCCGGGGTTGATGGGCTGTTGAGCGTTGCGGAGGAGTGTCAGACGCTGCAGGAGCTGGAGCTGCATTGCTGTGGGGACTTGGCGCTGAAGGGGATTAGTGGGTTTAGGAACTTGCAGATTGTGAAGTTGATTGGCTGCGTGGATGGGTTTTACAGCGCGCAGATTTCGGATATTGGGTTGACTATTTTGGCTCAGGGGTGCAGGAGGTTGGTGAAGCTTGAGCTTTGTGGGTGTGAAGGGAGCTATGATGGGATTAAGGCGATTGGGCAGTGTTGCCAGATGCTTGAGGAGCTGACTCTCAGTGATCATAGGATGGATGGAGGGTGGTTGGCGGCGTTGCAGTTTTGTGGGAATTTGAAGACTCTGAGGCTTGAGTCTTGCCAGAGTATTGATTTGAGCCCGGGACCGGATGAGTACTTGGGGTCTTGTGGAACAATTGAGGAGTTGCATTTGCTGCGGTGTCAAGTGCGAGATAAGGATGGTATGAAGGCATTGTTCTCTGTTTGTGAAGCTGTGAAAGAGCTTGCTCTGCAGGATTGTTGGGGTTTGGTGGATGAAGTATTTGGCTTTGCGAATATTTGTAGGCATTTTGTCCTTTGGGCTTTCATCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like Remorin_C

Protein Analysis

405

Amino Acids

44.87

Weight (kDa)

6.59

Isoelectric Point (pI)

52.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 309
AccB1I GGYRCC 1 cut(s) 602
AccII CGCG 1 cut(s) 761
AcsI RAATTY 2 cut(s) 565, 955
AcuI CTGAAG 1 cut(s) 710
AfaI GTAC 4 cut(s) 263, 299, 572, 1019
AfiI CCNNNNNNNGG 5 cut(s) 165, 214, 385, 417, 1009
AgsI TTSAA 5 cut(s) 34, 97, 509, 526, 961
AloI GAACNNNNNNTCC 2 cut(s) 467, 499
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 547
AlwNI CAGNNNCTG 2 cut(s) 649, 658
Ama87I CYCGRG 2 cut(s) 355, 1003
AoxI GGCC 2 cut(s) 47, 168
ApaI GGGCCC 1 cut(s) 172
ApeKI GCWGC 4 cut(s) 649, 664, 738, 1057
ApoI RAATTY 2 cut(s) 565, 955
AspLEI GCGC 3 cut(s) 688, 761, 763
AspS9I GGNCC 3 cut(s) 168, 169, 1007
AsuC2I CCSGG 6 cut(s) 167, 251, 373, 607, 1004, 1005
AsuHPI GGTGA 5 cut(s) 15, 166, 193, 607, 826
AvaI CYCGRG 2 cut(s) 355, 1003
AvaII GGWCC 1 cut(s) 1007
BaeGI GKGCMC 1 cut(s) 172
BanI GGYRCC 1 cut(s) 602
BanII GRGCYC 3 cut(s) 172, 225, 1004
BbsI GAAGAC 2 cut(s) 358, 968
Bbv12I GWGCWC 1 cut(s) 225
BbvCI CCTCAGC 2 cut(s) 326, 390
BbvI GCAGC 4 cut(s) 636, 651, 725, 1044
BccI CCATC 8 cut(s) 34, 539, 608, 740, 845, 910, 914, 1076
BclI TGATCA 1 cut(s) 907
BcnI CCSGG 6 cut(s) 167, 251, 373, 607, 1004, 1005
BcoDI GTCTC 1 cut(s) 547
BfaI CTAG 2 cut(s) 179, 1216
BfmI CTRYAG 2 cut(s) 650, 1133
BfoI RGCGCY 1 cut(s) 689
BfuAI ACCTGC 1 cut(s) 309
BisI GCNGC 7 cut(s) 159, 584, 650, 665, 739, 936, 1058
BlsI GCNGC 7 cut(s) 160, 585, 651, 666, 740, 937, 1059
