Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006631

Physical Location & Seq

Genomic Coordinates Forward (+)

22156304 .. 22158110

Gene Structure 1807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G54540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGAGGAGGAAGAGCTATGGCGACGGCGGCGAAGGTTGCTGGAATCGGAGTTGGTAAAGGAGGATTCAAGGGATTTGGATTTCCTCCGGCGACTGAGCAGTTTCGTGTTAAAACCGCGGCGGCTGCGGCGTCGTCTAAACCGGTTTCGGCTTCGATTACATCGGCGGTTCATCCTTCTGTTGAAGAAGATGGGATGATTATGCAGAGACCGGTTTGGGATGATTGGGAATTTGCTGAAGAAGAACCGATTCCTAGGGTTGTTTTTAGCAAACCTCCTAGTCTTGAAGAAGCTAAAGAAGCTACTGAAGATCTTAAAGAAGCAATTAATTTGGTGTATATGTCATCTCCAAAGTCGTCTGCTGCTATGGAAGGATCAAATGATGGTGGCTCTGTTTCCAAAATGCTCTCTGGTTTTCAATCTTCTGAGAACAGAGCTGTTGAATCAGCTGTTCCACAAGTTGCTCTTCAAGCATTTGCTTTTCTAAGTGAGAACACTGCTGCGCAGACTGTTGTTGCTTCCATTGCGAGTGACCCAAAAGTATGGGATGCTGTTATGGAGAATAAGGATCTCATGAAATTTCTTCAGACCAACAAAACCGCTGTTTCCTCTCAAGTTGAATCTGACAATGACGACCAATCTGAACGTTCGAGCACGACTGAGTGTGAAGTCGTGGAAACTAAGCCAATGGAACTCTTAGAGATTCTGCAGGACATGAAGCTAAAAGCTGTTCGGTTGATGGAAAATGTATCTTCCTACTTTGGTGACTTGTTTGGGTTAGGATCAGTTACAGAAGATGGAAAAGACAAGAAGCAGACGTTGTTCAATGACCCTCGTTCTCTGTTTGGATTAGCTGTGGTTGTTATCTTCATGGTAGTTTTAAAACGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

31.87

Weight (kDa)