BmcAI AGTACT 1 cut(s) 1019
Bme1390I CCNGG 6 cut(s) 167, 251, 373, 607, 1004, 1005
Bme18I GGWCC 1 cut(s) 1007
BmeT110I CYCGRG 2 cut(s) 355, 1003
BmgT120I GGNCC 3 cut(s) 168, 169, 1007
BmiI GGNNCC 4 cut(s) 170, 377, 604, 1008
BmrFI CCNGG 6 cut(s) 167, 251, 373, 607, 1004, 1005
BmsI GCATC 3 cut(s) 90, 112, 873
BoxI GACNNNNGTC 1 cut(s) 357
BpiI GAAGAC 2 cut(s) 358, 968
BpmI CTGGAG 1 cut(s) 680
Bpu10I CCTNAGC 3 cut(s) 326, 390, 795
BpuEI CTTGAG 4 cut(s) 65, 842, 908, 995
BpuMI CCSGG 6 cut(s) 167, 251, 373, 607, 1004, 1005
BsaJI CCNNGG 3 cut(s) 425, 606, 1003
BsaWI WCCGGW 1 cut(s) 1009
BsaXI ACNNNNNCTCC 4 cut(s) 188, 218, 245, 275
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 214, 385, 417, 1009
Bse118I RCCGGY 1 cut(s) 285
Bse3DI GCAATG 1 cut(s) 667
BseDI CCNNGG 3 cut(s) 425, 606, 1003
BseGI GGATG 7 cut(s) 523, 751, 921, 925, 1018, 1087, 1162
BseLI CCNNNNNNNGG 5 cut(s) 165, 214, 385, 417, 1009
BseMI GCAATG 1 cut(s) 667
BseMII CTCAG 6 cut(s) 317, 381, 542, 809, 916, 959
BsePI GCGCGC 1 cut(s) 759
BseRI GAGGAG 8 cut(s) 114, 138, 257, 442, 466, 650, 905, 1058
BseSI GKGCMC 1 cut(s) 172
BseXI GCAGC 4 cut(s) 636, 651, 725, 1044
BsgI GTGCAG 3 cut(s) 120, 287, 823
Bsh1236I CGCG 1 cut(s) 761
Bsh1285I CGRYCG 1 cut(s) 323
BshFI GGCC 2 cut(s) 49, 170
BshNI GGYRCC 1 cut(s) 602
BsiEI CGRYCG 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 225
BsiHKCI CYCGRG 2 cut(s) 355, 1003
BsiSI CCGG 7 cut(s) 166, 251, 286, 373, 606, 1004, 1010
BslFI GGGAC 2 cut(s) 692, 1020
BslI CCNNNNNNNGG 5 cut(s) 165, 214, 385, 417, 1009
BsmAI GTCTC 1 cut(s) 547
BsmFI GGGAC 2 cut(s) 692, 1020
BsnI GGCC 2 cut(s) 49, 170
BsoBI CYCGRG 2 cut(s) 355, 1003
Bsp120I GGGCCC 1 cut(s) 168
Bsp1286I GDGCHC 3 cut(s) 172, 225, 1004
Bsp143I GATC 2 cut(s) 234, 907
BspANI GGCC 2 cut(s) 49, 170
BspCNI CTCAG 6 cut(s) 318, 382, 543, 808, 915, 960
BspFNI CGCG 1 cut(s) 761
BspHI TCATGA 1 cut(s) 231
BspLI GGNNCC 4 cut(s) 170, 377, 604, 1008
BspMAI CTGCAG 2 cut(s) 654, 1137
BspMI ACCTGC 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 602
BsrDI GCAATG 1 cut(s) 667
BsrFI RCCGGY 1 cut(s) 285
BssAI RCCGGY 1 cut(s) 285
BssECI CCNNGG 3 cut(s) 425, 606, 1003
BssHII GCGCGC 1 cut(s) 759
BssMI GATC 2 cut(s) 234, 907
Bst6I CTCTTC 1 cut(s) 38
BstAPI GCANNNNNTGC 1 cut(s) 1057
BstC8I GCNNGC 3 cut(s) 287, 761, 1128
BstDEI CTNAG 6 cut(s) 326, 390, 551, 795, 902, 968
BstENI CCTNNNNNAGG 1 cut(s) 415
BstF5I GGATG 7 cut(s) 523, 751, 921, 925, 1018, 1087, 1162
BstFNI CGCG 1 cut(s) 761
BstH2I RGCGCY 1 cut(s) 689
BstHHI GCGC 3 cut(s) 688, 761, 763
BstKTI GATC 2 cut(s) 237, 910
BstMAI GTCTC 1 cut(s) 547
BstMBI GATC 2 cut(s) 234, 907
BstMCI CGRYCG 1 cut(s) 323
BstMWI GCNNNNNNNGC 9 cut(s) 167, 301, 310, 331, 655, 664, 892, 1057, 1132
BstNSI RCATGY 2 cut(s) 89, 473
BstPAI GACNNNNGTC 1 cut(s) 357
BstSCI CCNGG 6 cut(s) 165, 249, 371, 605, 1002, 1003
BstSFI CTRYAG 2 cut(s) 650, 1133
BstSLI GKGCMC 1 cut(s) 172
BstUI CGCG 1 cut(s) 761
BstV1I GCAGC 4 cut(s) 636, 651, 725, 1044
BstV2I GAAGAC 2 cut(s) 358, 968
BsuRI GGCC 2 cut(s) 49, 170
BtsCI GGATG 7 cut(s) 523, 751, 921, 925, 1018, 1087, 1162
BtsI GCAGTG 2 cut(s) 132, 878
BtsIMutI CAGTG 3 cut(s) 132, 878, 910
BveI ACCTGC 1 cut(s) 309
Cac8I GCNNGC 3 cut(s) 287, 761, 1128
CaiI CAGNNNCTG 2 cut(s) 649, 658
CciI TCATGA 1 cut(s) 231
CfoI GCGC 3 cut(s) 688, 761, 763
Cfr10I RCCGGY 1 cut(s) 285
Cfr13I GGNCC 3 cut(s) 168, 169, 1007
Cfr9I CCCGGG 1 cut(s) 1003
CseI GACGC 1 cut(s) 655
Csp6I GTAC 4 cut(s) 262, 298, 571, 1018
CviAII CATG 3 cut(s) 86, 232, 470
CviQI GTAC 4 cut(s) 262, 298, 571, 1018
DdeI CTNAG 6 cut(s) 326, 390, 551, 795, 902, 968
DpnI GATC 2 cut(s) 236, 909
DpnII GATC 2 cut(s) 234, 907
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 3 cut(s) 145, 410, 601
Ecl136II GAGCTC 1 cut(s) 223
Eco24I GRGCYC 3 cut(s) 172, 225, 1004
Eco47I GGWCC 1 cut(s) 1007
Eco53kI GAGCTC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 710
Eco88I CYCGRG 2 cut(s) 355, 1003
EcoICRI GAGCTC 1 cut(s) 223
EcoNI CCTNNNNNAGG 1 cut(s) 415
EcoO109I RGGNCCY 1 cut(s) 169
EcoRI GAATTC 1 cut(s) 565
EcoT22I ATGCAT 1 cut(s) 105
EcoT38I GRGCYC 3 cut(s) 172, 225, 1004
FaeI CATG 3 cut(s) 89, 235, 473
FaiI YATR 7 cut(s) 60, 87, 233, 471, 849, 912, 1088
FaqI GGGAC 2 cut(s) 692, 1020
FatI CATG 3 cut(s) 85, 231, 469
FbaI TGATCA 1 cut(s) 907
Fnu4HI GCNGC 7 cut(s) 159, 584, 650, 665, 739, 936, 1058
FokI GGATG 7 cut(s) 530, 758, 928, 932, 1025, 1094, 1169