4.77

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54540
fragaria_vesca	FvH4_3g21510
malus_domestica	MD03G1215500.v1.1 MD11G1230100.v1.1
prunus_persica	Prupe.4G098000_v2.0.a1 Prupe.4G197300_v2.0.a1 Prupe.5G070000_v2.0.a1
pyrus_communis	pycom03g16390 pycom10g14480 pycom11g20390
rosa_chinensis	RchiOBHm_Chr5g0036951
rosa_laevigata	RLG00000011241 RLG00000033738
rosa_multiflora	Rmu_sc0006147.1_g000006 Rmu_sc0007663.1_g000019
rosa_roxburghii	Rroxscaffold_1G00044010 Rroxscaffold_7G00166630
rosa_rugosa	Rorug05G0159300 Rorug06G0306700
rosa_samantha	Rh5AG251500 Rh5BG252900 Rh5CG285500 Rh5DG261600 Rh6BG426000 Rh6DG419300
rosa_wichuraiana	Rw5G023150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	504
AccII	CGCG	1 cut(s)	119
AciI	CCGC	7 cut(s)	29, 117, 119, 122, 128, 167, 600
AclI	AACGTT	1 cut(s)	646
AclWI	GGATC	3 cut(s)	382, 576, 790
AcsI	RAATTY	2 cut(s)	230, 578
AcuI	CTGAAG	3 cut(s)	258, 327, 569
AcyI	GRCGYC	1 cut(s)	131
AgeI	ACCGGT	2 cut(s)	142, 211
AgsI	TTSAA	8 cut(s)	70, 185, 287, 419, 443, 470, 620, 826
AluBI	AGCT	8 cut(s)	17, 293, 302, 437, 449, 721, 728, 854
AluI	AGCT	8 cut(s)	17, 293, 302, 437, 449, 721, 728, 854
Alw21I	GWGCWC	1 cut(s)	656
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	3 cut(s)	382, 576, 790
ApeKI	GCWGC	3 cut(s)	125, 362, 500
ApoI	RAATTY	2 cut(s)	230, 578
AseI	ATTAAT	1 cut(s)	327
AsiGI	ACCGGT	2 cut(s)	142, 211
Asp700I	GAANNNNTTC	1 cut(s)	249
AspA2I	CCTAGG	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	505
AsuHPI	GGTGA	1 cut(s)	776
AvrII	CCTAGG	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	656
BbvI	GCAGC	3 cut(s)	112, 349, 487
BccI	CCATC	4 cut(s)	185, 377, 733, 791
BceAI	ACGGC	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	2 cut(s)	255, 279
BfmI	CTRYAG	1 cut(s)	707
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	7 cut(s)	30, 120, 123, 126, 129, 363, 501
BlnI	CCTAGG	1 cut(s)	254
BlsI	GCNGC	7 cut(s)	31, 121, 124, 127, 130, 364, 502
BmsI	GCATC	1 cut(s)	538
BpuEI	CTTGAG	1 cut(s)	597
BsaHI	GRCGYC	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	2 cut(s)	117, 254
BsaWI	WCCGGW	2 cut(s)	142, 211
Bse118I	RCCGGY	2 cut(s)	142, 211
Bse3DI	GCAATG	1 cut(s)	522
BseDI	CCNNGG	2 cut(s)	117, 254
BseGI	GGATG	4 cut(s)	172, 201, 226, 553
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	3 cut(s)	87, 417, 651
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	3 cut(s)	112, 349, 487
Bsh1236I	CGCG	1 cut(s)	119
BshTI	ACCGGT	2 cut(s)	142, 211
BsiHKAI	GWGCWC	1 cut(s)	656
BsiSI	CCGG	3 cut(s)	89, 143, 212
BsmAI	GTCTC	1 cut(s)	202
Bso31I	GGTCTC	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	656
Bsp143I	GATC	4 cut(s)	310, 374, 568, 782
BspACI	CCGC	7 cut(s)	29, 117, 119, 122, 128, 167, 600
BspCNI	CTCAG	3 cut(s)	88, 418, 652
BspFNI	CGCG	1 cut(s)	119
BspHI	TCATGA	1 cut(s)	573
BspMAI	CTGCAG	1 cut(s)	711
BspPI	GGATC	3 cut(s)	382, 576, 790
BspQI	GCTCTTC	2 cut(s)	7, 471
BspTNI	GGTCTC	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	522
BsrFI	RCCGGY	2 cut(s)	142, 211
BssAI	RCCGGY	2 cut(s)	142, 211
BssECI	CCNNGG	2 cut(s)	117, 254
BssMI	GATC	4 cut(s)	310, 374, 568, 782
BssNI	GRCGYC	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	511
Bst6I	CTCTTC	2 cut(s)	7, 471
BstACI	GRCGYC	1 cut(s)	131
BstDEI	CTNAG	6 cut(s)	96, 426, 485, 660, 681, 697
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	4 cut(s)	172, 201, 226, 553
BstFNI	CGCG	1 cut(s)	119
BstHHI	GCGC	1 cut(s)	505
BstKTI	GATC	4 cut(s)	313, 377, 571, 785
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	4 cut(s)	310, 374, 568, 782
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 38, 125, 128, 299, 470, 524
BstSFI	CTRYAG	1 cut(s)	707
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	3 cut(s)	112, 349, 487
BstX2I	RGATCY	2 cut(s)	310, 568
BstXI	CCANNNNNNTGG	1 cut(s)	543
BstYI	RGATCY	2 cut(s)	310, 568
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	4 cut(s)	172, 201, 226, 553
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	1 cut(s)	495
CciI	TCATGA	1 cut(s)	573
CfoI	GCGC	1 cut(s)	505
Cfr10I	RCCGGY	2 cut(s)	142, 211
Cfr42I	CCGCGG	1 cut(s)	120
CseI	GACGC	1 cut(s)	120
CspAI	ACCGGT	2 cut(s)	142, 211