FriOI GRGCYC 3 cut(s) 172, 225, 1004
Fsp4HI GCNGC 7 cut(s) 159, 584, 650, 665, 739, 936, 1058
FspBI CTAG 2 cut(s) 179, 1216
GlaI GCGC 3 cut(s) 687, 760, 762
GluI GCNGC 7 cut(s) 159, 584, 650, 665, 739, 936, 1058
GsuI CTGGAG 1 cut(s) 680
HaeII RGCGCY 1 cut(s) 689
HaeIII GGCC 2 cut(s) 49, 170
HapII CCGG 7 cut(s) 166, 251, 286, 373, 606, 1004, 1010
HgaI GACGC 1 cut(s) 655
HhaI GCGC 3 cut(s) 688, 761, 763
Hin1II CATG 3 cut(s) 89, 235, 473
Hin6I GCGC 3 cut(s) 686, 759, 761
HinP1I GCGC 3 cut(s) 686, 759, 761
HincII GTYRAC 1 cut(s) 783
HindII GTYRAC 1 cut(s) 783
HindIII AAGCTT 1 cut(s) 818
HinfI GANTC 8 cut(s) 254, 353, 382, 476, 577, 898, 964, 977
HpaII CCGG 7 cut(s) 166, 251, 286, 373, 606, 1004, 1010
HphI GGTGA 5 cut(s) 15, 166, 193, 607, 826
Hpy166II GTNNAC 3 cut(s) 475, 541, 783
Hpy188I TCNGA 4 cut(s) 217, 645, 772, 969
Hpy188III TCNNGA 5 cut(s) 97, 232, 350, 379, 445
Hpy8I GTNNAC 3 cut(s) 475, 541, 783
HpyAV CCTTC 4 cut(s) 138, 685, 833, 1084
HpyF10VI GCNNNNNNNGC 9 cut(s) 167, 301, 310, 331, 655, 664, 892, 1057, 1132
HpyF3I CTNAG 6 cut(s) 326, 390, 551, 795, 902, 968
Hsp92II CATG 3 cut(s) 89, 235, 473
HspAI GCGC 3 cut(s) 686, 759, 761
KroI GCCGGC 1 cut(s) 285
KroNI GCCGGC 1 cut(s) 287
Ksp22I TGATCA 1 cut(s) 907
Kzo9I GATC 2 cut(s) 234, 907
LmnI GCTCC 6 cut(s) 228, 252, 655, 661, 843, 892
Lsp1109I GCAGC 4 cut(s) 636, 651, 725, 1044
LweI GCATC 3 cut(s) 90, 112, 873
MaeI CTAG 2 cut(s) 179, 1216
MaeIII GTNAC 2 cut(s) 21, 445
MalI GATC 2 cut(s) 236, 909
MboI GATC 2 cut(s) 234, 907
MfeI CAATTG 1 cut(s) 1038
MhlI GDGCHC 3 cut(s) 172, 225, 1004
MluCI AATT 3 cut(s) 565, 955, 1038
MlyI GAGTC 6 cut(s) 263, 347, 470, 892, 958, 986
Mph1103I ATGCAT 1 cut(s) 105
MroNI GCCGGC 1 cut(s) 285
MseI TTAA 1 cut(s) 858
MslI CAYNNNNRTG 1 cut(s) 672
MspI CCGG 7 cut(s) 166, 251, 286, 373, 606, 1004, 1010
MspR9I CCNGG 6 cut(s) 167, 251, 373, 607, 1004, 1005
MunI CAATTG 1 cut(s) 1038
MvnI CGCG 1 cut(s) 761
MwoI GCNNNNNNNGC 9 cut(s) 167, 301, 310, 331, 655, 664, 892, 1057, 1132
NaeI GCCGGC 1 cut(s) 287
NciI CCSGG 6 cut(s) 167, 251, 373, 607, 1004, 1005
NdeII GATC 2 cut(s) 234, 907
NgoMIV GCCGGC 1 cut(s) 285
NlaIII CATG 3 cut(s) 89, 235, 473
NlaIV GGNNCC 4 cut(s) 170, 377, 604, 1008
NmeAIII GCCGAG 1 cut(s) 450
NmuCI GTSAC 2 cut(s) 21, 445
NsiI ATGCAT 1 cut(s) 105
NspI RCATGY 2 cut(s) 89, 473
PagI TCATGA 1 cut(s) 231
PauI GCGCGC 1 cut(s) 759
PdiI GCCGGC 1 cut(s) 287
PfeI GAWTC 2 cut(s) 382, 577
PfoI TCCNGGA 1 cut(s) 249
PkrI GCNGC 7 cut(s) 160, 585, 651, 666, 740, 937, 1059
PleI GAGTC 6 cut(s) 262, 347, 470, 892, 958, 985
PpsI GAGTC 6 cut(s) 262, 347, 470, 892, 958, 985
PshAI GACNNNNGTC 1 cut(s) 357
Psp124BI GAGCTC 1 cut(s) 225
PspN4I GGNNCC 4 cut(s) 170, 377, 604, 1008
PspOMI GGGCCC 1 cut(s) 168
PspPI GGNCC 3 cut(s) 168, 169, 1007
PstI CTGCAG 2 cut(s) 654, 1137
PstNI CAGNNNCTG 2 cut(s) 649, 658
PteI GCGCGC 1 cut(s) 759
RsaI GTAC 4 cut(s) 263, 299, 572, 1019
RsaNI GTAC 4 cut(s) 262, 298, 571, 1018
RseI CAYNNNNRTG 1 cut(s) 672
SacI GAGCTC 1 cut(s) 225
SaqAI TTAA 1 cut(s) 858
SatI GCNGC 7 cut(s) 159, 584, 650, 665, 739, 936, 1058
Sau3AI GATC 2 cut(s) 234, 907
Sau96I GGNCC 3 cut(s) 168, 169, 1007
ScaI AGTACT 1 cut(s) 1019
SchI GAGTC 6 cut(s) 263, 347, 470, 892, 958, 986
ScrFI CCNGG 6 cut(s) 167, 251, 373, 607, 1004, 1005
SduI GDGCHC 3 cut(s) 172, 225, 1004
SfaNI GCATC 3 cut(s) 90, 112, 873
SfcI CTRYAG 2 cut(s) 650, 1133
SinI GGWCC 1 cut(s) 1007
SmaI CCCGGG 1 cut(s) 1005
SmiMI CAYNNNNRTG 1 cut(s) 672
SmlI CTYRAG 4 cut(s) 80, 821, 887, 974
SmoI CTYRAG 4 cut(s) 80, 821, 887, 974
Sse9I AATT 3 cut(s) 565, 955, 1038
SspI AATATT 1 cut(s) 1180
SspMI CTAG 2 cut(s) 179, 1216
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 6 cut(s) 165, 249, 371, 605, 1002, 1003
TasI AATT 3 cut(s) 565, 955, 1038
TatI WGTACW 1 cut(s) 1017
TauI GCSGC 3 cut(s) 161, 586, 938
TfiI GAWTC 2 cut(s) 382, 577
Tru1I TTAA 1 cut(s) 858
Tru9I TTAA 1 cut(s) 858
TscAI CASTG 3 cut(s) 139, 878, 910
TseFI GTSAC 2 cut(s) 21, 445
TseI GCWGC 4 cut(s) 649, 664, 738, 1057
Tsp45I GTSAC 2 cut(s) 21, 445
TspDTI ATGAA 4 cut(s) 395, 1103, 1173, 1198
TspMI CCCGGG 1 cut(s) 1003
TspRI CASTG 3 cut(s) 139, 878, 910
VpaK11BI GGWCC 1 cut(s) 1007
XagI CCTNNNNNAGG 1 cut(s) 415
XapI RAATTY 2 cut(s) 565, 955
XceI RCATGY 2 cut(s) 89, 473
XmaI CCCGGG 1 cut(s) 1003
XspI CTAG 2 cut(s) 179, 1216
ZrmI AGTACT 1 cut(s) 1019
Zsp2I ATGCAT 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.