CviAII	CATG	3 cut(s)	574, 715, 871
DdeI	CTNAG	6 cut(s)	96, 426, 485, 660, 681, 697
DpnI	GATC	4 cut(s)	312, 376, 570, 784
DpnII	GATC	4 cut(s)	310, 374, 568, 782
DraI	TTTAAA	1 cut(s)	882
Eam1104I	CTCTTC	2 cut(s)	7, 471
EarI	CTCTTC	2 cut(s)	7, 471
Eco130I	CCWWGG	1 cut(s)	254
Eco31I	GGTCTC	1 cut(s)	202
Eco57I	CTGAAG	3 cut(s)	258, 327, 569
EcoT14I	CCWWGG	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	254
FaeI	CATG	3 cut(s)	577, 718, 874
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FatI	CATG	3 cut(s)	573, 714, 870
Fnu4HI	GCNGC	7 cut(s)	30, 120, 123, 126, 129, 363, 501
FokI	GGATG	4 cut(s)	159, 208, 233, 560
Fsp4HI	GCNGC	7 cut(s)	30, 120, 123, 126, 129, 363, 501
FspBI	CTAG	2 cut(s)	255, 279
FspI	TGCGCA	1 cut(s)	504
GlaI	GCGC	1 cut(s)	504
GluI	GCNGC	7 cut(s)	30, 120, 123, 126, 129, 363, 501
HapII	CCGG	3 cut(s)	89, 143, 212
HgaI	GACGC	1 cut(s)	120
HhaI	GCGC	1 cut(s)	505
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	3 cut(s)	577, 718, 874
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HinfI	GANTC	6 cut(s)	45, 66, 250, 443, 620, 703
HpaII	CCGG	3 cut(s)	89, 143, 212
HphI	GGTGA	1 cut(s)	776
Hpy188I	TCNGA	5 cut(s)	50, 427, 588, 625, 643
Hpy188III	TCNNGA	2 cut(s)	284, 574
Hpy99I	CGWCG	2 cut(s)	28, 136
HpyAV	CCTTC	3 cut(s)	28, 186, 365
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4IV	ACGT	3 cut(s)	646, 818, 886
HpyCH4V	TGCA	2 cut(s)	205, 709
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 38, 125, 128, 299, 470, 524
HpyF3I	CTNAG	6 cut(s)	96, 426, 485, 660, 681, 697
HpySE526I	ACGT	3 cut(s)	646, 818, 886
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	3 cut(s)	577, 718, 874
HspAI	GCGC	1 cut(s)	503
KspI	CCGCGG	1 cut(s)	120
Kzo9I	GATC	4 cut(s)	310, 374, 568, 782
LguI	GCTCTTC	2 cut(s)	7, 471
LpnPI	CCDG	6 cut(s)	27, 102, 156, 225, 396, 695
Lsp1109I	GCAGC	3 cut(s)	112, 349, 487
LweI	GCATC	1 cut(s)	538
MaeI	CTAG	2 cut(s)	255, 279
MaeII	ACGT	3 cut(s)	646, 818, 886
MaeIII	GTNAC	3 cut(s)	530, 764, 787
MalI	GATC	4 cut(s)	312, 376, 570, 784
MboI	GATC	4 cut(s)	310, 374, 568, 782
MflI	RGATCY	2 cut(s)	310, 568
MhlI	GDGCHC	1 cut(s)	656
MluCI	AATT	4 cut(s)	230, 324, 328, 578
MnlI	CCTC	5 cut(s)	56, 96, 285, 619, 843
MroXI	GAANNNNTTC	1 cut(s)	249
MseI	TTAA	5 cut(s)	111, 315, 327, 881, 892
MspA1I	CMGCKG	3 cut(s)	119, 449, 602
MspI	CCGG	3 cut(s)	89, 143, 212
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	7 cut(s)	29, 38, 125, 128, 299, 470, 524
NdeII	GATC	4 cut(s)	310, 374, 568, 782
NlaIII	CATG	3 cut(s)	577, 718, 874
NmuCI	GTSAC	2 cut(s)	530, 764
NsbI	TGCGCA	1 cut(s)	504
PagI	TCATGA	1 cut(s)	573
PciSI	GCTCTTC	2 cut(s)	7, 471
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	6 cut(s)	45, 66, 250, 443, 620, 703
PinAI	ACCGGT	2 cut(s)	142, 211
PkrI	GCNGC	7 cut(s)	31, 121, 124, 127, 130, 364, 502
PshBI	ATTAAT	1 cut(s)	327
Psp1406I	AACGTT	1 cut(s)	646
PstI	CTGCAG	1 cut(s)	711
PsuI	RGATCY	2 cut(s)	310, 568
PvuII	CAGCTG	1 cut(s)	449
SacII	CCGCGG	1 cut(s)	120
SapI	GCTCTTC	2 cut(s)	7, 471
SaqAI	TTAA	5 cut(s)	111, 315, 327, 881, 892
SatI	GCNGC	7 cut(s)	30, 120, 123, 126, 129, 363, 501
Sau3AI	GATC	4 cut(s)	310, 374, 568, 782
SduI	GDGCHC	1 cut(s)	656
SfaNI	GCATC	1 cut(s)	538
SfcI	CTRYAG	1 cut(s)	707
Sfr303I	CCGCGG	1 cut(s)	120
SgrBI	CCGCGG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
Sse9I	AATT	4 cut(s)	230, 324, 328, 578
SsiI	CCGC	7 cut(s)	29, 117, 119, 122, 128, 167, 600
SspMI	CTAG	2 cut(s)	255, 279
StyI	CCWWGG	1 cut(s)	254
TaaI	ACNGT	1 cut(s)	511
TaiI	ACGT	3 cut(s)	649, 821, 889
TaqI	TCGA	2 cut(s)	155, 650
TasI	AATT	4 cut(s)	230, 324, 328, 578
TauI	GCSGC	4 cut(s)	32, 122, 125, 131
TfiI	GAWTC	6 cut(s)	45, 66, 250, 443, 620, 703
Tru1I	TTAA	5 cut(s)	111, 315, 327, 881, 892
Tru9I	TTAA	5 cut(s)	111, 315, 327, 881, 892
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	2 cut(s)	530, 764
TseI	GCWGC	3 cut(s)	125, 362, 500
Tsp45I	GTSAC	2 cut(s)	530, 764
TspDTI	ATGAA	4 cut(s)	161, 590, 731, 859
TspRI	CASTG	1 cut(s)	502
VspI	ATTAAT	1 cut(s)	327
XapI	RAATTY	2 cut(s)	230, 578
XmaJI	CCTAGG	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	2 cut(s)	255, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.